Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47619 * 2 1 4 4 O 1.42903 * 109.46952 * 119.99828 * 2 1 3 5 5 C 1.35958 * 116.99764 * 155.62374 * 4 2 1 6 6 C 1.38664 * 120.40440 * 180.12354 * 5 4 2 7 7 N 1.31941 * 120.86856 * 179.97438 * 6 5 4 8 8 C 1.31906 * 121.82299 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.64344 * 179.97438 * 8 7 6 10 10 C 1.39217 * 120.71820 * 0.02562 * 8 7 6 11 11 N 1.39875 * 120.46777 * 179.97438 * 10 8 7 12 12 C 1.39704 * 120.00200 * 172.85866 * 11 10 8 13 13 C 1.39360 * 119.94697 * 322.45475 * 12 11 10 14 14 C 1.38477 * 120.41764 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32700 * 0.02562 * 14 13 12 16 16 C 1.40752 * 119.90131 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.21246 * 180.25659 * 16 15 14 18 18 H 1.08006 * 119.99622 * 328.28809 * 17 16 15 19 19 C 1.39922 * 120.00442 * 148.28558 * 17 16 15 20 20 N 1.30834 * 120.00045 * 355.04097 * 19 17 16 21 21 Si 1.86804 * 120.00039 * 175.04487 * 19 17 16 22 22 H 1.48497 * 109.47172 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47144 * 120.00132 * 21 19 17 24 24 H 1.48502 * 109.46867 * 239.99885 * 21 19 17 25 25 C 1.38302 * 119.95806 * 142.47408 * 12 11 10 26 26 C 1.39039 * 120.40899 * 0.40336 * 5 4 2 27 27 H 1.09002 * 109.46919 * 300.00635 * 1 2 3 28 28 H 1.09003 * 109.47178 * 60.00114 * 1 2 3 29 29 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46919 * 239.99365 * 2 1 3 31 31 H 1.09003 * 109.46753 * 300.00147 * 3 2 1 32 32 H 1.09000 * 109.47003 * 59.99564 * 3 2 1 33 33 H 1.08996 * 109.47139 * 180.02562 * 3 2 1 34 34 H 1.07996 * 119.56329 * 0.02562 * 6 5 4 35 35 H 0.97004 * 120.00331 * 352.85227 * 11 10 8 36 36 H 1.07994 * 119.79344 * 0.02562 * 13 12 11 37 37 H 1.08001 * 119.83116 * 179.97438 * 14 13 12 38 38 H 1.08009 * 120.05089 * 179.97438 * 15 14 13 39 39 H 0.97003 * 120.00075 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.15621 * 0.02562 * 25 12 11 41 41 H 1.08000 * 120.83418 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2523 -1.2137 1.1023 6 6 3.7834 -1.8853 2.1930 7 7 4.9914 -2.4134 2.1402 8 6 5.7416 -2.3269 1.0587 9 9 6.9726 -2.8835 1.0532 10 6 5.2791 -1.6675 -0.0768 11 7 6.0793 -1.5785 -1.2206 12 6 5.5537 -1.0481 -2.4013 13 6 4.2334 -1.3167 -2.7573 14 6 3.7023 -0.7956 -3.9252 15 6 4.4738 -0.0062 -4.7482 16 6 5.8093 0.2729 -4.4023 17 6 6.6060 1.0873 -5.2400 18 1 6.4449 1.0840 -6.3079 19 6 7.6030 1.8974 -4.6854 20 7 7.7345 1.9759 -3.3860 21 14 8.7461 2.8671 -5.8001 22 1 8.3922 2.6071 -7.2186 23 1 8.6058 4.3171 -5.5121 24 1 10.1494 2.4473 -5.5556 25 6 6.3444 -0.2577 -3.2154 26 6 4.0119 -1.0943 -0.0561 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4423 -0.0005 34 1 3.2003 -1.9781 3.0972 35 1 6.9993 -1.8850 -1.1940 36 1 3.6203 -1.9345 -2.1180 37 1 2.6780 -1.0101 -4.1921 38 1 4.0551 0.3976 -5.6582 39 1 8.4254 2.5378 -3.0015 40 1 7.3680 -0.0495 -2.9408 41 1 3.6264 -0.5726 -0.9196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215783954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = -23.453076 kcal Electronic energy + Delta-G solvation = -26229.566541 eV Core-core repulsion = 22410.055082 eV Total energy + Delta-G solvation = -3819.511459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.57329 -40.64349 -38.67411 -37.91562 -35.52442 -33.54957 -33.24335 -31.07231 -29.87865 -29.53022 -27.63110 -27.28323 -25.57361 -23.89446 -22.93577 -21.55181 -20.84454 -20.46355 -18.35738 -17.78824 -17.57618 -17.20195 -16.07842 -15.88273 -15.62235 -15.20606 -14.89634 -14.78349 -14.67041 -13.94856 -13.70487 -13.54803 -13.08388 -12.97576 -12.81767 -12.68010 -12.66087 -12.31825 -12.26221 -11.89954 -11.81742 -11.51831 -11.22763 -10.99402 -10.97137 -10.71964 -10.67350 -10.56318 -10.05269 -9.87329 -9.59460 -9.40630 -8.66454 -8.02107 -7.54594 -6.86565 -6.71009 -4.58919 1.27797 1.36910 2.59450 2.78306 3.00522 3.04263 3.05499 3.10513 3.58209 3.83784 3.85321 3.97446 4.48742 4.73243 4.76014 4.88406 4.95680 5.11030 5.16269 5.42568 5.47620 5.53527 5.66483 5.74853 5.77669 5.94676 5.96828 6.05253 6.17474 6.19992 6.31746 6.44536 6.59762 6.80367 6.87387 7.01101 7.10719 7.27524 7.44819 7.57490 7.68870 7.88019 7.91435 8.06187 8.13850 8.47285 8.72330 8.74719 10.10015 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.004351 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.394301 B = 6433.363506 C = 7633.464013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.179 4.179 4 O -0.302 6.302 5 C 0.120 3.880 6 C 0.033 3.967 7 N -0.440 5.440 8 C 0.185 3.815 9 F -0.122 7.122 10 C 0.200 3.800 11 N -0.659 5.659 12 C 0.153 3.847 13 C -0.267 4.267 14 C -0.080 4.080 15 C -0.225 4.225 16 C 0.125 3.875 17 C -0.460 4.460 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.803 5.803 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.173 4.173 26 C -0.227 4.227 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.166 0.834 35 H 0.410 0.590 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.280 0.720 40 H 0.129 0.871 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 -2.118 5.664 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.236 4.236 4 O -0.215 6.215 5 C 0.071 3.929 6 C -0.127 4.127 7 N -0.153 5.153 8 C 0.025 3.975 9 F -0.101 7.101 10 C 0.090 3.910 11 N -0.277 5.277 12 C 0.060 3.940 13 C -0.288 4.288 14 C -0.099 4.099 15 C -0.245 4.245 16 C 0.122 3.878 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.429 5.429 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.195 4.195 26 C -0.257 4.257 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.246 0.754 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.194 -2.372 6.566 10.765 hybrid contribution 1.020 0.806 -1.280 1.824 sum -7.174 -1.566 5.286 9.048 Atomic orbital electron populations 1.21837 0.92353 1.03036 1.03054 1.22545 0.95309 0.93015 0.87483 1.22345 1.02732 0.95555 1.03006 1.86104 1.27800 1.68073 1.39490 1.19874 0.85448 0.93522 0.94067 1.21402 0.91270 1.01909 0.98137 1.66821 1.05512 1.17759 1.25208 1.17392 0.84321 1.04148 0.91626 1.91534 1.38231 1.83809 1.96554 1.18361 0.92093 0.93733 0.86835 1.42206 1.13794 1.64589 1.07114 1.17630 0.94031 0.96521 0.85799 1.20310 0.95901 1.11443 1.01158 1.20373 0.97712 0.97609 0.94172 1.21121 0.94665 1.06963 1.01732 1.17438 0.90446 0.88774 0.91116 1.19616 1.13715 1.20540 0.95183 0.90199 1.25904 0.96697 0.96484 0.95376 1.69763 1.29160 1.32556 1.11406 0.86171 0.79757 0.79287 0.80998 1.18432 1.19892 1.19784 1.21260 1.00739 0.99157 0.98358 1.21841 0.94863 1.08072 1.00917 0.91567 0.90349 0.91712 0.90176 0.90664 0.91660 0.91552 0.81695 0.75409 0.88575 0.88796 0.88568 0.90904 0.85370 0.80956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.56 37.16 0.36 -1.00 16 2 C 0.07 0.88 2.86 -26.74 -0.08 0.81 16 3 C -0.18 -2.20 9.24 37.16 0.34 -1.86 16 4 O -0.30 -4.16 9.81 -19.61 -0.19 -4.35 16 5 C 0.12 1.84 6.60 -39.13 -0.26 1.58 16 6 C 0.03 0.50 11.13 -17.35 -0.19 0.31 16 7 N -0.44 -7.51 10.36 -13.31 -0.14 -7.65 16 8 C 0.18 3.30 8.43 -17.16 -0.14 3.16 16 9 F -0.12 -2.15 16.69 2.25 0.04 -2.11 16 10 C 0.20 3.62 6.46 -83.51 -0.54 3.08 16 11 N -0.66 -12.57 5.48 -8.31 -0.05 -12.62 16 12 C 0.15 3.28 6.02 -83.83 -0.51 2.77 16 13 C -0.27 -5.36 7.36 -39.08 -0.29 -5.65 16 14 C -0.08 -1.59 10.01 -39.70 -0.40 -1.99 16 15 C -0.22 -5.01 9.79 -38.83 -0.38 -5.39 16 16 C 0.13 3.09 5.54 -106.85 -0.59 2.49 16 17 C -0.46 -11.44 9.06 -37.75 -0.34 -11.78 16 18 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 19 C 0.07 1.71 5.33 -17.35 -0.09 1.62 16 20 N -0.80 -19.83 10.74 55.55 0.60 -19.23 16 21 Si 0.91 17.96 29.56 -169.99 -5.03 12.93 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.17 -4.15 8.56 -38.67 -0.33 -4.48 16 26 C -0.23 -3.86 6.23 -38.97 -0.24 -4.10 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.06 6.13 -51.93 -0.32 0.74 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.97 7.23 -51.93 -0.38 0.59 16 34 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.41 7.30 8.35 -40.82 -0.34 6.96 16 36 H 0.10 1.80 6.20 -52.49 -0.33 1.47 16 37 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 39 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 40 H 0.13 3.23 6.22 -52.49 -0.33 2.90 16 41 H 0.17 3.03 2.89 -52.49 -0.15 2.88 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -26.13 344.22 -8.03 -34.16 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -4.77 Total: 14.12 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.68 Total: -20.43 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.41 Total: -39.50 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.19 Total: -4.35 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.13 -8.03 -34.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215783954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.711 kcal (2) G-P(sol) polarization free energy of solvation -26.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds