Wall clock time and date at job start Tue Mar 31 2020 12:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46760 * 2 1 4 4 O 1.42895 * 109.47313 * 119.99976 * 2 1 3 5 5 C 1.35951 * 116.99983 * 155.04826 * 4 2 1 6 6 C 1.38678 * 120.40608 * 5.30845 * 5 4 2 7 7 N 1.31942 * 120.88821 * 180.02562 * 6 5 4 8 8 C 1.31907 * 121.81950 * 0.02562 * 7 6 5 9 9 F 1.35104 * 119.64523 * 180.02562 * 8 7 6 10 10 C 1.39273 * 120.71459 * 359.97438 * 8 7 6 11 11 N 1.39724 * 120.47330 * 180.02562 * 10 8 7 12 12 C 1.38647 * 119.99320 * 185.80363 * 11 10 8 13 13 C 1.38827 * 120.29534 * 252.42852 * 12 11 10 14 14 C 1.38105 * 120.01794 * 180.02562 * 13 12 11 15 15 C 1.38945 * 120.63711 * 0.02562 * 14 13 12 16 16 C 1.36412 * 120.60606 * 359.97438 * 15 14 13 17 17 C 1.40744 * 119.95750 * 0.25396 * 16 15 14 18 18 C 1.41003 * 120.31369 * 179.72452 * 17 16 15 19 19 H 1.07996 * 120.00259 * 208.98135 * 18 17 16 20 20 C 1.39910 * 120.00120 * 28.98163 * 18 17 16 21 21 N 1.30899 * 119.99711 * 12.23846 * 20 18 17 22 22 Si 1.86794 * 120.00146 * 192.23963 * 20 18 17 23 23 H 1.48505 * 109.47151 * 60.00271 * 22 20 18 24 24 H 1.48501 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47414 * 299.99779 * 22 20 18 26 26 C 1.39022 * 120.40407 * 185.58825 * 5 4 2 27 27 H 1.09001 * 109.47140 * 299.99736 * 1 2 3 28 28 H 1.08997 * 109.47451 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46814 * 239.99862 * 2 1 3 31 31 H 1.08994 * 109.47136 * 60.00608 * 3 2 1 32 32 H 1.09010 * 109.46724 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46903 * 300.00047 * 3 2 1 34 34 H 1.07994 * 119.55820 * 0.04104 * 6 5 4 35 35 H 0.96996 * 120.00090 * 5.80240 * 11 10 8 36 36 H 1.07993 * 119.99281 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.68240 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.69393 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.02333 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00024 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.83298 * 359.97263 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2476 -1.2240 1.0981 6 6 4.0408 -1.0292 -0.0226 7 7 5.2466 -1.5593 -0.0995 8 6 5.7476 -2.2921 0.8761 9 9 6.9878 -2.8134 0.7512 10 6 5.0125 -2.5334 2.0342 11 7 5.5484 -3.3099 3.0648 12 6 4.7659 -3.6444 4.1593 13 6 4.9929 -3.0464 5.3915 14 6 4.2103 -3.3842 6.4781 15 6 3.1922 -4.3215 6.3534 16 6 2.9467 -4.9249 5.1549 17 6 3.7320 -4.6031 4.0321 18 6 3.4885 -5.2266 2.7910 19 1 4.2974 -5.3672 2.0895 20 6 2.1990 -5.6630 2.4684 21 7 1.1792 -5.2869 3.1979 22 14 1.9325 -6.7823 0.9969 23 1 2.6999 -8.0396 1.1859 24 1 0.4872 -7.0992 0.8714 25 1 2.3986 -6.0984 -0.2361 26 6 3.7349 -1.9940 2.1481 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 3.6667 -0.4353 -0.8434 35 1 6.4678 -3.6150 3.0144 36 1 5.7822 -2.3174 5.5005 37 1 4.3914 -2.9153 7.4340 38 1 2.5892 -4.5739 7.2130 39 1 2.1532 -5.6525 5.0687 40 1 0.2852 -5.5898 2.9745 41 1 3.1381 -2.1662 3.0316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215782455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:23 Heat of formation + Delta-G solvation = -24.185923 kcal Electronic energy + Delta-G solvation = -26649.217833 eV Core-core repulsion = 22829.674595 eV Total energy + Delta-G solvation = -3819.543238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.28969 -40.27405 -38.58158 -37.60566 -34.94029 -33.77809 -33.28143 -30.54399 -29.75133 -29.39586 -27.73848 -27.13977 -25.29059 -23.44715 -22.84487 -21.21597 -21.11143 -19.99635 -18.21965 -17.49620 -17.35745 -17.26280 -15.87319 -15.65506 -15.46422 -15.13353 -14.97641 -14.41543 -14.21156 -13.82706 -13.56582 -13.28627 -13.07919 -12.81875 -12.71832 -12.60389 -12.39597 -12.28808 -12.00291 -11.77234 -11.67762 -11.33378 -11.24429 -11.04493 -10.96227 -10.74290 -10.68296 -10.55403 -9.85129 -9.62687 -9.32078 -9.21434 -8.14545 -7.65284 -7.54528 -6.97693 -6.72674 -4.52109 1.63849 1.82110 2.61746 2.79469 2.99974 3.04381 3.13731 3.29453 3.85400 4.08052 4.20972 4.31504 4.52858 4.75805 4.89368 4.96724 5.10428 5.29535 5.44756 5.48128 5.52471 5.61510 5.68688 5.76387 5.92525 6.06525 6.07999 6.14751 6.27294 6.44422 6.49833 6.69831 6.79217 6.92911 7.01449 7.16385 7.27562 7.55449 7.66213 7.76180 7.92828 8.02595 8.11338 8.20026 8.30197 8.56256 8.71412 8.86847 10.06005 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.005890 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.882999 B = 4752.877861 C = 5325.254333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.180 4.180 4 O -0.299 6.299 5 C 0.119 3.881 6 C -0.034 4.034 7 N -0.446 5.446 8 C 0.176 3.824 9 F -0.127 7.127 10 C 0.220 3.780 11 N -0.643 5.643 12 C -0.014 4.014 13 C -0.083 4.083 14 C -0.234 4.234 15 C -0.103 4.103 16 C -0.147 4.147 17 C 0.118 3.882 18 C -0.443 4.443 19 H 0.076 0.924 20 C 0.079 3.921 21 N -0.787 5.787 22 Si 0.904 3.096 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.139 4.139 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.398 0.602 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.283 0.717 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 7.432 -4.481 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.237 4.237 4 O -0.211 6.211 5 C 0.070 3.930 6 C -0.193 4.193 7 N -0.160 5.160 8 C 0.015 3.985 9 F -0.107 7.107 10 C 0.109 3.891 11 N -0.262 5.262 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.254 4.254 15 C -0.121 4.121 16 C -0.167 4.167 17 C 0.114 3.886 18 C -0.472 4.472 19 H 0.094 0.906 20 C -0.140 4.140 21 N -0.412 5.412 22 Si 0.728 3.272 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.189 1.189 26 C -0.169 4.169 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.173 0.827 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.044 7.483 -4.889 8.999 hybrid contribution -0.103 -0.824 -0.229 0.862 sum -1.147 6.658 -5.118 8.476 Atomic orbital electron populations 1.21839 0.92544 1.03395 1.02733 1.22429 0.95503 0.92530 0.87754 1.22398 1.02324 0.96074 1.02943 1.86177 1.28856 1.67899 1.38150 1.19658 0.85288 0.93338 0.94713 1.22050 0.90743 1.07618 0.98924 1.66530 1.13923 1.07607 1.27929 1.17374 0.83805 1.04817 0.92494 1.91496 1.38281 1.84720 1.96156 1.18314 0.92307 0.90608 0.87824 1.41137 1.13710 1.53064 1.18330 1.17350 1.03728 1.03544 0.86097 1.20692 0.98612 0.98032 0.92974 1.20236 1.01785 1.06069 0.97310 1.20511 0.97092 0.97535 0.97007 1.21031 1.02210 1.02336 0.91126 1.17746 0.89839 0.87834 0.93221 1.19353 0.94409 1.32238 1.01235 0.90600 1.25865 0.95742 0.94637 0.97788 1.69794 1.00222 1.34829 1.36320 0.86411 0.78040 0.81036 0.81722 1.18732 1.20112 1.18894 1.20260 0.95021 1.00608 1.01052 0.91447 0.90759 0.91455 0.90839 0.91416 0.91673 0.91169 0.82663 0.76556 0.89039 0.89127 0.89220 0.86141 0.90634 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.56 37.16 0.36 -1.22 16 2 C 0.07 0.93 2.85 -26.73 -0.08 0.85 16 3 C -0.18 -1.87 9.18 37.16 0.34 -1.53 16 4 O -0.30 -5.13 9.81 -19.59 -0.19 -5.32 16 5 C 0.12 2.22 6.62 -39.13 -0.26 1.96 16 6 C -0.03 -0.58 9.43 -17.34 -0.16 -0.75 16 7 N -0.45 -8.67 10.36 -13.30 -0.14 -8.81 16 8 C 0.18 3.53 8.43 -17.13 -0.14 3.39 16 9 F -0.13 -2.45 16.68 2.25 0.04 -2.41 16 10 C 0.22 4.54 6.05 -83.54 -0.51 4.03 16 11 N -0.64 -13.08 4.79 -7.90 -0.04 -13.12 16 12 C -0.01 -0.30 4.73 -83.29 -0.39 -0.70 16 13 C -0.08 -1.74 9.96 -39.41 -0.39 -2.14 16 14 C -0.23 -4.86 10.03 -39.37 -0.40 -5.26 16 15 C -0.10 -2.24 9.96 -39.98 -0.40 -2.64 16 16 C -0.15 -3.54 8.60 -39.29 -0.34 -3.88 16 17 C 0.12 2.87 4.95 -106.63 -0.53 2.34 16 18 C -0.44 -11.02 7.78 -37.91 -0.29 -11.32 16 19 H 0.08 1.92 7.65 -52.49 -0.40 1.52 16 20 C 0.08 1.88 5.22 -17.32 -0.09 1.79 16 21 N -0.79 -19.18 10.94 55.55 0.61 -18.57 16 22 Si 0.90 18.63 29.58 -169.99 -5.03 13.61 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.14 -2.92 8.85 -38.95 -0.34 -3.27 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.87 6.32 -51.93 -0.33 0.55 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.72 6.94 -51.92 -0.36 0.36 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.16 2.20 5.43 -52.49 -0.29 1.91 16 35 H 0.40 7.33 8.34 -40.82 -0.34 6.99 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.12 3.00 6.29 -52.49 -0.33 2.67 16 40 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 41 H 0.16 3.64 6.80 -52.49 -0.36 3.29 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -26.48 346.64 -8.07 -34.56 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.92 Total: 13.16 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.63 Total: -18.32 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.43 Total: -40.50 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.32 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -26.48 -8.07 -34.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215782455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.372 kcal (2) G-P(sol) polarization free energy of solvation -26.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds