Wall clock time and date at job start Tue Mar 31 2020 10:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 125.56815 * 2 1 4 4 C 1.46695 * 106.33454 * 180.02562 * 3 2 1 5 5 C 1.47233 * 126.94270 * 179.97438 * 4 3 2 6 6 O 1.21639 * 119.99936 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00152 * 0.02745 * 5 4 3 8 8 C 1.39958 * 120.00245 * 174.89401 * 7 5 4 9 9 C 1.39384 * 119.90900 * 325.52386 * 8 7 5 10 10 C 1.38359 * 120.46597 * 179.75937 * 9 8 7 11 11 C 1.38007 * 120.29134 * 0.51306 * 10 9 8 12 12 F 1.35092 * 120.09539 * 179.71925 * 11 10 9 13 13 C 1.41016 * 119.81231 * 359.74808 * 11 10 9 14 14 C 1.41294 * 120.22707 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00235 * 25.31475 * 14 13 11 16 16 C 1.39920 * 119.99444 * 205.31734 * 14 13 11 17 17 N 1.30848 * 120.00524 * 16.69511 * 16 14 13 18 18 Si 1.86810 * 119.99530 * 196.69595 * 16 14 13 19 19 H 1.48500 * 109.47252 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46921 * 120.00386 * 18 16 14 21 21 H 1.48503 * 109.46802 * 239.99960 * 18 16 14 22 22 C 1.38143 * 119.91300 * 145.79707 * 8 7 5 23 23 C 1.36782 * 106.11201 * 0.22904 * 4 3 2 24 24 C 1.50696 * 125.80158 * 179.74617 * 23 4 3 25 25 N 1.34671 * 108.39255 * 359.63098 * 23 4 3 26 26 C 1.46507 * 124.84925 * 180.17021 * 25 23 4 27 27 H 1.08993 * 109.47525 * 89.97091 * 1 2 3 28 28 H 1.09001 * 109.47254 * 209.97263 * 1 2 3 29 29 H 1.09003 * 109.47083 * 329.96843 * 1 2 3 30 30 H 1.07998 * 126.83248 * 0.02562 * 3 2 1 31 31 H 0.96995 * 120.00294 * 354.89329 * 7 5 4 32 32 H 1.08004 * 119.76409 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.85546 * 180.23591 * 10 9 8 34 34 H 0.97004 * 119.99856 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.14968 * 359.95525 * 22 8 7 36 36 H 1.09000 * 109.46894 * 90.02627 * 24 23 4 37 37 H 1.09008 * 109.47076 * 210.02282 * 24 23 4 38 38 H 1.08998 * 109.47424 * 330.02802 * 24 23 4 39 39 H 1.08997 * 109.46841 * 270.26579 * 26 25 23 40 40 H 1.08999 * 109.47274 * 30.26945 * 26 25 23 41 41 H 1.09005 * 109.46860 * 150.26763 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2892 1.0939 0.0000 4 6 3.6743 0.6107 -0.0006 5 6 4.8975 1.4302 -0.0014 6 8 5.9891 0.8936 -0.0023 7 7 4.8076 2.7750 -0.0010 8 6 5.9656 3.5538 0.1062 9 6 7.0329 3.1087 0.8843 10 6 8.1850 3.8669 0.9943 11 6 8.2856 5.0789 0.3421 12 9 9.4102 5.8186 0.4568 13 6 7.2110 5.5433 -0.4440 14 6 7.3043 6.7832 -1.1152 15 1 8.2723 7.1825 -1.3798 16 6 6.1427 7.4937 -1.4369 17 7 5.0113 7.1983 -0.8497 18 14 6.2070 8.8640 -2.7049 19 1 7.5942 8.9995 -3.2173 20 1 5.2926 8.5411 -3.8295 21 1 5.7854 10.1412 -2.0752 22 6 6.0455 4.7640 -0.5550 23 6 3.5998 -0.7551 -0.0062 24 6 4.7722 -1.7019 -0.0143 25 7 2.3007 -1.1098 -0.0006 26 6 1.8098 -2.4902 -0.0004 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.9627 2.1234 0.0004 31 1 3.9404 3.2032 -0.0750 32 1 6.9617 2.1632 1.4016 33 1 9.0075 3.5108 1.5969 34 1 4.2060 7.6912 -1.0725 35 1 5.2168 5.1102 -1.1549 36 1 5.0581 -1.9349 1.0114 37 1 4.4941 -2.6202 -0.5315 38 1 5.6124 -1.2354 -0.5286 39 1 1.6877 -2.8325 -1.0280 40 1 2.5267 -3.1307 0.5132 41 1 0.8496 -2.5342 0.5137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192442192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:07 Heat of formation + Delta-G solvation = -22.779119 kcal Electronic energy + Delta-G solvation = -25450.158764 eV Core-core repulsion = 21630.676529 eV Total energy + Delta-G solvation = -3819.482234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.12624 -41.46775 -39.17433 -36.91235 -34.19264 -33.37045 -32.78455 -32.64765 -29.71615 -29.25812 -28.33070 -26.47239 -25.27481 -24.77563 -22.24340 -21.51703 -20.63531 -19.50527 -18.71935 -17.39986 -16.89720 -16.02699 -15.88329 -15.87023 -15.31950 -15.02401 -14.51787 -14.31125 -13.90041 -13.80640 -13.60757 -13.43429 -13.20446 -13.08398 -12.78924 -12.57535 -12.55554 -12.51118 -12.33129 -11.92321 -11.82817 -11.59285 -11.44784 -11.43706 -11.12305 -10.93611 -10.63241 -10.19459 -9.59868 -9.36393 -9.21157 -8.81848 -8.58892 -7.99279 -7.52443 -6.94271 -6.64015 -4.39542 1.84739 2.33650 2.67615 2.72199 2.82719 3.07598 3.14263 3.17889 3.92348 3.96986 3.98186 4.48797 4.59642 4.60882 4.76491 4.81183 4.97475 5.10676 5.20841 5.33691 5.39640 5.52388 5.59715 5.64608 5.66961 5.88641 6.01564 6.04506 6.18079 6.30968 6.65085 6.81549 6.87308 6.93216 6.95567 7.09230 7.17642 7.20566 7.57791 7.69879 7.74282 7.98030 8.08001 8.35396 8.54264 8.76054 8.81630 8.97536 10.13563 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003376 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.658101 B = 8292.558293 C = 9684.101061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 C -0.163 4.163 4 C -0.225 4.225 5 C 0.585 3.415 6 O -0.537 6.537 7 N -0.660 5.660 8 C 0.148 3.852 9 C -0.204 4.204 10 C -0.113 4.113 11 C -0.035 4.035 12 F -0.164 7.164 13 C 0.099 3.901 14 C -0.454 4.454 15 H 0.083 0.917 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.166 4.166 23 C 0.100 3.900 24 C -0.092 4.092 25 N -0.444 5.444 26 C 0.068 3.932 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.403 0.597 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.281 0.719 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -15.226 0.633 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.187 4.187 4 C -0.235 4.235 5 C 0.374 3.626 6 O -0.416 6.416 7 N -0.302 5.302 8 C 0.055 3.945 9 C -0.225 4.225 10 C -0.132 4.132 11 C -0.056 4.056 12 F -0.143 7.143 13 C 0.095 3.905 14 C -0.483 4.483 15 H 0.102 0.898 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.188 4.188 23 C -0.015 4.015 24 C -0.149 4.149 25 N -0.122 5.122 26 C -0.074 4.074 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.163 0.837 31 H 0.238 0.762 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.052 -15.847 0.669 19.920 hybrid contribution -0.492 0.982 -0.511 1.212 sum -12.544 -14.865 0.158 19.451 Atomic orbital electron populations 1.20302 0.87972 1.03069 1.02511 1.20151 0.93405 0.85550 1.11200 1.21843 0.90982 0.97718 1.08186 1.20175 0.92998 0.92201 1.18147 1.17335 0.87649 0.81643 0.75948 1.90725 1.28385 1.72224 1.50265 1.43239 1.09270 1.05468 1.72271 1.17578 0.86838 0.91944 0.98126 1.20140 0.94339 1.01592 1.06465 1.20365 0.97959 0.93951 1.00949 1.17899 0.86362 0.93640 1.07683 1.91260 1.50336 1.77254 1.95479 1.17344 0.89806 0.93154 0.90213 1.19502 0.94115 1.02612 1.32072 0.89847 1.25880 0.94698 0.98272 0.95213 1.69819 1.00692 1.37271 1.34130 0.86205 0.79804 0.79963 0.80483 1.18273 1.19652 1.19909 1.20895 1.00795 0.93438 1.03679 1.20255 0.84461 0.94104 1.02724 1.20551 0.94837 0.96294 1.03237 1.43411 1.05159 1.06245 1.57378 1.22036 1.01385 0.80680 1.03314 0.91155 0.92045 0.90042 0.83652 0.76243 0.87079 0.87849 0.90850 0.85260 0.90653 0.92256 0.87812 0.90860 0.89708 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.06 36.01 0.36 -0.23 16 2 C 0.00 0.05 6.85 -81.87 -0.56 -0.51 16 3 C -0.16 -2.20 10.45 -37.50 -0.39 -2.59 16 4 C -0.23 -3.64 6.29 -103.36 -0.65 -4.29 16 5 C 0.58 11.47 7.54 -12.61 -0.09 11.37 16 6 O -0.54 -11.84 12.56 5.24 0.07 -11.77 16 7 N -0.66 -13.25 5.33 -10.92 -0.06 -13.31 16 8 C 0.15 3.52 6.25 -83.76 -0.52 3.00 16 9 C -0.20 -4.93 8.65 -39.11 -0.34 -5.27 16 10 C -0.11 -2.75 10.00 -39.62 -0.40 -3.14 16 11 C -0.04 -0.94 7.31 -38.61 -0.28 -1.22 16 12 F -0.16 -4.31 16.71 2.25 0.04 -4.27 16 13 C 0.10 2.70 5.57 -106.78 -0.60 2.11 16 14 C -0.45 -12.33 8.78 -37.79 -0.33 -12.66 16 15 H 0.08 2.26 7.74 -52.49 -0.41 1.85 16 16 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 17 N -0.79 -19.87 10.94 55.55 0.61 -19.27 16 18 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.17 -4.28 8.59 -38.71 -0.33 -4.61 16 23 C 0.10 1.38 6.89 -81.88 -0.56 0.82 16 24 C -0.09 -1.09 9.26 36.00 0.33 -0.76 16 25 N -0.44 -4.87 3.09 -115.27 -0.36 -5.23 16 26 C 0.07 0.43 10.39 59.85 0.62 1.05 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.35 6.94 -51.93 -0.36 -0.01 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.15 1.74 7.70 -52.49 -0.40 1.33 16 31 H 0.40 7.06 7.96 -40.82 -0.32 6.73 16 32 H 0.11 2.62 6.47 -52.48 -0.34 2.28 16 33 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 35 H 0.13 3.33 6.18 -52.49 -0.32 3.00 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.53 7.59 -51.92 -0.39 0.13 16 38 H 0.10 1.50 6.47 -51.93 -0.34 1.17 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.44 7.51 -51.93 -0.39 0.05 16 41 H 0.08 0.38 6.90 -51.93 -0.36 0.02 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -32.01 347.94 -8.21 -40.21 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.89 Total: 9.82 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.83 Total: -15.11 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.19 Total: -37.81 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.04 Total: -4.27 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.01 -8.21 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192442192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.435 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds