Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 125.56815 * 2 1 4 4 C 1.46695 * 106.33454 * 180.02562 * 3 2 1 5 5 C 1.47233 * 126.94270 * 179.97438 * 4 3 2 6 6 O 1.21639 * 119.99936 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00152 * 0.02745 * 5 4 3 8 8 C 1.39958 * 120.00245 * 174.89401 * 7 5 4 9 9 C 1.39384 * 119.90900 * 325.52386 * 8 7 5 10 10 C 1.38359 * 120.46597 * 179.75937 * 9 8 7 11 11 C 1.38007 * 120.29134 * 0.51306 * 10 9 8 12 12 F 1.35092 * 120.09539 * 179.71925 * 11 10 9 13 13 C 1.41016 * 119.81231 * 359.74808 * 11 10 9 14 14 C 1.41294 * 120.22707 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00235 * 25.31475 * 14 13 11 16 16 C 1.39920 * 119.99444 * 205.31734 * 14 13 11 17 17 N 1.30848 * 120.00524 * 16.69511 * 16 14 13 18 18 Si 1.86810 * 119.99530 * 196.69595 * 16 14 13 19 19 H 1.48500 * 109.47252 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46921 * 120.00386 * 18 16 14 21 21 H 1.48503 * 109.46802 * 239.99960 * 18 16 14 22 22 C 1.38143 * 119.91300 * 145.79707 * 8 7 5 23 23 C 1.36782 * 106.11201 * 0.22904 * 4 3 2 24 24 C 1.50696 * 125.80158 * 179.74617 * 23 4 3 25 25 N 1.34671 * 108.39255 * 359.63098 * 23 4 3 26 26 C 1.46507 * 124.84925 * 180.17021 * 25 23 4 27 27 H 1.08993 * 109.47525 * 89.97091 * 1 2 3 28 28 H 1.09001 * 109.47254 * 209.97263 * 1 2 3 29 29 H 1.09003 * 109.47083 * 329.96843 * 1 2 3 30 30 H 1.07998 * 126.83248 * 0.02562 * 3 2 1 31 31 H 0.96995 * 120.00294 * 354.89329 * 7 5 4 32 32 H 1.08004 * 119.76409 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.85546 * 180.23591 * 10 9 8 34 34 H 0.97004 * 119.99856 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.14968 * 359.95525 * 22 8 7 36 36 H 1.09000 * 109.46894 * 90.02627 * 24 23 4 37 37 H 1.09008 * 109.47076 * 210.02282 * 24 23 4 38 38 H 1.08998 * 109.47424 * 330.02802 * 24 23 4 39 39 H 1.08997 * 109.46841 * 270.26579 * 26 25 23 40 40 H 1.08999 * 109.47274 * 30.26945 * 26 25 23 41 41 H 1.09005 * 109.46860 * 150.26763 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2892 1.0939 0.0000 4 6 3.6743 0.6107 -0.0006 5 6 4.8975 1.4302 -0.0014 6 8 5.9891 0.8936 -0.0023 7 7 4.8076 2.7750 -0.0010 8 6 5.9656 3.5538 0.1062 9 6 7.0329 3.1087 0.8843 10 6 8.1850 3.8669 0.9943 11 6 8.2856 5.0789 0.3421 12 9 9.4102 5.8186 0.4568 13 6 7.2110 5.5433 -0.4440 14 6 7.3043 6.7832 -1.1152 15 1 8.2723 7.1825 -1.3798 16 6 6.1427 7.4937 -1.4369 17 7 5.0113 7.1983 -0.8497 18 14 6.2070 8.8640 -2.7049 19 1 7.5942 8.9995 -3.2173 20 1 5.2926 8.5411 -3.8295 21 1 5.7854 10.1412 -2.0752 22 6 6.0455 4.7640 -0.5550 23 6 3.5998 -0.7551 -0.0062 24 6 4.7722 -1.7019 -0.0143 25 7 2.3007 -1.1098 -0.0006 26 6 1.8098 -2.4902 -0.0004 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.9627 2.1234 0.0004 31 1 3.9404 3.2032 -0.0750 32 1 6.9617 2.1632 1.4016 33 1 9.0075 3.5108 1.5969 34 1 4.2060 7.6912 -1.0725 35 1 5.2168 5.1102 -1.1549 36 1 5.0581 -1.9349 1.0114 37 1 4.4941 -2.6202 -0.5315 38 1 5.6124 -1.2354 -0.5286 39 1 1.6877 -2.8325 -1.0280 40 1 2.5267 -3.1307 0.5132 41 1 0.8496 -2.5342 0.5137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192442192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = -40.657950 kcal Electronic energy + Delta-G solvation = -25450.934048 eV Core-core repulsion = 21630.676529 eV Total energy + Delta-G solvation = -3820.257519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.17907 -42.44131 -40.80192 -38.74566 -36.00364 -35.08671 -33.74173 -33.56088 -31.70028 -30.22371 -29.85219 -27.54474 -27.13475 -25.76714 -23.64759 -23.39265 -22.11616 -20.94896 -19.89832 -19.25926 -18.16829 -17.88163 -17.56860 -16.88394 -16.73946 -16.58161 -16.16002 -15.94784 -15.46760 -15.36209 -14.84557 -14.44803 -14.44690 -14.18523 -14.01501 -13.91757 -13.80842 -13.50673 -13.46724 -13.34452 -13.15384 -12.97499 -12.91674 -12.77181 -12.52706 -12.45654 -12.34196 -12.03033 -11.52235 -11.17566 -10.93539 -10.59052 -9.58475 -9.52994 -8.99638 -8.82959 -8.53260 -6.43979 0.48522 0.86574 0.93912 1.39022 1.41981 1.49944 1.54471 1.84563 2.20656 2.46564 2.48463 2.73106 3.49584 3.81087 3.86047 3.92441 4.03781 4.15698 4.24079 4.36411 4.40707 4.53539 4.65267 4.68604 4.72045 4.73367 4.84338 4.89623 4.94383 5.03052 5.03827 5.09539 5.15727 5.24724 5.33213 5.64284 5.76373 5.79104 5.81290 5.96943 6.10240 6.16105 6.36975 6.50220 6.74033 6.76639 6.84094 7.37621 8.26079 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003376 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.658101 B = 8292.558293 C = 9684.101061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 C -0.189 4.189 4 C -0.267 4.267 5 C 0.582 3.418 6 O -0.569 6.569 7 N -0.658 5.658 8 C 0.156 3.844 9 C -0.212 4.212 10 C -0.106 4.106 11 C -0.070 4.070 12 F -0.169 7.169 13 C 0.075 3.925 14 C -0.490 4.490 15 H 0.072 0.928 16 C 0.041 3.959 17 N -0.811 5.811 18 Si 0.986 3.014 19 H -0.265 1.265 20 H -0.257 1.257 21 H -0.261 1.261 22 C -0.182 4.182 23 C 0.100 3.900 24 C -0.088 4.088 25 N -0.437 5.437 26 C 0.056 3.944 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.413 0.587 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.294 0.706 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 -16.740 0.204 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.213 4.213 4 C -0.277 4.277 5 C 0.374 3.626 6 O -0.450 6.450 7 N -0.301 5.301 8 C 0.063 3.937 9 C -0.233 4.233 10 C -0.125 4.125 11 C -0.091 4.091 12 F -0.148 7.148 13 C 0.071 3.929 14 C -0.519 4.519 15 H 0.090 0.910 16 C -0.175 4.175 17 N -0.436 5.436 18 Si 0.806 3.194 19 H -0.188 1.188 20 H -0.181 1.181 21 H -0.186 1.186 22 C -0.203 4.203 23 C -0.018 4.018 24 C -0.146 4.146 25 N -0.113 5.113 26 C -0.084 4.084 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.168 0.832 31 H 0.250 0.750 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.960 -17.400 0.257 22.948 hybrid contribution 0.277 1.307 -0.339 1.378 sum -14.683 -16.093 -0.083 21.785 Atomic orbital electron populations 1.20440 0.84786 1.04627 1.03774 1.20741 0.95181 0.84882 1.08358 1.22010 0.90175 0.99054 1.10030 1.20044 0.92556 0.93224 1.21891 1.17919 0.88676 0.81285 0.74698 1.90691 1.29967 1.72588 1.51778 1.43230 1.08623 1.05784 1.72501 1.17662 0.87881 0.91559 0.96644 1.20290 0.94536 1.01746 1.06752 1.20617 0.98688 0.93017 1.00200 1.18131 0.86671 0.94869 1.09393 1.91225 1.50415 1.77504 1.95649 1.17717 0.90707 0.93852 0.90639 1.19676 0.94733 1.03465 1.34022 0.90997 1.26710 0.93728 1.00498 0.96607 1.69823 1.01391 1.38054 1.34319 0.85105 0.79636 0.76869 0.77798 1.18842 1.18127 1.18563 1.20830 1.00469 0.94285 1.04762 1.20456 0.86216 0.93550 1.01584 1.20517 0.93306 0.97058 1.03675 1.43732 1.04047 1.08165 1.55374 1.22461 1.02861 0.78019 1.05038 0.89892 0.89649 0.89386 0.83159 0.74990 0.86555 0.85378 0.89482 0.85756 0.90011 0.88806 0.90861 0.89208 0.88359 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.06 71.24 0.72 -0.14 16 2 C 0.02 0.33 6.85 40.98 0.28 0.62 16 3 C -0.19 -4.97 10.45 23.62 0.25 -4.72 16 4 C -0.27 -8.65 6.29 -19.04 -0.12 -8.77 16 5 C 0.58 23.52 7.54 86.61 0.65 24.18 16 6 O -0.57 -25.99 12.56 -4.15 -0.05 -26.04 16 7 N -0.66 -27.31 5.33 -306.70 -1.63 -28.95 16 8 C 0.16 7.72 6.25 38.10 0.24 7.95 16 9 C -0.21 -10.52 8.65 22.57 0.20 -10.33 16 10 C -0.11 -5.29 10.00 22.24 0.22 -5.07 16 11 C -0.07 -3.88 7.31 22.90 0.17 -3.71 16 12 F -0.17 -9.20 16.71 44.97 0.75 -8.45 16 13 C 0.07 4.26 5.57 -21.26 -0.12 4.14 16 14 C -0.49 -27.61 8.78 23.43 0.21 -27.41 16 15 H 0.07 4.07 7.74 -2.91 -0.02 4.05 16 16 C 0.04 2.07 5.16 85.25 0.44 2.51 16 17 N -0.81 -40.90 10.94 21.82 0.24 -40.66 16 18 Si 0.99 38.26 29.59 68.60 2.03 40.29 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 22 C -0.18 -9.70 8.59 22.83 0.20 -9.50 16 23 C 0.10 2.64 6.89 41.78 0.29 2.93 16 24 C -0.09 -2.01 9.26 71.23 0.66 -1.35 16 25 N -0.44 -8.33 3.09 -518.60 -1.60 -9.93 16 26 C 0.06 0.46 10.39 127.77 1.33 1.79 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.54 6.94 -2.39 -0.02 0.53 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.15 3.57 7.70 -2.91 -0.02 3.55 16 31 H 0.41 15.00 7.96 -92.71 -0.74 14.27 16 32 H 0.12 5.62 6.47 -2.91 -0.02 5.60 16 33 H 0.13 5.61 8.06 -2.91 -0.02 5.58 16 34 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 35 H 0.12 6.64 6.18 -2.91 -0.02 6.62 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.42 7.59 -2.38 -0.02 1.40 16 38 H 0.07 2.16 6.47 -2.39 -0.02 2.15 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.10 0.60 7.51 -2.39 -0.02 0.58 16 41 H 0.11 0.41 6.90 -2.38 -0.02 0.40 16 Total: -1.00 -72.64 347.94 5.68 -66.96 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.35 Total: 33.66 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 5.60 Total: -26.88 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -3.00 Total: -79.53 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 0.75 Total: -8.45 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -72.64 5.68 -66.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192442192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.301 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds