Wall clock time and date at job start Tue Mar 31 2020 10:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 119.99609 * 2 1 4 4 C 1.38238 * 119.99752 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99939 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99696 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47724 * 339.99982 * 6 5 4 8 8 O 1.42901 * 109.47167 * 219.99923 * 6 5 4 9 9 C 1.42895 * 113.99948 * 150.00539 * 8 6 5 10 10 C 1.53006 * 109.47036 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99966 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99729 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47149 * 90.00120 * 17 15 13 19 19 H 1.48501 * 109.47501 * 210.00465 * 17 15 13 20 20 H 1.48501 * 109.46930 * 330.00484 * 17 15 13 21 21 C 1.53005 * 109.46718 * 100.00039 * 6 5 4 22 22 F 1.39908 * 109.46739 * 179.97438 * 21 6 5 23 23 F 1.39898 * 109.47248 * 299.99533 * 21 6 5 24 24 F 1.39897 * 109.47102 * 60.00237 * 21 6 5 25 25 C 1.38234 * 119.99916 * 0.27158 * 5 4 3 26 26 C 1.38233 * 119.99946 * 359.51249 * 25 5 4 27 27 H 1.09009 * 109.47120 * 90.00306 * 1 2 3 28 28 H 1.09006 * 109.47240 * 209.99916 * 1 2 3 29 29 H 1.08994 * 109.47519 * 330.00240 * 1 2 3 30 30 H 1.07996 * 120.00507 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.00387 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47626 * 60.00343 * 9 8 6 33 33 H 1.09001 * 109.47255 * 300.00084 * 9 8 6 34 34 H 1.09001 * 109.47002 * 299.99477 * 10 9 8 35 35 H 1.08993 * 109.46955 * 59.99914 * 10 9 8 36 36 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 37 37 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 38 38 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 39 39 H 1.08992 * 109.47534 * 59.99520 * 12 11 10 40 40 H 0.96996 * 119.99717 * 179.97438 * 16 15 13 41 41 H 1.08000 * 119.99749 * 179.73023 * 25 5 4 42 42 H 1.08006 * 120.00189 * 180.27512 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7786 0.0001 0.0016 7 1 6.1420 0.9655 -0.3507 8 8 6.2550 -1.0327 -0.8635 9 6 7.5147 -0.7447 -1.4736 10 6 7.9242 -1.9124 -2.3736 11 6 9.2726 -1.6038 -3.0274 12 6 9.6819 -2.7711 -3.9278 13 6 11.0103 -2.4675 -4.5713 14 1 11.5123 -1.5350 -4.3596 15 6 11.5844 -3.3798 -5.4311 16 7 12.7435 -3.1145 -5.9931 17 14 10.7158 -4.9923 -5.7979 18 1 9.8253 -4.8187 -6.9736 19 1 11.7242 -6.0422 -6.0915 20 1 9.9073 -5.3981 -4.6202 21 6 6.2886 -0.2491 1.4225 22 9 7.6876 -0.2495 1.4224 23 9 5.8222 0.7621 2.2694 24 9 5.8223 -1.4881 1.8746 25 6 3.5805 -1.1971 -0.0035 26 6 2.1982 -1.1971 0.0004 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 8.2687 -0.6001 -0.6999 33 1 7.4296 0.1623 -2.0721 34 1 8.0093 -2.8197 -1.7754 35 1 7.1702 -2.0566 -3.1473 36 1 9.1873 -0.6966 -3.6256 37 1 10.0269 -1.4593 -2.2538 38 1 9.7672 -3.6786 -3.3299 39 1 8.9276 -2.9153 -4.7012 40 1 13.1475 -3.7564 -6.5977 41 1 4.1206 -2.1324 -0.0071 42 1 1.6581 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:47 Heat of formation + Delta-G solvation = -214.780000 kcal Electronic energy + Delta-G solvation = -26197.871031 eV Core-core repulsion = 21919.373827 eV Total energy + Delta-G solvation = -4278.497204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.18992 -48.73594 -48.66073 -40.69669 -39.23424 -36.59402 -34.78301 -34.05444 -31.91047 -31.41130 -30.19325 -27.26531 -26.65575 -24.20514 -23.78266 -23.10556 -22.00552 -21.65079 -19.71095 -19.63129 -19.17225 -18.86071 -17.64930 -17.26812 -16.73803 -16.34681 -16.11510 -15.83626 -15.57896 -15.49177 -15.22350 -15.09060 -14.93908 -14.86237 -14.83513 -14.74594 -14.59613 -14.31725 -13.86349 -13.82044 -13.53626 -13.12221 -13.10604 -12.88618 -12.76164 -12.39359 -12.27419 -12.09440 -11.88608 -11.76726 -11.48749 -11.42620 -11.29267 -10.88512 -10.76056 -9.87917 -9.61968 -8.29529 -6.33473 0.15488 0.45534 1.36023 1.38060 1.50334 1.58162 2.11867 2.36507 2.56701 2.78301 2.95479 3.05911 3.19405 3.60151 3.70526 3.97085 4.02282 4.03800 4.10876 4.13059 4.36456 4.43198 4.51451 4.53685 4.54794 4.79918 4.83336 4.84907 4.88513 5.07867 5.08735 5.13612 5.16513 5.24569 5.40330 5.46325 5.53938 5.61708 5.65789 5.67386 5.83966 6.02525 6.28731 6.74786 7.31271 8.87249 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.002681 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.849611 B =10442.713654 C =11376.667218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 C -0.129 4.129 4 C -0.092 4.092 5 C -0.132 4.132 6 C 0.100 3.900 7 H 0.136 0.864 8 O -0.363 6.363 9 C 0.051 3.949 10 C -0.109 4.109 11 C -0.093 4.093 12 C -0.013 4.013 13 C -0.533 4.533 14 H 0.033 0.967 15 C 0.001 3.999 16 N -0.952 5.952 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.247 1.247 21 C 0.429 3.571 22 F -0.187 7.187 23 F -0.177 7.177 24 F -0.183 7.183 25 C -0.088 4.088 26 C -0.136 4.136 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.120 0.880 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.232 9.390 16.453 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.040 3.960 7 H 0.153 0.847 8 O -0.282 6.282 9 C -0.024 4.024 10 C -0.146 4.146 11 C -0.130 4.130 12 C -0.051 4.051 13 C -0.571 4.571 14 H 0.051 0.949 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.775 3.225 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.171 1.171 21 C 0.375 3.625 22 F -0.168 7.168 23 F -0.159 7.159 24 F -0.165 7.165 25 C -0.106 4.106 26 C -0.154 4.154 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.186 9.142 16.341 33.011 hybrid contribution 0.935 -0.660 -0.085 1.148 sum -26.251 8.482 16.256 32.021 Atomic orbital electron populations 1.20887 0.89095 1.03933 1.03311 1.20417 0.97769 0.92944 0.96502 1.21326 0.93557 0.98831 1.00992 1.21237 0.95112 0.97052 0.97568 1.19316 0.91091 0.95378 1.07436 1.21981 0.93838 0.95747 0.84432 0.84672 1.88068 1.38209 1.41662 1.60216 1.22989 0.83829 0.99412 0.96189 1.21465 0.97085 0.97676 0.98386 1.21241 0.95029 0.98709 0.98069 1.19539 0.94425 0.95815 0.95307 1.21543 1.05244 1.04001 1.26359 0.94873 1.26058 0.95513 1.02642 0.95333 1.70075 1.19094 1.38001 1.32139 0.85632 0.78586 0.78488 0.79797 1.19013 1.21021 1.17090 1.21633 0.75331 0.74295 0.91278 1.93180 1.30482 1.96234 1.96944 1.93178 1.88415 1.60350 1.73914 1.93163 1.88359 1.44068 1.90900 1.21119 0.94942 0.97757 0.96810 1.21296 0.93512 0.99025 1.01602 0.90132 0.90757 0.90102 0.83100 0.83507 0.91892 0.90606 0.91744 0.90985 0.92441 0.92996 0.96381 0.96168 0.92519 0.86238 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 71.23 0.71 -0.26 16 2 C -0.08 -1.08 5.88 -19.87 -0.12 -1.19 16 3 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 4 C -0.09 -1.41 9.67 22.27 0.22 -1.19 16 5 C -0.13 -2.59 4.65 -19.87 -0.09 -2.68 16 6 C 0.10 2.04 2.41 29.85 0.07 2.11 16 7 H 0.14 2.03 7.65 -2.39 -0.02 2.01 16 8 O -0.36 -9.03 9.24 -148.98 -1.38 -10.41 16 9 C 0.05 1.29 5.63 71.98 0.41 1.69 16 10 C -0.11 -3.30 5.58 30.60 0.17 -3.13 16 11 C -0.09 -3.52 5.15 30.59 0.16 -3.36 16 12 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 13 C -0.53 -31.19 9.66 25.60 0.25 -30.95 16 14 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 15 C 0.00 0.06 5.47 84.66 0.46 0.52 16 16 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 17 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 21 C 0.43 9.77 2.85 71.98 0.20 9.97 16 22 F -0.19 -4.64 15.50 44.97 0.70 -3.94 16 23 F -0.18 -3.78 17.02 44.97 0.77 -3.02 16 24 F -0.18 -4.72 16.23 44.97 0.73 -3.99 16 25 C -0.09 -1.83 8.61 22.27 0.19 -1.64 16 26 C -0.14 -2.32 9.70 22.27 0.22 -2.10 16 27 H 0.08 0.58 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.54 8.09 -2.38 -0.02 0.52 16 29 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 30 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.15 1.54 8.04 -2.91 -0.02 1.51 16 32 H 0.06 1.57 6.49 -2.39 -0.02 1.56 16 33 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 39 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.12 2.69 7.66 -2.91 -0.02 2.67 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -69.22 361.18 7.14 -62.08 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.95 Total: 6.94 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 3.18 Total: -34.22 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.30 Total: -60.23 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.38 Total: -10.41 kcal Atomic # 9 Polarization: -13.14 SS G_CDS: 2.19 Total: -10.94 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -69.22 7.14 -62.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.696 kcal (2) G-P(sol) polarization free energy of solvation -69.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds