Wall clock time and date at job start Tue Mar 31 2020 12:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46760 * 2 1 4 4 O 1.42895 * 109.47313 * 119.99976 * 2 1 3 5 5 C 1.35951 * 116.99983 * 155.04826 * 4 2 1 6 6 C 1.38678 * 120.40608 * 5.30845 * 5 4 2 7 7 N 1.31942 * 120.88821 * 180.02562 * 6 5 4 8 8 C 1.31907 * 121.81950 * 0.02562 * 7 6 5 9 9 F 1.35104 * 119.64523 * 180.02562 * 8 7 6 10 10 C 1.39273 * 120.71459 * 359.97438 * 8 7 6 11 11 N 1.39724 * 120.47330 * 180.02562 * 10 8 7 12 12 C 1.38647 * 119.99320 * 185.80363 * 11 10 8 13 13 C 1.38827 * 120.29534 * 252.42852 * 12 11 10 14 14 C 1.38105 * 120.01794 * 180.02562 * 13 12 11 15 15 C 1.38945 * 120.63711 * 0.02562 * 14 13 12 16 16 C 1.36412 * 120.60606 * 359.97438 * 15 14 13 17 17 C 1.40744 * 119.95750 * 0.25396 * 16 15 14 18 18 C 1.41003 * 120.31369 * 179.72452 * 17 16 15 19 19 H 1.07996 * 120.00259 * 208.98135 * 18 17 16 20 20 C 1.39910 * 120.00120 * 28.98163 * 18 17 16 21 21 N 1.30899 * 119.99711 * 12.23846 * 20 18 17 22 22 Si 1.86794 * 120.00146 * 192.23963 * 20 18 17 23 23 H 1.48505 * 109.47151 * 60.00271 * 22 20 18 24 24 H 1.48501 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47414 * 299.99779 * 22 20 18 26 26 C 1.39022 * 120.40407 * 185.58825 * 5 4 2 27 27 H 1.09001 * 109.47140 * 299.99736 * 1 2 3 28 28 H 1.08997 * 109.47451 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46814 * 239.99862 * 2 1 3 31 31 H 1.08994 * 109.47136 * 60.00608 * 3 2 1 32 32 H 1.09010 * 109.46724 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46903 * 300.00047 * 3 2 1 34 34 H 1.07994 * 119.55820 * 0.04104 * 6 5 4 35 35 H 0.96996 * 120.00090 * 5.80240 * 11 10 8 36 36 H 1.07993 * 119.99281 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.68240 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.69393 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.02333 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00024 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.83298 * 359.97263 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2476 -1.2240 1.0981 6 6 4.0408 -1.0292 -0.0226 7 7 5.2466 -1.5593 -0.0995 8 6 5.7476 -2.2921 0.8761 9 9 6.9878 -2.8134 0.7512 10 6 5.0125 -2.5334 2.0342 11 7 5.5484 -3.3099 3.0648 12 6 4.7659 -3.6444 4.1593 13 6 4.9929 -3.0464 5.3915 14 6 4.2103 -3.3842 6.4781 15 6 3.1922 -4.3215 6.3534 16 6 2.9467 -4.9249 5.1549 17 6 3.7320 -4.6031 4.0321 18 6 3.4885 -5.2266 2.7910 19 1 4.2974 -5.3672 2.0895 20 6 2.1990 -5.6630 2.4684 21 7 1.1792 -5.2869 3.1979 22 14 1.9325 -6.7823 0.9969 23 1 2.6999 -8.0396 1.1859 24 1 0.4872 -7.0992 0.8714 25 1 2.3986 -6.0984 -0.2361 26 6 3.7349 -1.9940 2.1481 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 3.6667 -0.4353 -0.8434 35 1 6.4678 -3.6150 3.0144 36 1 5.7822 -2.3174 5.5005 37 1 4.3914 -2.9153 7.4340 38 1 2.5892 -4.5739 7.2130 39 1 2.1532 -5.6525 5.0687 40 1 0.2852 -5.5898 2.9745 41 1 3.1381 -2.1662 3.0316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215782455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:22 Heat of formation + Delta-G solvation = -37.427010 kcal Electronic energy + Delta-G solvation = -26649.792009 eV Core-core repulsion = 22829.674595 eV Total energy + Delta-G solvation = -3820.117415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.82397 -41.71372 -40.13350 -39.10817 -36.56735 -35.55667 -34.35876 -32.08694 -31.51850 -30.93227 -29.27179 -28.09359 -27.05604 -24.94823 -24.28133 -22.88341 -22.54069 -21.53059 -19.65446 -19.21247 -18.92237 -18.72683 -17.53674 -17.15790 -16.87091 -16.79848 -16.24223 -15.95272 -15.64066 -15.54504 -14.83156 -14.69703 -14.55636 -14.39758 -14.22982 -13.96627 -13.88558 -13.42973 -13.27014 -13.09790 -13.01298 -12.91035 -12.77014 -12.68958 -12.37160 -12.21475 -11.96463 -11.78390 -11.60744 -11.31997 -11.10720 -10.72778 -9.66789 -9.35366 -9.29323 -8.70792 -8.37810 -6.36871 0.10897 0.26678 0.88687 1.04913 1.31472 1.39624 1.46142 2.02309 2.14837 2.55932 2.68262 2.73739 2.78705 3.53203 3.66082 3.73040 3.88839 3.98658 4.11274 4.23069 4.25757 4.44535 4.59205 4.73504 4.79514 4.82272 4.85048 4.88922 4.98064 5.06372 5.11069 5.20963 5.26395 5.28193 5.31540 5.42796 5.57093 5.82341 5.99736 6.15502 6.30260 6.32673 6.39034 6.61928 6.68127 6.81005 6.90432 7.11982 8.29852 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.005890 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.882999 B = 4752.877861 C = 5325.254333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 C -0.174 4.174 4 O -0.317 6.317 5 C 0.126 3.874 6 C -0.019 4.019 7 N -0.451 5.451 8 C 0.163 3.837 9 F -0.125 7.125 10 C 0.214 3.786 11 N -0.644 5.644 12 C -0.009 4.009 13 C -0.090 4.090 14 C -0.227 4.227 15 C -0.106 4.106 16 C -0.171 4.171 17 C 0.094 3.906 18 C -0.467 4.467 19 H 0.061 0.939 20 C 0.045 3.955 21 N -0.814 5.814 22 Si 0.958 3.042 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.272 1.272 26 C -0.159 4.159 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.194 0.806 35 H 0.406 0.594 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.287 0.713 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 8.961 -5.483 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.004 3.996 3 C -0.232 4.232 4 O -0.230 6.230 5 C 0.077 3.923 6 C -0.179 4.179 7 N -0.165 5.165 8 C 0.004 3.996 9 F -0.105 7.105 10 C 0.104 3.896 11 N -0.265 5.265 12 C -0.103 4.103 13 C -0.109 4.109 14 C -0.246 4.246 15 C -0.125 4.125 16 C -0.191 4.191 17 C 0.090 3.910 18 C -0.496 4.496 19 H 0.080 0.920 20 C -0.171 4.171 21 N -0.439 5.439 22 Si 0.781 3.219 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.197 1.197 26 C -0.190 4.190 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.210 0.790 35 H 0.243 0.757 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.205 9.016 -5.883 10.832 hybrid contribution -0.086 -1.139 0.126 1.149 sum -1.292 7.877 -5.757 9.842 Atomic orbital electron populations 1.21892 0.91156 1.02894 1.04326 1.22916 0.96675 0.93566 0.86427 1.22375 1.01843 0.94540 1.04405 1.86186 1.27962 1.67981 1.40858 1.19674 0.86047 0.92412 0.94209 1.22593 0.89670 1.06527 0.99153 1.66626 1.14654 1.07625 1.27587 1.17383 0.84081 1.05570 0.92580 1.91490 1.38044 1.84775 1.96143 1.18321 0.92349 0.90862 0.88103 1.41061 1.13870 1.53425 1.18137 1.17493 1.02987 1.02704 0.87133 1.20998 0.99235 0.98180 0.92511 1.20626 1.00544 1.04940 0.98531 1.20788 0.97508 0.97251 0.96914 1.21008 1.02611 1.03232 0.92253 1.18001 0.90968 0.88691 0.93347 1.19332 0.94607 1.34180 1.01515 0.92039 1.26450 0.95290 0.95464 0.99921 1.69840 1.00537 1.35824 1.37719 0.85595 0.78536 0.79325 0.78484 1.18457 1.18676 1.19707 1.20114 0.95275 1.02500 1.01149 0.91729 0.87277 0.93007 0.89836 0.91763 0.92326 0.87946 0.78951 0.75662 0.86714 0.85979 0.86947 0.87847 0.90219 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.56 71.98 0.69 -2.12 16 2 C 0.06 1.36 2.85 30.60 0.09 1.44 16 3 C -0.17 -3.10 9.18 71.98 0.66 -2.44 16 4 O -0.32 -10.73 9.81 -93.00 -0.91 -11.65 16 5 C 0.13 4.67 6.62 22.56 0.15 4.82 16 6 C -0.02 -0.63 9.43 84.78 0.80 0.17 16 7 N -0.45 -16.98 10.36 -195.98 -2.03 -19.01 16 8 C 0.16 6.53 8.43 84.93 0.72 7.25 16 9 F -0.12 -4.78 16.68 44.97 0.75 -4.03 16 10 C 0.21 8.96 6.05 38.35 0.23 9.19 16 11 N -0.64 -26.68 4.79 -178.91 -0.86 -27.54 16 12 C -0.01 -0.42 4.73 39.03 0.18 -0.23 16 13 C -0.09 -3.68 9.96 22.38 0.22 -3.45 16 14 C -0.23 -9.06 10.03 22.41 0.22 -8.84 16 15 C -0.11 -4.58 9.96 22.01 0.22 -4.36 16 16 C -0.17 -8.46 8.60 22.46 0.19 -8.26 16 17 C 0.09 4.73 4.95 -21.17 -0.10 4.62 16 18 C -0.47 -24.15 7.78 23.35 0.18 -23.96 16 19 H 0.06 3.25 7.65 -2.91 -0.02 3.23 16 20 C 0.04 2.21 5.22 85.24 0.45 2.65 16 21 N -0.81 -41.01 10.94 21.82 0.24 -40.77 16 22 Si 0.96 38.96 29.58 68.60 2.03 40.99 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.16 -6.89 8.85 22.68 0.20 -6.68 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.74 6.32 -2.38 -0.02 1.72 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.13 6.94 -2.38 -0.02 1.11 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.19 4.81 5.43 -2.91 -0.02 4.79 16 35 H 0.41 15.15 8.34 -92.71 -0.77 14.37 16 36 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 39 H 0.10 5.39 6.29 -2.91 -0.02 5.37 16 40 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 41 H 0.12 6.12 6.80 -2.91 -0.02 6.10 16 Total: -1.00 -58.67 346.64 4.62 -54.04 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.30 Total: 38.16 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 5.10 Total: -30.20 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -2.65 Total: -87.32 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.91 Total: -11.65 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.75 Total: -4.03 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -58.67 4.62 -54.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215782455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.617 kcal (2) G-P(sol) polarization free energy of solvation -58.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds