Wall clock time and date at job start Tue Mar 31 2020 11:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29023 * 124.91521 * 2 1 4 4 C 1.31786 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.75072 * 180.02562 * 4 3 2 6 6 C 1.33633 * 114.49802 * 359.97438 * 4 3 2 7 7 C 1.50707 * 126.03721 * 180.02562 * 6 4 3 8 8 N 1.46898 * 109.47239 * 98.18488 * 7 6 4 9 9 C 1.46900 * 110.99810 * 297.14618 * 8 7 6 10 10 C 1.50704 * 109.46909 * 156.90830 * 9 8 7 11 11 H 1.07998 * 120.00140 * 1.08743 * 10 9 8 12 12 C 1.37874 * 119.99962 * 181.09628 * 10 9 8 13 13 N 1.31509 * 120.00216 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00105 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46860 * 90.00283 * 14 12 10 16 16 H 1.48495 * 109.47541 * 210.00754 * 14 12 10 17 17 H 1.48504 * 109.47243 * 330.00874 * 14 12 10 18 18 C 1.46900 * 110.99750 * 173.18864 * 8 7 6 19 19 C 1.50702 * 109.46830 * 190.00170 * 18 8 7 20 20 C 1.38236 * 120.00261 * 89.99881 * 19 18 8 21 21 C 1.38231 * 119.99885 * 179.97438 * 20 19 18 22 22 C 1.38237 * 120.00528 * 0.09745 * 21 20 19 23 23 C 1.38236 * 119.99642 * 359.86398 * 22 21 20 24 24 C 1.38234 * 120.00099 * 0.08734 * 23 22 21 25 25 S 1.70980 * 124.91583 * 180.31883 * 2 1 3 26 26 H 1.08997 * 109.46740 * 90.02252 * 1 2 3 27 27 H 1.09001 * 109.46823 * 210.02238 * 1 2 3 28 28 H 1.08994 * 109.46841 * 330.02088 * 1 2 3 29 29 H 1.08996 * 109.46778 * 276.43794 * 5 4 3 30 30 H 1.09000 * 109.46790 * 36.43997 * 5 4 3 31 31 H 1.09000 * 109.46847 * 156.43931 * 5 4 3 32 32 H 1.08996 * 109.46954 * 338.18210 * 7 6 4 33 33 H 1.09003 * 109.46724 * 218.18886 * 7 6 4 34 34 H 1.08999 * 109.46800 * 276.90322 * 9 8 7 35 35 H 1.08997 * 109.47208 * 36.90400 * 9 8 7 36 36 H 0.97004 * 120.00612 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46913 * 70.00242 * 18 8 7 38 38 H 1.09000 * 109.47227 * 309.99698 * 18 8 7 39 39 H 1.07995 * 119.99499 * 359.70802 * 20 19 18 40 40 H 1.08001 * 119.99688 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.00171 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00062 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.00487 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8794 -0.0005 5 6 4.5308 2.0246 0.0000 6 6 3.9354 -0.4005 -0.0004 7 6 5.3576 -0.8994 -0.0004 8 7 5.7544 -1.2474 1.3705 9 6 5.7299 -0.0650 2.2418 10 6 5.5758 -0.5012 3.6761 11 1 5.5210 -1.5523 3.9180 12 6 5.5046 0.4417 4.6795 13 7 5.3697 0.0612 5.9311 14 14 5.5999 2.2598 4.2613 15 1 4.2324 2.7828 4.0129 16 1 6.2136 2.9971 5.3948 17 1 6.4293 2.4448 3.0434 18 6 7.0762 -1.8880 1.3892 19 6 7.3430 -2.4490 2.7623 20 6 6.9669 -3.7444 3.0648 21 6 7.2121 -4.2591 4.3240 22 6 7.8317 -3.4778 5.2815 23 6 8.2085 -2.1827 4.9788 24 6 7.9642 -1.6683 3.7192 25 16 2.4857 -1.4020 -0.0078 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 4.6790 2.3763 -1.0210 30 1 4.1388 2.8376 0.6111 31 1 5.4829 1.6881 0.4102 32 1 6.0162 -0.1194 -0.3824 33 1 5.4330 -1.7819 -0.6358 34 1 6.6617 0.4890 2.1287 35 1 4.8914 0.5737 1.9641 36 1 5.3199 0.7245 6.6372 37 1 7.8406 -1.1511 1.1430 38 1 7.0995 -2.6946 0.6564 39 1 6.4776 -4.3527 2.3186 40 1 6.9179 -5.2710 4.5605 41 1 8.0228 -3.8798 6.2655 42 1 8.6929 -1.5725 5.7266 43 1 8.2582 -0.6564 3.4827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206144155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:45 Heat of formation + Delta-G solvation = 61.857963 kcal Electronic energy + Delta-G solvation = -24624.054975 eV Core-core repulsion = 21374.456056 eV Total energy + Delta-G solvation = -3249.598919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05277 -40.14262 -38.06053 -34.66418 -34.21037 -32.28482 -31.50291 -30.59102 -30.20518 -29.05226 -26.22120 -24.91263 -23.68368 -23.16357 -22.66661 -21.37115 -19.70276 -18.96716 -18.68163 -17.43022 -16.79101 -16.57968 -16.34586 -15.84984 -15.72154 -15.50022 -15.12198 -14.59100 -14.51045 -14.33116 -14.19126 -13.98909 -13.89728 -13.60458 -13.51920 -13.23365 -13.12037 -12.94381 -12.86938 -12.79037 -12.37250 -12.19560 -12.08079 -11.82391 -11.58107 -11.53869 -11.27410 -10.66248 -10.55035 -10.12598 -9.49406 -9.40307 -9.19464 -8.98886 -8.11800 -6.03197 -0.21274 0.50099 0.79477 0.87916 0.89971 1.27589 1.31970 1.35600 1.80501 2.37330 3.04708 3.21271 3.23647 3.54678 3.91772 4.06317 4.11766 4.14554 4.23475 4.40186 4.45647 4.49353 4.54178 4.54834 4.56553 4.62520 4.68623 4.71144 4.79396 4.90977 4.94033 4.99388 5.05719 5.06775 5.10195 5.35380 5.43916 5.47221 5.69235 5.84886 5.93973 5.98946 6.13425 6.36225 6.48817 6.70447 6.83819 7.00775 7.50147 9.02008 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005528 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.833739 B = 5064.114415 C = 6036.411401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.027 3.973 3 N -0.506 5.506 4 C 0.046 3.954 5 C -0.080 4.080 6 C -0.216 4.216 7 C 0.129 3.871 8 N -0.531 5.531 9 C 0.167 3.833 10 C -0.466 4.466 11 H 0.060 0.940 12 C 0.023 3.977 13 N -0.932 5.932 14 Si 0.901 3.099 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.248 1.248 18 C 0.106 3.894 19 C -0.072 4.072 20 C -0.113 4.113 21 C -0.143 4.143 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.059 4.059 25 S 0.160 5.840 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.106 0.894 34 H -0.016 1.016 35 H 0.025 0.975 36 H 0.256 0.744 37 H 0.038 0.962 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -4.778 -14.258 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.251 4.251 3 N -0.222 5.222 4 C -0.087 4.087 5 C -0.139 4.139 6 C -0.337 4.337 7 C 0.000 4.000 8 N -0.255 5.255 9 C 0.040 3.960 10 C -0.505 4.505 11 H 0.078 0.922 12 C -0.174 4.174 13 N -0.574 5.574 14 Si 0.728 3.272 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.172 1.172 18 C -0.021 4.021 19 C -0.073 4.073 20 C -0.132 4.132 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.078 4.078 25 S 0.416 5.584 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.002 0.998 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.229 -5.615 -13.944 15.196 hybrid contribution 0.991 2.751 0.621 2.990 sum -1.238 -2.863 -13.323 13.684 Atomic orbital electron populations 1.20578 0.82822 1.04840 1.05147 1.27575 1.03220 0.91296 1.02973 1.66110 1.04880 1.33194 1.18054 1.20295 0.90495 0.94803 1.03081 1.20463 0.95683 0.94270 1.03533 1.25658 1.00811 0.95483 1.11766 1.20516 0.87784 1.00723 0.90992 1.61997 1.27704 1.28610 1.07197 1.20115 0.94527 0.88716 0.92602 1.21258 1.45155 0.94543 0.89553 0.92200 1.25367 0.96233 1.00787 0.95049 1.70016 1.53159 1.34162 1.00043 0.86414 0.78429 0.83728 0.78611 1.21232 1.21615 1.17166 1.20991 0.88736 0.98186 0.94193 1.19573 0.97568 0.94045 0.96065 1.21018 0.99570 0.95329 0.97244 1.21182 1.00606 1.00480 0.93790 1.21142 0.99842 0.94497 0.99396 1.20927 1.01966 0.95938 0.96334 1.20657 0.96633 0.96926 0.93587 1.83545 0.96363 1.11274 1.67218 0.87511 0.88483 0.89754 0.88568 0.92135 0.91214 0.92343 0.87559 0.99798 0.95696 0.93473 0.94415 0.88112 0.85168 0.84772 0.85931 0.88087 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.46 71.24 0.75 -0.73 16 2 C 0.03 0.79 7.39 88.52 0.65 1.45 16 3 N -0.51 -17.88 10.53 -179.40 -1.89 -19.77 16 4 C 0.05 1.59 5.84 41.52 0.24 1.84 16 5 C -0.08 -2.54 9.25 71.24 0.66 -1.88 16 6 C -0.22 -7.09 5.24 24.64 0.13 -6.96 16 7 C 0.13 3.87 5.15 85.56 0.44 4.31 16 8 N -0.53 -19.74 4.51 -909.93 -4.10 -23.84 16 9 C 0.17 7.54 2.53 85.56 0.22 7.75 16 10 C -0.47 -25.15 6.48 25.60 0.17 -24.98 16 11 H 0.06 3.61 6.28 -2.91 -0.02 3.59 16 12 C 0.02 1.30 5.47 84.65 0.46 1.76 16 13 N -0.93 -56.78 13.96 21.45 0.30 -56.48 16 14 Si 0.90 44.49 27.45 68.60 1.88 46.37 16 15 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 16 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 17 H -0.25 -11.26 6.57 99.48 0.65 -10.61 16 18 C 0.11 3.47 5.09 85.56 0.44 3.90 16 19 C -0.07 -2.73 3.52 -19.86 -0.07 -2.80 16 20 C -0.11 -3.99 9.60 22.27 0.21 -3.77 16 21 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 22 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 23 C -0.13 -5.58 10.05 22.27 0.22 -5.36 16 24 C -0.06 -2.50 6.46 22.27 0.14 -2.35 16 25 S 0.16 4.62 23.18 -56.49 -1.31 3.31 16 26 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.27 5.33 -2.39 -0.01 2.25 16 32 H 0.06 1.62 6.90 -2.39 -0.02 1.61 16 33 H 0.11 2.57 8.00 -2.39 -0.02 2.55 16 34 H -0.02 -0.71 6.89 -2.39 -0.02 -0.73 16 35 H 0.03 1.18 3.91 -2.39 -0.01 1.17 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 37 H 0.04 1.19 7.87 -2.39 -0.02 1.17 16 38 H 0.10 2.61 7.92 -2.39 -0.02 2.59 16 39 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 41 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 42 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 43 H 0.09 4.05 7.92 -2.91 -0.02 4.03 16 Total: -1.00 -68.95 355.28 0.95 -68.00 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.95 Total: 19.71 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 5.11 Total: -37.30 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.69 Total: -100.09 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.31 Total: 3.31 kcal Total: -68.95 0.95 -68.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206144155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.861 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds