Wall clock time and date at job start Tue Mar 31 2020 12:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47310 * 2 1 4 4 O 1.42897 * 109.47350 * 179.97438 * 3 2 1 5 5 C 1.35772 * 117.00094 * 180.02562 * 4 3 2 6 6 C 1.38897 * 119.60082 * 179.73311 * 5 4 3 7 7 C 1.38332 * 119.18670 * 179.72961 * 6 5 4 8 8 C 1.39405 * 118.42342 * 0.53438 * 7 6 5 9 9 N 1.39982 * 120.43097 * 179.75014 * 8 7 6 10 10 C 1.39784 * 120.00173 * 334.99682 * 9 8 7 11 11 C 1.39434 * 119.91357 * 328.08804 * 10 9 8 12 12 C 1.38360 * 120.46161 * 179.72190 * 11 10 9 13 13 C 1.38013 * 120.28795 * 0.54706 * 12 11 10 14 14 F 1.35099 * 120.08628 * 179.70469 * 13 12 11 15 15 C 1.41023 * 119.82714 * 359.72654 * 13 12 11 16 16 C 1.41288 * 120.22529 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00423 * 27.63293 * 16 15 13 18 18 C 1.39918 * 119.99848 * 207.63396 * 16 15 13 19 19 N 1.30855 * 120.00105 * 12.16318 * 18 16 15 20 20 Si 1.86807 * 119.99847 * 192.16714 * 18 16 15 21 21 H 1.48498 * 109.47115 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46759 * 119.99990 * 20 18 16 23 23 H 1.48497 * 109.46974 * 239.99577 * 20 18 16 24 24 C 1.38188 * 119.91943 * 148.35397 * 10 9 8 25 25 C 1.38702 * 119.14041 * 359.72382 * 8 7 6 26 26 N 1.31953 * 120.72521 * 0.02562 * 25 8 7 27 27 H 1.09000 * 109.47548 * 300.00107 * 1 2 3 28 28 H 1.09003 * 109.47603 * 59.99977 * 1 2 3 29 29 H 1.09004 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46807 * 239.99837 * 2 1 3 31 31 H 1.08997 * 109.46962 * 120.00262 * 2 1 3 32 32 H 1.08997 * 109.47322 * 300.00041 * 3 2 1 33 33 H 1.09011 * 109.46863 * 60.00019 * 3 2 1 34 34 H 1.08004 * 120.41029 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.78429 * 180.28641 * 7 6 5 36 36 H 0.97002 * 119.99615 * 154.99679 * 9 8 7 37 37 H 1.07997 * 119.77371 * 359.97362 * 11 10 9 38 38 H 1.07998 * 119.85526 * 180.27651 * 12 11 10 39 39 H 0.97003 * 120.00163 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.14455 * 359.97438 * 24 10 9 41 41 H 1.07998 * 119.63636 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0854 2.6522 0.0012 6 6 5.4729 2.7152 0.0075 7 6 6.0920 3.9523 0.0023 8 6 5.2926 5.0944 0.0025 9 7 5.8749 6.3673 0.0027 10 6 7.1633 6.5465 0.5144 11 6 7.6119 5.7465 1.5646 12 6 8.8870 5.9103 2.0760 13 6 9.7258 6.8764 1.5585 14 9 10.9680 7.0368 2.0649 15 6 9.2826 7.6961 0.4999 16 6 10.1344 8.6874 -0.0366 17 1 11.2060 8.5606 0.0081 18 6 9.5897 9.8336 -0.6259 19 7 8.3191 10.1067 -0.4737 20 14 10.6764 10.9738 -1.6303 21 1 12.0640 10.4454 -1.6495 22 1 10.1579 11.0553 -3.0194 23 1 10.6711 12.3275 -1.0198 24 6 7.9873 7.5197 -0.0182 25 6 3.9128 4.9530 0.0019 26 7 3.3577 3.7559 0.0017 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 6.0613 1.8095 0.0122 35 1 7.1692 4.0313 0.0023 36 1 5.3843 7.1251 -0.3523 37 1 6.9609 4.9910 1.9792 38 1 9.2260 5.2822 2.8866 39 1 7.9415 10.9015 -0.8819 40 1 7.6381 8.1417 -0.8291 41 1 3.2859 5.8324 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216588387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:16 Heat of formation + Delta-G solvation = -51.244130 kcal Electronic energy + Delta-G solvation = -24811.515434 eV Core-core repulsion = 20990.798865 eV Total energy + Delta-G solvation = -3820.716570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.13772 -41.68685 -40.02043 -38.81977 -36.57944 -35.27996 -34.66454 -33.17880 -31.66670 -31.06338 -28.64278 -27.38925 -27.15389 -24.78241 -23.75075 -23.23282 -22.34031 -21.93656 -19.43638 -19.36160 -18.53500 -17.95719 -17.78948 -17.33986 -17.21572 -16.55803 -16.17709 -15.93449 -15.52531 -15.39640 -15.22818 -14.81367 -14.50523 -14.43128 -14.14219 -13.80717 -13.68890 -13.54007 -13.33539 -13.30259 -13.05754 -12.90439 -12.77867 -12.51345 -12.30507 -12.02293 -11.94411 -11.68258 -11.44709 -11.34136 -11.13003 -10.72382 -10.47039 -9.50004 -9.36288 -8.72514 -7.95707 -6.46502 0.16605 0.26838 0.85470 0.96674 1.38212 1.47208 1.52276 2.08893 2.19055 2.47633 2.62250 2.85706 3.42311 3.50264 3.92036 3.97525 4.01252 4.04340 4.07434 4.20327 4.30295 4.42218 4.56440 4.60353 4.62702 4.72123 4.80703 4.87515 4.98623 5.03773 5.12469 5.13517 5.19067 5.20932 5.29304 5.36192 5.45673 5.67792 5.77526 5.94567 6.02490 6.28096 6.38696 6.67096 6.75727 6.78312 6.90167 6.93958 8.26281 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.002559 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.494391 B =10939.259520 C =11717.288312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.070 3.930 4 O -0.319 6.319 5 C 0.261 3.739 6 C -0.149 4.149 7 C -0.097 4.097 8 C 0.113 3.887 9 N -0.672 5.672 10 C 0.184 3.816 11 C -0.239 4.239 12 C -0.095 4.095 13 C -0.077 4.077 14 F -0.172 7.172 15 C 0.079 3.921 16 C -0.489 4.489 17 H 0.069 0.931 18 C 0.039 3.961 19 N -0.815 5.815 20 Si 0.983 3.017 21 H -0.264 1.264 22 H -0.259 1.259 23 H -0.265 1.265 24 C -0.193 4.193 25 C 0.079 3.921 26 N -0.518 5.518 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.414 0.586 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.292 0.708 40 H 0.121 0.879 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 -12.016 -1.787 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.006 4.006 4 O -0.228 6.228 5 C 0.081 3.919 6 C -0.170 4.170 7 C -0.126 4.126 8 C 0.012 3.988 9 N -0.296 5.296 10 C 0.088 3.912 11 C -0.260 4.260 12 C -0.114 4.114 13 C -0.098 4.098 14 F -0.152 7.152 15 C 0.075 3.925 16 C -0.518 4.518 17 H 0.088 0.912 18 C -0.177 4.177 19 N -0.441 5.441 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.189 1.189 24 C -0.215 4.215 25 C -0.080 4.080 26 N -0.240 5.240 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.713 -12.247 -1.776 18.471 hybrid contribution 1.437 1.350 -0.270 1.990 sum -12.276 -10.897 -2.045 16.542 Atomic orbital electron populations 1.21670 0.92947 1.03190 1.02475 1.21529 0.97145 0.93568 1.03541 1.22775 0.76793 0.99140 1.01851 1.86181 1.23492 1.24329 1.88784 1.19770 0.89645 0.84702 0.97802 1.21048 0.91767 0.99163 1.04980 1.21403 1.01034 0.90550 0.99620 1.18805 0.93320 0.86110 1.00589 1.41881 1.14465 1.07014 1.66263 1.17557 0.84659 0.96130 0.92901 1.20218 0.96898 1.07162 1.01769 1.20601 0.93873 0.96942 0.99988 1.18179 0.82533 1.07054 1.02025 1.91230 1.41085 1.95929 1.86925 1.17739 0.93703 0.91521 0.89540 1.19687 0.94556 1.03126 1.34469 0.91230 1.26653 0.96853 0.99214 0.94956 1.69809 1.14322 1.25275 1.34658 0.85132 0.78856 0.77341 0.78289 1.18806 1.18286 1.18944 1.20809 0.94322 1.02830 1.03584 1.22248 0.90525 0.94582 1.00684 1.67191 1.40517 0.98531 1.17810 0.92222 0.92193 0.90567 0.90874 0.90912 0.92294 0.92371 0.82425 0.84056 0.74880 0.85969 0.85224 0.89757 0.86156 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.80 6.30 30.59 0.19 -1.61 16 3 C 0.07 1.44 5.31 71.98 0.38 1.82 16 4 O -0.32 -8.27 10.12 -91.00 -0.92 -9.19 16 5 C 0.26 7.35 7.49 84.80 0.63 7.99 16 6 C -0.15 -4.00 10.03 22.45 0.23 -3.77 16 7 C -0.10 -2.89 7.96 22.57 0.18 -2.71 16 8 C 0.11 3.42 6.08 38.23 0.23 3.65 16 9 N -0.67 -22.34 5.48 -180.23 -0.99 -23.33 16 10 C 0.18 7.55 5.94 38.15 0.23 7.78 16 11 C -0.24 -9.47 7.76 22.59 0.18 -9.30 16 12 C -0.09 -4.03 10.00 22.25 0.22 -3.81 16 13 C -0.08 -3.87 7.31 22.90 0.17 -3.70 16 14 F -0.17 -8.77 16.74 44.97 0.75 -8.02 16 15 C 0.08 4.16 5.56 -21.27 -0.12 4.04 16 16 C -0.49 -26.24 8.77 23.43 0.21 -26.03 16 17 H 0.07 3.77 7.75 -2.91 -0.02 3.75 16 18 C 0.04 1.90 5.23 85.25 0.45 2.35 16 19 N -0.82 -39.84 10.84 21.82 0.24 -39.60 16 20 Si 0.98 37.33 29.58 68.60 2.03 39.35 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 23 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 24 C -0.19 -9.26 8.56 22.84 0.20 -9.07 16 25 C 0.08 2.14 11.09 84.79 0.94 3.08 16 26 N -0.52 -14.65 9.20 -308.39 -2.84 -17.49 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 33 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 34 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.14 4.46 6.41 -2.91 -0.02 4.44 16 36 H 0.41 12.42 8.90 -92.71 -0.82 11.59 16 37 H 0.12 4.35 6.55 -2.91 -0.02 4.33 16 38 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 40 H 0.12 5.97 6.18 -2.91 -0.02 5.95 16 41 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -58.39 351.76 3.54 -54.85 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.24 Total: 33.63 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 5.02 Total: -30.21 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.59 Total: -80.42 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.92 Total: -9.19 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.75 Total: -8.02 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.35 kcal Total: -58.39 3.54 -54.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216588387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.609 kcal (2) G-P(sol) polarization free energy of solvation -58.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds