Wall clock time and date at job start Tue Mar 31 2020 10:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 119.99609 * 2 1 4 4 C 1.38238 * 119.99752 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99939 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99696 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47724 * 339.99982 * 6 5 4 8 8 O 1.42901 * 109.47167 * 219.99923 * 6 5 4 9 9 C 1.42895 * 113.99948 * 150.00539 * 8 6 5 10 10 C 1.53006 * 109.47036 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99966 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99729 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47149 * 90.00120 * 17 15 13 19 19 H 1.48501 * 109.47501 * 210.00465 * 17 15 13 20 20 H 1.48501 * 109.46930 * 330.00484 * 17 15 13 21 21 C 1.53005 * 109.46718 * 100.00039 * 6 5 4 22 22 F 1.39908 * 109.46739 * 179.97438 * 21 6 5 23 23 F 1.39898 * 109.47248 * 299.99533 * 21 6 5 24 24 F 1.39897 * 109.47102 * 60.00237 * 21 6 5 25 25 C 1.38234 * 119.99916 * 0.27158 * 5 4 3 26 26 C 1.38233 * 119.99946 * 359.51249 * 25 5 4 27 27 H 1.09009 * 109.47120 * 90.00306 * 1 2 3 28 28 H 1.09006 * 109.47240 * 209.99916 * 1 2 3 29 29 H 1.08994 * 109.47519 * 330.00240 * 1 2 3 30 30 H 1.07996 * 120.00507 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.00387 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47626 * 60.00343 * 9 8 6 33 33 H 1.09001 * 109.47255 * 300.00084 * 9 8 6 34 34 H 1.09001 * 109.47002 * 299.99477 * 10 9 8 35 35 H 1.08993 * 109.46955 * 59.99914 * 10 9 8 36 36 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 37 37 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 38 38 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 39 39 H 1.08992 * 109.47534 * 59.99520 * 12 11 10 40 40 H 0.96996 * 119.99717 * 179.97438 * 16 15 13 41 41 H 1.08000 * 119.99749 * 179.73023 * 25 5 4 42 42 H 1.08006 * 120.00189 * 180.27512 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7786 0.0001 0.0016 7 1 6.1420 0.9655 -0.3507 8 8 6.2550 -1.0327 -0.8635 9 6 7.5147 -0.7447 -1.4736 10 6 7.9242 -1.9124 -2.3736 11 6 9.2726 -1.6038 -3.0274 12 6 9.6819 -2.7711 -3.9278 13 6 11.0103 -2.4675 -4.5713 14 1 11.5123 -1.5350 -4.3596 15 6 11.5844 -3.3798 -5.4311 16 7 12.7435 -3.1145 -5.9931 17 14 10.7158 -4.9923 -5.7979 18 1 9.8253 -4.8187 -6.9736 19 1 11.7242 -6.0422 -6.0915 20 1 9.9073 -5.3981 -4.6202 21 6 6.2886 -0.2491 1.4225 22 9 7.6876 -0.2495 1.4224 23 9 5.8222 0.7621 2.2694 24 9 5.8223 -1.4881 1.8746 25 6 3.5805 -1.1971 -0.0035 26 6 2.1982 -1.1971 0.0004 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 8.2687 -0.6001 -0.6999 33 1 7.4296 0.1623 -2.0721 34 1 8.0093 -2.8197 -1.7754 35 1 7.1702 -2.0566 -3.1473 36 1 9.1873 -0.6966 -3.6256 37 1 10.0269 -1.4593 -2.2538 38 1 9.7672 -3.6786 -3.3299 39 1 8.9276 -2.9153 -4.7012 40 1 13.1475 -3.7564 -6.5977 41 1 4.1206 -2.1324 -0.0071 42 1 1.6581 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:48 Heat of formation + Delta-G solvation = -198.584320 kcal Electronic energy + Delta-G solvation = -26197.168733 eV Core-core repulsion = 21919.373827 eV Total energy + Delta-G solvation = -4277.794906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.25309 -47.79919 -47.70741 -39.99212 -38.33144 -35.06360 -33.70743 -32.30906 -31.26837 -30.27583 -28.86200 -26.60670 -25.00565 -23.41253 -22.99749 -21.69740 -21.16270 -20.10803 -18.78063 -18.70580 -18.25822 -16.88306 -16.60004 -16.43065 -15.61757 -15.47138 -15.09394 -14.63057 -14.55393 -14.32674 -14.16073 -14.14367 -13.99851 -13.91019 -13.88037 -13.81202 -13.68055 -12.87223 -12.77151 -12.60918 -12.49185 -12.18089 -12.00289 -11.64552 -11.55953 -11.35246 -11.25060 -10.80639 -10.73142 -9.97332 -9.87150 -9.72390 -9.61769 -9.22771 -9.17837 -8.97463 -8.52808 -6.03547 -4.01545 0.82504 1.10579 2.46315 3.02081 3.31990 3.34733 3.39395 3.43803 3.62117 3.75276 4.08445 4.37944 4.46479 4.47065 4.57412 4.64218 4.71575 4.99335 5.12441 5.15519 5.22374 5.23514 5.30868 5.38086 5.42630 5.54201 5.68714 5.74573 5.83471 5.91795 6.03384 6.17681 6.25753 6.26646 6.56947 6.63579 6.65324 6.74298 6.94394 7.30300 7.43473 7.80324 8.54581 9.01262 9.59109 11.09932 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.002681 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.849611 B =10442.713654 C =11376.667218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.126 4.126 4 C -0.088 4.088 5 C -0.114 4.114 6 C 0.098 3.902 7 H 0.112 0.888 8 O -0.351 6.351 9 C 0.047 3.953 10 C -0.117 4.117 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.431 3.569 22 F -0.179 7.179 23 F -0.181 7.181 24 F -0.173 7.173 25 C -0.068 4.068 26 C -0.126 4.126 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.497 9.139 16.052 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.115 4.115 6 C 0.038 3.962 7 H 0.129 0.871 8 O -0.270 6.270 9 C -0.029 4.029 10 C -0.155 4.155 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.377 3.623 22 F -0.161 7.161 23 F -0.162 7.162 24 F -0.155 7.155 25 C -0.086 4.086 26 C -0.144 4.144 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.151 0.849 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.435 8.879 15.922 30.487 hybrid contribution 0.084 -0.672 -0.005 0.678 sum -24.351 8.207 15.917 30.227 Atomic orbital electron populations 1.20835 0.90988 1.02949 1.02586 1.20055 0.96289 0.93244 0.97676 1.20958 0.93645 0.97794 1.01976 1.20946 0.94502 0.96880 0.98237 1.19237 0.91455 0.94726 1.06036 1.21822 0.93358 0.95400 0.85652 0.87080 1.88104 1.38659 1.40409 1.59804 1.23153 0.83394 1.00062 0.96273 1.21675 0.99118 0.96669 0.98001 1.21406 0.93120 1.00468 0.98755 1.19561 0.96890 0.93995 0.94628 1.21157 1.03293 1.05359 1.26086 0.91060 1.25049 0.94758 0.98315 0.95494 1.69920 1.17155 1.36279 1.31005 0.86761 0.79559 0.83746 0.79134 1.20306 1.21415 1.18944 1.21407 0.75728 0.74611 0.90584 1.93197 1.29782 1.96216 1.96876 1.93179 1.88506 1.60611 1.73911 1.93186 1.88278 1.43323 1.90702 1.21084 0.94091 0.98008 0.95413 1.21081 0.93929 0.97823 1.01533 0.90865 0.91343 0.91402 0.85565 0.85543 0.91946 0.92391 0.91395 0.91405 0.92603 0.92519 0.96528 0.96978 0.92761 0.84866 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.07 -0.59 5.88 -104.63 -0.62 -1.20 16 3 C -0.13 -1.00 9.70 -39.58 -0.38 -1.39 16 4 C -0.09 -0.77 9.67 -39.58 -0.38 -1.15 16 5 C -0.11 -1.20 4.65 -104.62 -0.49 -1.68 16 6 C 0.10 1.07 2.41 -27.88 -0.07 1.00 16 7 H 0.11 0.96 7.65 -51.93 -0.40 0.57 16 8 O -0.35 -4.59 9.24 -35.23 -0.33 -4.92 16 9 C 0.05 0.62 5.63 37.16 0.21 0.83 16 10 C -0.12 -1.87 5.58 -26.73 -0.15 -2.02 16 11 C -0.10 -1.93 5.15 -26.73 -0.14 -2.06 16 12 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 13 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.06 1.91 5.47 -17.81 -0.10 1.81 16 16 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 17 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 21 C 0.43 5.10 2.85 37.16 0.11 5.20 16 22 F -0.18 -2.29 15.50 2.25 0.03 -2.26 16 23 F -0.18 -2.03 17.02 2.25 0.04 -2.00 16 24 F -0.17 -2.24 16.23 2.25 0.04 -2.21 16 25 C -0.07 -0.72 8.61 -39.58 -0.34 -1.06 16 26 C -0.13 -1.13 9.70 -39.58 -0.38 -1.52 16 27 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.13 0.84 8.04 -52.49 -0.42 0.42 16 32 H 0.06 0.82 6.49 -51.93 -0.34 0.49 16 33 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.13 1.46 7.66 -52.49 -0.40 1.06 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -31.80 361.18 -7.61 -39.42 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.13 Total: -4.14 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.81 Total: -19.25 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.33 Total: -4.92 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.11 Total: -6.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.80 -7.61 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.168 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds