Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46872 * 2 1 4 4 O 1.42906 * 109.46832 * 119.99657 * 2 1 3 5 5 C 1.35905 * 116.99911 * 86.32330 * 4 2 1 6 6 C 1.38812 * 120.43325 * 173.82295 * 5 4 2 7 7 N 1.31819 * 120.85026 * 179.97438 * 6 5 4 8 8 C 1.31805 * 121.85377 * 359.97438 * 7 6 5 9 9 C 1.38946 * 120.77764 * 359.97438 * 8 7 6 10 10 N 1.39726 * 120.46372 * 180.02562 * 9 8 7 11 11 C 1.39812 * 119.99872 * 328.56822 * 10 9 8 12 12 C 1.39422 * 119.91303 * 158.05175 * 11 10 9 13 13 C 1.38356 * 120.46494 * 180.02562 * 12 11 10 14 14 C 1.38022 * 120.28818 * 359.97438 * 13 12 11 15 15 F 1.35098 * 120.08641 * 179.97438 * 14 13 12 16 16 C 1.41010 * 119.82265 * 0.02562 * 14 13 12 17 17 C 1.41291 * 120.22664 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00168 * 332.52238 * 17 16 14 19 19 C 1.39922 * 119.99977 * 152.51735 * 17 16 14 20 20 N 1.30855 * 120.00187 * 347.73158 * 19 17 16 21 21 Si 1.86801 * 119.99973 * 167.72857 * 19 17 16 22 22 H 1.48500 * 109.46817 * 59.99925 * 21 19 17 23 23 H 1.48500 * 109.47199 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47141 * 300.00401 * 21 19 17 25 25 C 1.38189 * 119.91569 * 337.78065 * 11 10 9 26 26 C 1.38949 * 120.43313 * 353.79593 * 5 4 2 27 27 H 1.08997 * 109.46516 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47279 * 300.00371 * 1 2 3 29 29 H 1.08995 * 109.46953 * 60.00323 * 1 2 3 30 30 H 1.08993 * 109.47014 * 239.99895 * 2 1 3 31 31 H 1.09001 * 109.46831 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47050 * 299.99387 * 3 2 1 33 33 H 1.08993 * 109.47387 * 60.00123 * 3 2 1 34 34 H 1.08002 * 119.57607 * 359.95061 * 6 5 4 35 35 H 1.07998 * 119.61028 * 179.97438 * 8 7 6 36 36 H 0.96997 * 120.00039 * 148.57218 * 10 9 8 37 37 H 1.07997 * 119.77111 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.85980 * 179.97438 * 13 12 11 39 39 H 0.96999 * 120.00202 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.14795 * 359.97438 * 25 11 10 41 41 H 1.08001 * 120.84524 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.1388 -2.0239 1.0889 6 6 2.7145 -2.7354 2.1326 7 7 2.8465 -4.0453 2.0659 8 6 2.4419 -4.7326 1.0166 9 6 1.8547 -4.0938 -0.0686 10 7 1.4276 -4.8290 -1.1774 11 6 2.1031 -5.9969 -1.5441 12 6 1.4571 -6.9599 -2.3180 13 6 2.1145 -8.1200 -2.6869 14 6 3.4193 -8.3362 -2.2924 15 9 4.0573 -9.4707 -2.6545 16 6 4.0844 -7.3703 -1.5094 17 6 5.4203 -7.5826 -1.1012 18 1 5.7946 -8.5884 -0.9799 19 6 6.2585 -6.4898 -0.8542 20 7 5.8945 -5.2890 -1.2257 21 14 7.8970 -6.7449 0.0058 22 1 8.7386 -7.6685 -0.7966 23 1 8.5903 -5.4394 0.1475 24 1 7.6642 -7.3298 1.3508 25 6 3.4112 -6.1911 -1.1432 26 6 1.6991 -2.7105 -0.0363 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.0590 -2.2090 3.0104 35 1 2.5683 -5.8051 1.0001 36 1 0.6625 -4.5291 -1.6927 37 1 0.4362 -6.7992 -2.6318 38 1 1.6046 -8.8597 -3.2863 39 1 6.4757 -4.5314 -1.0548 40 1 3.9129 -5.4427 -0.5477 41 1 1.2472 -2.1846 -0.8643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201552782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -46.686398 kcal Electronic energy + Delta-G solvation = -25933.657545 eV Core-core repulsion = 22113.138613 eV Total energy + Delta-G solvation = -3820.518932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.13059 -41.84072 -40.15840 -39.07286 -36.76712 -35.41740 -34.21711 -32.43116 -31.75130 -30.50560 -29.09882 -28.16225 -27.24447 -25.17955 -24.11469 -23.12264 -22.35830 -21.75684 -19.56575 -19.37893 -18.15392 -17.97988 -17.64872 -17.36530 -17.01024 -16.66834 -16.37454 -15.98100 -15.86063 -15.32556 -15.17087 -14.84747 -14.57151 -14.23723 -13.94259 -13.75895 -13.73940 -13.48356 -13.44523 -13.21726 -13.10574 -12.99368 -12.81180 -12.71657 -12.36543 -12.07553 -11.93873 -11.78346 -11.71247 -11.39034 -11.12921 -10.65503 -10.11230 -9.50009 -9.34873 -8.69920 -8.08145 -6.46919 0.13836 0.27705 0.87867 0.97957 1.34132 1.45187 1.48286 2.08585 2.16478 2.34567 2.63514 2.86166 3.52069 3.71633 3.75591 3.85322 3.85962 3.97674 4.06932 4.11569 4.16498 4.31561 4.37419 4.64931 4.70196 4.75308 4.80411 4.87506 4.94811 4.97046 5.01572 5.05533 5.21117 5.22953 5.24265 5.28692 5.46876 5.67997 5.74535 6.00815 6.05369 6.24758 6.31424 6.53685 6.78740 6.85897 6.90465 7.07639 8.24178 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.004300 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.223241 B = 6510.279363 C = 7852.354738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.062 3.938 3 C -0.145 4.145 4 O -0.309 6.309 5 C 0.120 3.880 6 C 0.013 3.987 7 N -0.441 5.441 8 C 0.008 3.992 9 C 0.185 3.815 10 N -0.665 5.665 11 C 0.176 3.824 12 C -0.240 4.240 13 C -0.093 4.093 14 C -0.081 4.081 15 F -0.172 7.172 16 C 0.078 3.922 17 C -0.491 4.491 18 H 0.071 0.929 19 C 0.041 3.959 20 N -0.814 5.814 21 Si 0.975 3.025 22 H -0.259 1.259 23 H -0.264 1.264 24 H -0.261 1.261 25 C -0.206 4.206 26 C -0.218 4.218 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.175 0.825 35 H 0.137 0.863 36 H 0.419 0.581 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.287 0.713 40 H 0.128 0.872 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 13.594 1.157 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 C -0.202 4.202 4 O -0.222 6.222 5 C 0.071 3.929 6 C -0.146 4.146 7 N -0.150 5.150 8 C -0.153 4.153 9 C 0.082 3.918 10 N -0.288 5.288 11 C 0.080 3.920 12 C -0.261 4.261 13 C -0.113 4.113 14 C -0.101 4.101 15 F -0.152 7.152 16 C 0.074 3.926 17 C -0.520 4.520 18 H 0.089 0.911 19 C -0.174 4.174 20 N -0.439 5.439 21 Si 0.796 3.204 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.185 1.185 25 C -0.228 4.228 26 C -0.248 4.248 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.192 0.808 35 H 0.154 0.846 36 H 0.257 0.743 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.146 0.854 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.326 13.465 1.997 16.500 hybrid contribution 0.380 -0.206 -0.926 1.022 sum -8.946 13.258 1.071 16.030 Atomic orbital electron populations 1.22352 0.93561 1.02959 1.04321 1.22820 0.95590 0.94452 0.86486 1.21885 1.01820 0.92202 1.04313 1.86133 1.81063 1.15042 1.39941 1.19825 0.94626 0.84079 0.94385 1.22313 1.03531 0.89070 0.99733 1.67554 1.13958 1.08238 1.25211 1.22448 1.03180 1.00147 0.89508 1.18549 0.94965 0.90832 0.87473 1.41820 1.33859 1.24171 1.28994 1.17708 0.90850 0.86688 0.96777 1.20188 1.00798 0.94674 1.10471 1.20628 0.92003 0.98396 1.00235 1.18231 0.94400 0.87780 1.09728 1.91227 1.83082 1.49702 1.91177 1.17733 0.93662 0.91424 0.89754 1.19641 0.96139 0.94415 1.41802 0.91123 1.26605 1.03625 0.93845 0.93356 1.69817 1.38552 1.00678 1.34840 0.85336 0.76624 0.78979 0.79452 1.18326 1.18855 1.18494 1.21059 0.92151 1.00935 1.08703 1.21479 1.10328 0.92040 1.00945 0.92704 0.91209 0.88734 0.90992 0.92344 0.88232 0.91025 0.80769 0.84559 0.74269 0.84033 0.84659 0.90265 0.85429 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.22 71.98 0.66 -1.81 16 2 C 0.06 1.12 2.84 30.60 0.09 1.21 16 3 C -0.15 -1.98 9.56 71.98 0.69 -1.29 16 4 O -0.31 -7.68 9.81 -92.49 -0.91 -8.58 16 5 C 0.12 3.52 6.63 22.58 0.15 3.67 16 6 C 0.01 0.44 11.13 84.83 0.94 1.38 16 7 N -0.44 -17.15 10.35 -194.85 -2.02 -19.16 16 8 C 0.01 0.33 8.78 84.87 0.74 1.08 16 9 C 0.18 6.51 5.98 38.29 0.23 6.73 16 10 N -0.66 -22.37 5.49 -180.35 -0.99 -23.36 16 11 C 0.18 7.37 6.16 38.14 0.24 7.60 16 12 C -0.24 -9.18 9.93 22.58 0.22 -8.95 16 13 C -0.09 -3.93 10.00 22.25 0.22 -3.71 16 14 C -0.08 -4.11 7.31 22.90 0.17 -3.94 16 15 F -0.17 -8.90 16.74 44.97 0.75 -8.15 16 16 C 0.08 4.26 5.57 -21.27 -0.12 4.14 16 17 C -0.49 -27.49 8.77 23.43 0.21 -27.28 16 18 H 0.07 3.96 7.75 -2.91 -0.02 3.93 16 19 C 0.04 2.15 5.23 85.25 0.45 2.60 16 20 N -0.81 -42.94 10.81 21.82 0.24 -42.71 16 21 Si 0.98 40.14 29.58 68.60 2.03 42.17 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 C -0.21 -10.36 6.40 22.84 0.15 -10.21 16 26 C -0.22 -6.37 8.32 22.68 0.19 -6.18 16 27 H 0.05 0.88 7.04 -2.39 -0.02 0.87 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.35 6.30 -2.39 -0.02 1.33 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.18 4.78 8.06 -2.91 -0.02 4.75 16 35 H 0.14 6.16 6.41 -2.91 -0.02 6.14 16 36 H 0.42 10.81 8.88 -92.71 -0.82 9.99 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 38 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 40 H 0.13 6.79 4.11 -2.91 -0.01 6.78 16 41 H 0.16 3.73 5.62 -2.91 -0.02 3.72 16 Total: -1.00 -64.27 345.20 4.59 -59.69 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.26 Total: 35.07 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 5.22 Total: -34.96 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -2.77 Total: -85.24 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.91 Total: -8.58 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.75 Total: -8.15 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -64.27 4.59 -59.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201552782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.000 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds