Wall clock time and date at job start Tue Mar 31 2020 10:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31257 * 119.79797 * 2 1 4 4 C 1.33006 * 121.73004 * 180.31150 * 3 2 1 5 5 C 1.47996 * 119.45010 * 179.71107 * 4 3 2 6 6 C 1.39800 * 120.90950 * 174.17432 * 5 4 3 7 7 C 1.38588 * 118.97414 * 180.02562 * 6 5 4 8 8 O 1.35735 * 119.58529 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99922 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47010 * 269.99627 * 9 8 7 11 11 C 1.52999 * 109.47357 * 150.00031 * 9 8 7 12 12 N 1.32295 * 120.83287 * 0.25222 * 7 6 5 13 13 C 1.31971 * 122.01628 * 359.47839 * 12 7 6 14 14 C 1.38133 * 120.93348 * 0.52108 * 13 12 7 15 15 F 1.35098 * 120.46872 * 179.72715 * 14 13 12 16 16 C 1.39867 * 121.10193 * 359.43010 * 4 3 2 17 17 C 1.36634 * 119.46932 * 0.28248 * 16 4 3 18 18 C 1.40964 * 119.79912 * 179.75244 * 2 1 3 19 19 C 1.41051 * 120.55439 * 359.95276 * 18 2 1 20 20 H 1.07998 * 119.99895 * 329.49733 * 19 18 2 21 21 C 1.40060 * 119.99430 * 149.50106 * 19 18 2 22 22 N 1.30767 * 120.00481 * 347.96299 * 21 19 18 23 23 Si 1.86803 * 119.99570 * 167.96735 * 21 19 18 24 24 H 1.48496 * 109.47358 * 84.98934 * 23 21 19 25 25 H 1.48509 * 109.47062 * 204.98557 * 23 21 19 26 26 H 1.48499 * 109.47199 * 324.98542 * 23 21 19 27 27 H 1.08995 * 109.47226 * 270.25089 * 1 2 3 28 28 H 1.09000 * 109.47299 * 30.24926 * 1 2 3 29 29 H 1.08999 * 109.46929 * 150.24815 * 1 2 3 30 30 H 1.08006 * 120.51284 * 359.97438 * 6 5 4 31 31 H 1.08999 * 109.47857 * 29.99772 * 9 8 7 32 32 H 1.09002 * 109.47177 * 180.02562 * 10 9 8 33 33 H 1.09007 * 109.47330 * 300.00229 * 10 9 8 34 34 H 1.09002 * 109.47330 * 60.00154 * 10 9 8 35 35 H 1.08994 * 109.47590 * 179.97438 * 11 9 8 36 36 H 1.09010 * 109.47055 * 299.99883 * 11 9 8 37 37 H 1.09004 * 109.47531 * 59.99158 * 11 9 8 38 38 H 1.08002 * 119.53459 * 180.24542 * 13 12 7 39 39 H 1.08000 * 120.26995 * 180.29321 * 16 4 3 40 40 H 1.08000 * 120.80051 * 179.97438 * 17 16 4 41 41 H 0.96999 * 120.00074 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4886 1.1839 -0.0062 5 6 4.1723 2.4964 -0.0123 6 6 5.5629 2.5823 0.1029 7 6 6.1615 3.8322 0.0930 8 8 7.5107 3.9300 0.2047 9 6 8.0693 5.2452 0.1887 10 6 8.3926 5.6445 -1.2525 11 6 9.3516 5.2649 1.0231 12 7 5.4340 4.9315 -0.0183 13 6 4.1200 4.8921 -0.1343 14 6 3.4428 3.6882 -0.1334 15 9 2.0969 3.6591 -0.2472 16 6 4.2511 0.0113 -0.0010 17 6 3.6203 -1.2007 0.0047 18 6 2.2076 -1.2232 0.0053 19 6 1.5098 -2.4491 0.0116 20 1 0.5427 -2.5175 0.4873 21 6 2.0714 -3.5775 -0.5991 22 7 3.1182 -3.4497 -1.3724 23 14 1.3250 -5.2652 -0.3090 24 1 0.2065 -5.4821 -1.2614 25 1 2.3619 -6.3076 -0.5177 26 1 0.8132 -5.3475 1.0825 27 1 -0.3633 0.0045 1.0276 28 1 -0.3634 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 6.1615 1.6884 0.1990 31 1 7.3517 5.9500 0.6087 32 1 8.8191 6.6475 -1.2646 33 1 9.1103 4.9398 -1.6725 34 1 7.4791 5.6306 -1.8470 35 1 9.7780 6.2679 1.0106 36 1 9.1213 4.9803 2.0499 37 1 10.0693 4.5601 0.6032 38 1 3.5658 5.8145 -0.2267 39 1 5.3298 0.0635 -0.0013 40 1 4.1879 -2.1195 0.0083 41 1 3.5068 -4.2312 -1.7956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206617467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:37 Heat of formation + Delta-G solvation = -33.221503 kcal Electronic energy + Delta-G solvation = -25473.753054 eV Core-core repulsion = 21653.818004 eV Total energy + Delta-G solvation = -3819.935050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.00856 -40.29197 -38.76327 -37.72255 -34.53563 -33.20717 -33.00100 -31.22194 -30.41346 -29.30695 -27.33842 -27.08799 -25.77864 -23.69402 -22.85543 -21.78878 -20.77406 -20.12528 -18.12269 -17.56095 -16.94573 -16.83173 -15.65643 -15.60440 -14.97260 -14.87909 -14.68711 -14.51180 -14.12367 -13.81139 -13.57414 -13.24937 -13.07436 -12.89009 -12.54877 -12.40123 -12.29848 -11.98833 -11.85927 -11.83827 -11.72441 -11.66223 -11.46764 -11.30843 -11.01235 -10.92439 -10.78738 -10.64545 -10.00648 -9.73600 -9.36973 -9.35266 -8.42539 -8.15777 -8.00975 -7.44049 -7.09809 -4.71111 1.17904 1.43692 2.54966 2.82610 2.88366 2.92053 3.05288 3.15591 3.65357 3.98666 4.44728 4.47007 4.68605 4.82002 4.93238 5.07273 5.19418 5.25430 5.39288 5.40956 5.44086 5.63668 5.67900 5.75723 5.80937 6.00008 6.09578 6.12255 6.12944 6.22173 6.26584 6.51078 6.57370 6.67952 6.72418 6.74341 6.88061 6.95821 7.17806 7.48350 7.51883 7.63134 7.71591 8.06799 8.16428 8.36853 8.45982 9.42270 9.78064 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.003160 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.093587 B = 8859.932941 C = 9988.887446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.017 3.983 3 N -0.428 5.428 4 C -0.019 4.019 5 C 0.064 3.936 6 C -0.185 4.185 7 C 0.312 3.688 8 O -0.303 6.303 9 C 0.081 3.919 10 C -0.168 4.168 11 C -0.150 4.150 12 N -0.541 5.541 13 C 0.103 3.897 14 C 0.016 3.984 15 F -0.114 7.114 16 C -0.112 4.112 17 C -0.140 4.140 18 C 0.081 3.919 19 C -0.423 4.423 20 H 0.092 0.908 21 C 0.070 3.930 22 N -0.774 5.774 23 Si 0.918 3.082 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.257 1.257 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.162 0.838 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 8.856 1.658 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 N -0.137 5.137 4 C -0.152 4.152 5 C 0.055 3.945 6 C -0.207 4.207 7 C 0.134 3.866 8 O -0.211 6.211 9 C 0.025 3.975 10 C -0.225 4.225 11 C -0.207 4.207 12 N -0.265 5.265 13 C -0.053 4.053 14 C -0.007 4.007 15 F -0.092 7.092 16 C -0.133 4.133 17 C -0.165 4.165 18 C 0.075 3.925 19 C -0.452 4.452 20 H 0.110 0.890 21 C -0.152 4.152 22 N -0.397 5.397 23 Si 0.741 3.259 24 H -0.189 1.189 25 H -0.198 1.198 26 H -0.181 1.181 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.162 0.838 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.179 0.821 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.745 10.116 1.525 12.254 hybrid contribution -0.287 -2.208 -0.113 2.230 sum 6.457 7.908 1.412 10.307 Atomic orbital electron populations 1.20276 0.90674 1.01491 1.00572 1.21124 0.95386 0.87745 1.08807 1.66848 1.08082 1.30451 1.08273 1.18338 0.89390 0.89489 1.17957 1.18936 0.91429 0.92246 0.91854 1.20872 0.93225 0.96608 1.10007 1.19456 0.83931 0.89552 0.93659 1.86288 1.16133 1.31235 1.87433 1.22260 0.95239 0.83463 0.96543 1.22211 1.02449 1.01454 0.96413 1.21899 0.96201 1.02507 1.00115 1.67082 1.07448 1.30690 1.21266 1.22194 0.88932 0.96497 0.97627 1.18569 0.79138 0.94066 1.08959 1.91536 1.27380 1.97015 1.93302 1.21270 0.98722 0.93213 1.00110 1.21259 0.94656 0.96470 1.04080 1.18506 0.92560 0.93278 0.88115 1.19758 1.04229 0.92680 1.28497 0.89046 1.26135 0.94216 1.01984 0.92830 1.69739 1.17666 1.33263 1.19072 0.86136 0.79669 0.79567 0.80493 1.18891 1.19801 1.18072 0.93141 0.92867 0.91323 0.83750 0.89360 0.91447 0.92139 0.91905 0.90787 0.91881 0.91750 0.82132 0.87741 0.85600 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 9.59 36.01 0.35 -1.13 16 2 C 0.02 0.42 6.86 -81.81 -0.56 -0.14 16 3 N -0.43 -10.51 8.37 -5.39 -0.05 -10.55 16 4 C -0.02 -0.45 6.74 -82.75 -0.56 -1.01 16 5 C 0.06 1.31 5.91 -104.56 -0.62 0.70 16 6 C -0.19 -3.38 9.41 -38.87 -0.37 -3.74 16 7 C 0.31 5.29 7.45 -17.22 -0.13 5.16 16 8 O -0.30 -4.63 9.76 -18.91 -0.18 -4.81 16 9 C 0.08 0.98 3.11 -26.73 -0.08 0.90 16 10 C -0.17 -1.80 9.53 37.16 0.35 -1.45 16 11 C -0.15 -1.39 9.56 37.16 0.36 -1.04 16 12 N -0.54 -8.84 8.61 -13.37 -0.12 -8.96 16 13 C 0.10 1.67 11.16 -17.53 -0.20 1.47 16 14 C 0.02 0.31 7.32 -38.86 -0.28 0.02 16 15 F -0.11 -2.36 15.48 2.25 0.03 -2.32 16 16 C -0.11 -2.55 9.40 -39.55 -0.37 -2.93 16 17 C -0.14 -3.41 8.69 -39.00 -0.34 -3.75 16 18 C 0.08 2.00 5.53 -106.64 -0.59 1.41 16 19 C -0.42 -9.97 8.00 -37.83 -0.30 -10.28 16 20 H 0.09 2.02 7.07 -52.49 -0.37 1.65 16 21 C 0.07 1.56 5.24 -17.32 -0.09 1.47 16 22 N -0.77 -18.07 11.06 55.55 0.61 -17.46 16 23 Si 0.92 16.62 29.58 -169.99 -5.03 11.59 16 24 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 25 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 26 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.34 6.86 -51.93 -0.36 0.98 16 30 H 0.14 2.46 6.32 -52.48 -0.33 2.13 16 31 H 0.09 1.11 6.97 -51.93 -0.36 0.75 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 39 H 0.10 2.08 6.27 -52.49 -0.33 1.75 16 40 H 0.13 3.06 6.50 -52.49 -0.34 2.72 16 41 H 0.29 6.09 8.29 -40.82 -0.34 5.76 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -27.04 349.15 -7.92 -34.96 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.03 Total: 6.62 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -3.43 Total: -14.33 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.45 Total: -36.97 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.18 Total: -4.81 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.03 Total: -2.32 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.04 -7.92 -34.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206617467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.741 kcal (2) G-P(sol) polarization free energy of solvation -27.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds