Wall clock time and date at job start Tue Mar 31 2020 11:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29023 * 124.91521 * 2 1 4 4 C 1.31786 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.75072 * 180.02562 * 4 3 2 6 6 C 1.33633 * 114.49802 * 359.97438 * 4 3 2 7 7 C 1.50707 * 126.03721 * 180.02562 * 6 4 3 8 8 N 1.46898 * 109.47239 * 98.18488 * 7 6 4 9 9 C 1.46900 * 110.99810 * 297.14618 * 8 7 6 10 10 C 1.50704 * 109.46909 * 156.90830 * 9 8 7 11 11 H 1.07998 * 120.00140 * 1.08743 * 10 9 8 12 12 C 1.37874 * 119.99962 * 181.09628 * 10 9 8 13 13 N 1.31509 * 120.00216 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00105 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46860 * 90.00283 * 14 12 10 16 16 H 1.48495 * 109.47541 * 210.00754 * 14 12 10 17 17 H 1.48504 * 109.47243 * 330.00874 * 14 12 10 18 18 C 1.46900 * 110.99750 * 173.18864 * 8 7 6 19 19 C 1.50702 * 109.46830 * 190.00170 * 18 8 7 20 20 C 1.38236 * 120.00261 * 89.99881 * 19 18 8 21 21 C 1.38231 * 119.99885 * 179.97438 * 20 19 18 22 22 C 1.38237 * 120.00528 * 0.09745 * 21 20 19 23 23 C 1.38236 * 119.99642 * 359.86398 * 22 21 20 24 24 C 1.38234 * 120.00099 * 0.08734 * 23 22 21 25 25 S 1.70980 * 124.91583 * 180.31883 * 2 1 3 26 26 H 1.08997 * 109.46740 * 90.02252 * 1 2 3 27 27 H 1.09001 * 109.46823 * 210.02238 * 1 2 3 28 28 H 1.08994 * 109.46841 * 330.02088 * 1 2 3 29 29 H 1.08996 * 109.46778 * 276.43794 * 5 4 3 30 30 H 1.09000 * 109.46790 * 36.43997 * 5 4 3 31 31 H 1.09000 * 109.46847 * 156.43931 * 5 4 3 32 32 H 1.08996 * 109.46954 * 338.18210 * 7 6 4 33 33 H 1.09003 * 109.46724 * 218.18886 * 7 6 4 34 34 H 1.08999 * 109.46800 * 276.90322 * 9 8 7 35 35 H 1.08997 * 109.47208 * 36.90400 * 9 8 7 36 36 H 0.97004 * 120.00612 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46913 * 70.00242 * 18 8 7 38 38 H 1.09000 * 109.47227 * 309.99698 * 18 8 7 39 39 H 1.07995 * 119.99499 * 359.70802 * 20 19 18 40 40 H 1.08001 * 119.99688 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.00171 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00062 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00487 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8794 -0.0005 5 6 4.5308 2.0246 0.0000 6 6 3.9354 -0.4005 -0.0004 7 6 5.3576 -0.8994 -0.0004 8 7 5.7544 -1.2474 1.3705 9 6 5.7299 -0.0650 2.2418 10 6 5.5758 -0.5012 3.6761 11 1 5.5210 -1.5523 3.9180 12 6 5.5046 0.4417 4.6795 13 7 5.3697 0.0612 5.9311 14 14 5.5999 2.2598 4.2613 15 1 4.2324 2.7828 4.0129 16 1 6.2136 2.9971 5.3948 17 1 6.4293 2.4448 3.0434 18 6 7.0762 -1.8880 1.3892 19 6 7.3430 -2.4490 2.7623 20 6 6.9669 -3.7444 3.0648 21 6 7.2121 -4.2591 4.3240 22 6 7.8317 -3.4778 5.2815 23 6 8.2085 -2.1827 4.9788 24 6 7.9642 -1.6683 3.7192 25 16 2.4857 -1.4020 -0.0078 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 4.6790 2.3763 -1.0210 30 1 4.1388 2.8376 0.6111 31 1 5.4829 1.6881 0.4102 32 1 6.0162 -0.1194 -0.3824 33 1 5.4330 -1.7819 -0.6358 34 1 6.6617 0.4890 2.1287 35 1 4.8914 0.5737 1.9641 36 1 5.3199 0.7245 6.6372 37 1 7.8406 -1.1511 1.1430 38 1 7.0995 -2.6946 0.6564 39 1 6.4776 -4.3527 2.3186 40 1 6.9179 -5.2710 4.5605 41 1 8.0228 -3.8798 6.2655 42 1 8.6929 -1.5725 5.7266 43 1 8.2582 -0.6564 3.4827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206144155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:46 Heat of formation + Delta-G solvation = 80.664063 kcal Electronic energy + Delta-G solvation = -24623.239481 eV Core-core repulsion = 21374.456056 eV Total energy + Delta-G solvation = -3248.783425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.76886 -38.66472 -36.58905 -33.13033 -32.44707 -30.91767 -29.96527 -29.09002 -28.94331 -27.48723 -24.83677 -23.26292 -22.47185 -21.64931 -21.08400 -19.82994 -18.41973 -17.54293 -16.85216 -15.94296 -15.36982 -14.96863 -14.83670 -14.42350 -14.35440 -13.94006 -13.56243 -13.30295 -13.15458 -12.96206 -12.71416 -12.54302 -12.42712 -12.24819 -12.07358 -11.84557 -11.77397 -11.56329 -11.50877 -11.22587 -10.80450 -10.54606 -10.46457 -10.12320 -10.06252 -9.87801 -9.30314 -9.25828 -8.86630 -8.55097 -8.23728 -7.86916 -7.63976 -7.47412 -5.97340 -3.87673 1.02366 1.69373 2.11772 2.30084 2.42533 3.08006 3.28363 3.33885 3.37961 4.33091 4.44897 4.55189 5.01435 5.15376 5.22525 5.33220 5.39264 5.45353 5.47820 5.52734 5.64489 5.74344 5.76367 5.79799 5.86606 5.89014 5.91594 5.97618 6.08970 6.11283 6.22469 6.42036 6.55556 6.58791 6.77016 6.79980 6.93208 6.98506 7.35307 7.46880 7.55592 7.64540 7.82948 7.91009 7.98553 8.07822 8.70072 9.19078 9.63347 11.13917 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005528 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.833739 B = 5064.114415 C = 6036.411401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.028 3.972 3 N -0.472 5.472 4 C 0.063 3.937 5 C -0.082 4.082 6 C -0.192 4.192 7 C 0.127 3.873 8 N -0.518 5.518 9 C 0.153 3.847 10 C -0.486 4.486 11 H 0.093 0.907 12 C 0.073 3.927 13 N -0.889 5.889 14 Si 0.853 3.147 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.268 1.268 18 C 0.106 3.894 19 C -0.064 4.064 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.038 4.038 25 S 0.139 5.861 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.078 0.922 34 H -0.012 1.012 35 H 0.031 0.969 36 H 0.260 0.740 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -3.734 -12.000 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.249 4.249 3 N -0.187 5.187 4 C -0.069 4.069 5 C -0.141 4.141 6 C -0.313 4.313 7 C -0.003 4.003 8 N -0.243 5.243 9 C 0.027 3.973 10 C -0.524 4.524 11 H 0.111 0.889 12 C -0.129 4.129 13 N -0.528 5.528 14 Si 0.681 3.319 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.021 4.021 19 C -0.064 4.064 20 C -0.126 4.126 21 C -0.161 4.161 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.057 4.057 25 S 0.395 5.605 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.005 0.995 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.672 -4.561 -11.650 12.623 hybrid contribution 0.863 2.563 -0.052 2.705 sum -0.809 -1.998 -11.702 11.899 Atomic orbital electron populations 1.20358 0.85670 1.04026 1.03188 1.26794 1.01435 0.91666 1.05037 1.66052 1.04517 1.31961 1.16203 1.19994 0.90062 0.94012 1.02879 1.20459 0.96497 0.94972 1.02169 1.25457 0.99734 0.95183 1.10936 1.20413 0.88163 0.99027 0.92705 1.62163 1.26404 1.30136 1.05548 1.20439 0.95208 0.87532 0.94097 1.21181 1.47355 0.96315 0.87552 0.88925 1.24789 0.95625 0.97391 0.95092 1.69886 1.50432 1.33314 0.99147 0.87205 0.78802 0.87703 0.78196 1.20293 1.21382 1.19325 1.20883 0.89541 0.97162 0.94518 1.19285 0.98160 0.93641 0.95337 1.20663 1.00008 0.95402 0.96493 1.20773 1.01892 0.99277 0.94125 1.20848 0.99727 0.94859 0.98086 1.20767 1.01262 0.94973 0.96234 1.20636 0.95136 0.97116 0.92788 1.83713 0.97242 1.11850 1.67711 0.90157 0.90288 0.89651 0.91197 0.90901 0.90469 0.93560 0.90393 0.99482 0.95093 0.93023 0.95058 0.91552 0.87576 0.87700 0.87741 0.87558 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.46 36.01 0.38 -0.44 16 2 C 0.03 0.45 7.39 -13.45 -0.10 0.35 16 3 N -0.47 -8.62 10.53 -8.05 -0.08 -8.71 16 4 C 0.06 1.14 5.84 -84.23 -0.49 0.65 16 5 C -0.08 -1.34 9.25 36.01 0.33 -1.01 16 6 C -0.19 -3.34 5.24 -35.92 -0.19 -3.53 16 7 C 0.13 2.08 5.15 -4.97 -0.03 2.05 16 8 N -0.52 -10.16 4.51 -238.96 -1.08 -11.24 16 9 C 0.15 3.51 2.53 -4.97 -0.01 3.50 16 10 C -0.49 -13.00 6.48 -34.44 -0.22 -13.22 16 11 H 0.09 2.76 6.28 -52.49 -0.33 2.43 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 14 Si 0.85 21.28 27.45 -169.99 -4.67 16.62 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.27 -6.33 6.57 56.52 0.37 -5.96 16 18 C 0.11 1.87 5.09 -4.98 -0.03 1.84 16 19 C -0.06 -1.24 3.52 -104.62 -0.37 -1.61 16 20 C -0.11 -1.99 9.60 -39.58 -0.38 -2.37 16 21 C -0.14 -2.60 10.05 -39.58 -0.40 -3.00 16 22 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 23 C -0.11 -2.33 10.05 -39.58 -0.40 -2.73 16 24 C -0.04 -0.79 6.46 -39.58 -0.26 -1.05 16 25 S 0.14 2.16 23.18 -107.50 -2.49 -0.33 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.31 5.33 -51.93 -0.28 1.03 16 32 H 0.05 0.71 6.90 -51.93 -0.36 0.35 16 33 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 34 H -0.01 -0.29 6.89 -51.93 -0.36 -0.65 16 35 H 0.03 0.74 3.91 -51.93 -0.20 0.54 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.03 0.53 7.87 -51.93 -0.41 0.12 16 38 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.11 2.27 7.92 -52.49 -0.42 1.85 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -31.49 355.28 -10.99 -42.48 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.15 Total: 2.63 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.65 Total: -21.25 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.39 Total: -45.50 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.49 Total: -0.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.49 -10.99 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206144155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.139 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds