Wall clock time and date at job start Tue Mar 31 2020 12:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 O 1.42895 * 109.46811 * 120.00675 * 2 1 3 5 5 C 1.35765 * 117.00504 * 90.00020 * 4 2 1 6 6 N 1.32128 * 119.72588 * 359.97438 * 5 4 2 7 7 C 1.32014 * 121.72237 * 180.02562 * 6 5 4 8 8 C 1.38070 * 120.98494 * 359.97438 * 7 6 5 9 9 C 1.38744 * 119.34734 * 0.02562 * 8 7 6 10 10 C 1.38993 * 118.41857 * 359.97438 * 9 8 7 11 11 N 1.39963 * 120.51072 * 179.97438 * 10 9 8 12 12 C 1.39779 * 119.99729 * 352.72239 * 11 10 9 13 13 C 1.39445 * 119.91478 * 318.89900 * 12 11 10 14 14 C 1.38357 * 120.45750 * 179.72249 * 13 12 11 15 15 C 1.38013 * 120.29352 * 0.55000 * 14 13 12 16 16 F 1.35099 * 120.09067 * 179.70341 * 15 14 13 17 17 C 1.41026 * 119.82561 * 359.72410 * 15 14 13 18 18 C 1.41289 * 120.22424 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00177 * 33.61259 * 18 17 15 20 20 C 1.39917 * 119.99678 * 213.60836 * 18 17 15 21 21 N 1.30856 * 120.00218 * 358.50538 * 20 18 17 22 22 Si 1.86802 * 119.99786 * 178.50538 * 20 18 17 23 23 H 1.48496 * 109.47308 * 60.00042 * 22 20 18 24 24 H 1.48500 * 109.47133 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47249 * 300.00140 * 22 20 18 26 26 C 1.38191 * 119.91625 * 139.17018 * 12 11 10 27 27 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46565 * 300.00047 * 1 2 3 29 29 H 1.09001 * 109.47087 * 59.99623 * 1 2 3 30 30 H 1.08998 * 109.46565 * 239.99953 * 2 1 3 31 31 H 1.08998 * 109.47192 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47337 * 300.00224 * 3 2 1 33 33 H 1.09001 * 109.46927 * 60.00105 * 3 2 1 34 34 H 1.08002 * 119.51140 * 179.72882 * 7 6 5 35 35 H 1.07991 * 120.32509 * 179.97438 * 8 7 6 36 36 H 1.07992 * 120.78996 * 180.02562 * 9 8 7 37 37 H 0.96996 * 120.00471 * 172.72317 * 11 10 9 38 38 H 1.07996 * 119.76942 * 359.97438 * 13 12 11 39 39 H 1.08005 * 119.85048 * 180.25513 * 14 13 12 40 40 H 0.97000 * 119.99789 * 180.02562 * 21 20 18 41 41 H 1.07999 * 120.14965 * 359.97272 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2117 -2.0119 1.0651 6 7 1.9697 -2.6269 -0.0791 7 6 2.1552 -3.9262 -0.2215 8 6 2.6133 -4.6980 0.8276 9 6 2.8812 -4.0959 2.0485 10 6 2.6768 -2.7265 2.1697 11 7 2.9324 -2.0743 3.3814 12 6 3.2497 -2.8177 4.5218 13 6 2.5636 -4.0008 4.7938 14 6 2.8724 -4.7485 5.9163 15 6 3.8566 -4.3245 6.7860 16 9 4.1507 -5.0547 7.8840 17 6 4.5543 -3.1269 6.5257 18 6 5.5638 -2.6853 7.4101 19 1 6.1810 -3.4048 7.9276 20 6 5.7639 -1.3158 7.6154 21 7 5.0358 -0.4436 6.9663 22 14 7.0705 -0.7326 8.8163 23 1 8.4006 -1.2280 8.3797 24 1 7.0822 0.7519 8.8525 25 1 6.7671 -1.2580 10.1717 26 6 4.2386 -2.3755 5.3797 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.9417 -4.3930 -1.1718 35 1 2.7609 -5.7601 0.6993 36 1 3.2408 -4.6773 2.8845 37 1 2.8894 -1.1065 3.4299 38 1 1.7886 -4.3380 4.1214 39 1 2.3376 -5.6655 6.1153 40 1 5.1748 0.5058 7.1084 41 1 4.7671 -1.4570 5.1709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176737921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:10 Heat of formation + Delta-G solvation = -43.983722 kcal Electronic energy + Delta-G solvation = -25743.620014 eV Core-core repulsion = 21923.218279 eV Total energy + Delta-G solvation = -3820.401735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.18200 -41.76498 -39.87475 -38.93955 -36.79521 -35.30476 -34.09244 -32.58509 -31.67163 -30.92692 -28.68021 -28.13050 -27.37970 -24.90785 -23.99586 -23.17762 -22.26977 -21.79692 -19.50478 -19.34986 -18.60774 -17.97839 -17.58212 -17.16053 -16.68684 -16.43556 -16.18323 -15.98038 -15.83449 -15.36074 -14.96151 -14.74755 -14.48779 -14.24436 -14.22375 -13.81840 -13.57058 -13.38242 -13.26193 -13.17316 -13.03476 -12.90859 -12.81327 -12.74759 -12.50012 -12.07846 -11.89352 -11.80139 -11.64112 -11.47649 -11.16114 -10.55907 -10.21319 -9.45882 -9.30723 -8.66068 -7.98777 -6.51456 0.26461 0.36301 0.83015 0.91655 1.36402 1.46787 1.49110 2.09791 2.18577 2.39476 2.64682 2.94609 3.42331 3.55745 3.90511 4.01055 4.02012 4.08194 4.17441 4.27670 4.30542 4.32595 4.57530 4.59734 4.70012 4.85144 4.88152 4.90919 4.95677 5.00065 5.06551 5.19634 5.23257 5.27617 5.32039 5.34040 5.58346 5.65183 5.77097 5.93546 6.01440 6.25524 6.41721 6.67584 6.69963 6.78988 6.88562 6.99886 8.29723 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.003858 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.854603 B = 7256.546564 C = 8758.812854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.079 3.921 3 C -0.147 4.147 4 O -0.324 6.324 5 C 0.247 3.753 6 N -0.514 5.514 7 C 0.072 3.928 8 C -0.153 4.153 9 C -0.135 4.135 10 C 0.130 3.870 11 N -0.670 5.670 12 C 0.168 3.832 13 C -0.224 4.224 14 C -0.100 4.100 15 C -0.061 4.061 16 F -0.168 7.168 17 C 0.073 3.927 18 C -0.493 4.493 19 H 0.072 0.928 20 C 0.035 3.965 21 N -0.829 5.829 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.264 1.264 25 H -0.264 1.264 26 C -0.178 4.178 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.145 0.855 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.289 0.711 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 0.037 -14.497 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 C -0.204 4.204 4 O -0.233 6.233 5 C 0.064 3.936 6 N -0.237 5.237 7 C -0.084 4.084 8 C -0.173 4.173 9 C -0.164 4.164 10 C 0.027 3.973 11 N -0.293 5.293 12 C 0.072 3.928 13 C -0.245 4.245 14 C -0.120 4.120 15 C -0.081 4.081 16 F -0.148 7.148 17 C 0.069 3.931 18 C -0.523 4.523 19 H 0.090 0.910 20 C -0.179 4.179 21 N -0.456 5.456 22 Si 0.807 3.193 23 H -0.183 1.183 24 H -0.188 1.188 25 H -0.189 1.189 26 C -0.200 4.200 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.207 0.793 35 H 0.185 0.815 36 H 0.163 0.837 37 H 0.245 0.755 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.256 0.866 -14.920 16.202 hybrid contribution 0.832 0.142 1.641 1.845 sum -5.424 1.008 -13.280 14.380 Atomic orbital electron populations 1.22158 0.94320 1.02060 1.03253 1.22468 0.94893 0.93195 0.87113 1.21922 1.01558 0.93036 1.03888 1.86212 1.81372 1.15846 1.39880 1.19287 0.99147 0.85297 0.89856 1.67178 1.20252 1.13873 1.22352 1.22744 0.98071 0.87140 1.00450 1.22135 1.00548 1.02843 0.91795 1.21638 1.02323 0.91909 1.00573 1.18168 1.00658 0.93083 0.85433 1.41906 1.74178 1.08326 1.04894 1.17648 0.94531 0.93343 0.87263 1.20405 1.04931 0.98450 1.00735 1.20647 0.96813 1.00460 0.94044 1.18265 1.04191 0.97102 0.88559 1.91246 1.93557 1.76932 1.53033 1.17753 0.92850 0.90282 0.92205 1.19633 1.16191 0.93198 1.23306 0.91009 1.26687 0.97714 0.96014 0.97508 1.69791 1.35450 1.03743 1.36574 0.85169 0.78062 0.77796 0.78232 1.18268 1.18784 1.18869 1.21117 0.99999 1.03648 0.95250 0.93523 0.92553 0.88919 0.89957 0.92603 0.88063 0.92013 0.79277 0.81458 0.83704 0.75472 0.85282 0.84504 0.90062 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.53 71.98 0.69 -2.65 16 2 C 0.08 1.89 3.11 30.59 0.10 1.98 16 3 C -0.15 -2.82 9.56 71.98 0.69 -2.13 16 4 O -0.32 -10.15 9.05 -90.92 -0.82 -10.97 16 5 C 0.25 8.00 7.48 84.96 0.64 8.64 16 6 N -0.51 -14.45 8.65 -308.43 -2.67 -17.11 16 7 C 0.07 1.63 11.17 84.63 0.95 2.58 16 8 C -0.15 -3.54 10.10 22.35 0.23 -3.31 16 9 C -0.13 -4.15 8.11 22.57 0.18 -3.97 16 10 C 0.13 4.51 6.46 38.34 0.25 4.76 16 11 N -0.67 -26.15 5.47 -179.92 -0.98 -27.14 16 12 C 0.17 7.37 5.91 38.15 0.23 7.60 16 13 C -0.22 -9.06 7.39 22.59 0.17 -8.89 16 14 C -0.10 -4.24 10.00 22.24 0.22 -4.02 16 15 C -0.06 -3.04 7.31 22.90 0.17 -2.87 16 16 F -0.17 -8.49 16.81 44.97 0.76 -7.73 16 17 C 0.07 3.93 5.55 -21.26 -0.12 3.81 16 18 C -0.49 -27.04 8.71 23.43 0.20 -26.84 16 19 H 0.07 3.91 7.82 -2.91 -0.02 3.88 16 20 C 0.03 1.75 5.40 85.24 0.46 2.21 16 21 N -0.83 -42.62 10.62 21.82 0.23 -42.39 16 22 Si 0.99 38.74 29.56 68.60 2.03 40.77 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 26 C -0.18 -9.04 8.57 22.84 0.20 -8.84 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 2.00 6.99 -2.39 -0.02 1.98 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.17 2.65 8.06 -2.92 -0.02 2.63 16 36 H 0.15 4.73 5.43 -2.91 -0.02 4.71 16 37 H 0.41 15.94 8.24 -92.71 -0.76 15.17 16 38 H 0.13 4.60 6.57 -2.91 -0.02 4.58 16 39 H 0.14 4.86 8.06 -2.91 -0.02 4.83 16 40 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 41 H 0.12 6.49 6.15 -2.91 -0.02 6.48 16 Total: -1.00 -61.28 348.35 4.08 -57.19 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 0.31 Total: 39.33 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 5.23 Total: -31.95 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.42 Total: -86.64 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.82 Total: -10.97 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.76 Total: -7.73 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -61.28 4.08 -57.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176737921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.211 kcal (2) G-P(sol) polarization free energy of solvation -61.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds