Wall clock time and date at job start Tue Mar 31 2020 11:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46925 * 2 1 4 4 F 1.39899 * 109.47255 * 119.99818 * 2 1 3 5 5 C 1.50702 * 109.47284 * 240.00517 * 2 1 3 6 6 C 1.38232 * 120.41285 * 185.00169 * 5 2 1 7 7 C 1.39377 * 118.34983 * 179.97438 * 6 5 2 8 8 O 1.35522 * 120.50627 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99536 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.47142 * 29.99764 * 9 8 7 11 11 C 1.50708 * 109.47294 * 269.99846 * 9 8 7 12 12 H 1.07997 * 119.99792 * 324.82475 * 11 9 8 13 13 C 1.37875 * 119.99900 * 144.81766 * 11 9 8 14 14 N 1.31516 * 119.99661 * 173.01219 * 13 11 9 15 15 Si 1.86800 * 120.00231 * 353.01743 * 13 11 9 16 16 H 1.48503 * 109.47307 * 85.15454 * 15 13 11 17 17 H 1.48504 * 109.46777 * 205.15378 * 15 13 11 18 18 H 1.48499 * 109.47100 * 325.15114 * 15 13 11 19 19 C 1.50697 * 109.47343 * 149.99715 * 9 8 7 20 20 C 1.38235 * 119.99716 * 36.29904 * 19 9 8 21 21 C 1.38239 * 120.00279 * 179.81183 * 20 19 9 22 22 C 1.38236 * 119.99555 * 0.39304 * 21 20 19 23 23 C 1.38238 * 120.00035 * 359.85601 * 22 21 20 24 24 C 1.38231 * 120.00083 * 359.96120 * 23 22 21 25 25 N 1.32820 * 118.98018 * 359.97438 * 7 6 5 26 26 C 1.31765 * 120.71435 * 0.02562 * 25 7 6 27 27 N 1.31793 * 121.81740 * 359.73773 * 26 25 7 28 28 H 1.08998 * 109.46995 * 60.00219 * 1 2 3 29 29 H 1.08995 * 109.47106 * 299.99662 * 1 2 3 30 30 H 1.09003 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46952 * 60.00244 * 3 2 1 32 32 H 1.08994 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47105 * 299.99714 * 3 2 1 34 34 H 1.08007 * 120.82480 * 359.97438 * 6 5 2 35 35 H 0.96998 * 119.99987 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.99976 * 359.97438 * 20 19 9 37 37 H 1.07993 * 120.00546 * 180.22501 * 21 20 19 38 38 H 1.08000 * 120.00137 * 179.83221 * 22 21 20 39 39 H 1.08002 * 120.00034 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00115 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.09367 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0324 -0.7103 -1.2305 6 6 3.3853 -0.9322 -1.4071 7 6 3.8024 -1.5937 -2.5608 8 8 5.1183 -1.8338 -2.7784 9 6 5.4620 -2.5177 -3.9851 10 1 4.7304 -2.2812 -4.7578 11 6 5.4669 -4.0041 -3.7362 12 1 5.7957 -4.3908 -2.7830 13 6 5.0516 -4.8701 -4.7254 14 7 5.1842 -6.1682 -4.5611 15 14 4.3006 -4.1996 -6.2989 16 1 5.3824 -3.8558 -7.2565 17 1 3.4144 -5.2277 -6.9016 18 1 3.5079 -2.9826 -5.9897 19 6 6.8308 -2.0798 -4.4384 20 6 7.8151 -1.8122 -3.5054 21 6 9.0719 -1.4142 -3.9212 22 6 9.3421 -1.2760 -5.2699 23 6 8.3563 -1.5386 -6.2027 24 6 7.1006 -1.9402 -5.7870 25 7 2.8905 -1.9852 -3.4435 26 6 1.6101 -1.7534 -3.2361 27 7 1.1823 -1.1348 -2.1539 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 4.1013 -0.6012 -0.6693 35 1 4.8923 -6.7774 -5.2572 36 1 7.6029 -1.9166 -2.4516 37 1 9.8419 -1.2087 -3.1925 38 1 10.3232 -0.9625 -5.5948 39 1 8.5672 -1.4302 -7.2564 40 1 6.3303 -2.1450 -6.5158 41 1 0.8909 -2.0829 -3.9714 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227840910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:58 Heat of formation + Delta-G solvation = -11.614998 kcal Electronic energy + Delta-G solvation = -26111.708268 eV Core-core repulsion = 22292.710146 eV Total energy + Delta-G solvation = -3818.998122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.80127 -40.80226 -38.92017 -37.55762 -35.01826 -33.25207 -32.00325 -31.43742 -30.66267 -30.29788 -27.64224 -27.39521 -24.63493 -23.83977 -22.99490 -22.05460 -20.94735 -20.22177 -17.96748 -17.53479 -17.29452 -16.26718 -15.93321 -15.61964 -15.29100 -15.08881 -14.92772 -14.62584 -14.56882 -14.20712 -13.83664 -13.27519 -13.13587 -12.97790 -12.87892 -12.72139 -12.52867 -12.37262 -12.16353 -12.10328 -11.87438 -11.33230 -11.17842 -11.10709 -10.96915 -10.54286 -10.41717 -10.24392 -9.88181 -9.79372 -9.63614 -8.94812 -8.80884 -8.54820 -8.34937 -7.97290 -6.32607 -4.37312 1.17411 1.53508 1.94998 1.98671 3.15549 3.25598 3.33246 3.49092 3.86845 4.07424 4.24047 4.37600 4.38940 4.48306 4.65964 4.80005 4.94128 5.02144 5.28158 5.37819 5.42568 5.44661 5.47063 5.57260 5.58968 5.71283 5.76869 5.81454 5.84202 5.98744 6.10384 6.12009 6.15419 6.41476 6.47780 6.57045 6.66577 7.00894 7.04159 7.22636 7.28159 7.31736 7.58932 7.81243 8.23765 8.44537 8.73694 9.26362 10.78281 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.004506 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.700293 B = 6212.662103 C = 7388.329500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 C -0.168 4.168 4 F -0.197 7.197 5 C 0.159 3.841 6 C -0.238 4.238 7 C 0.396 3.604 8 O -0.296 6.296 9 C 0.208 3.792 10 H 0.072 0.928 11 C -0.524 4.524 12 H 0.082 0.918 13 C 0.092 3.908 14 N -0.877 5.877 15 Si 0.856 3.144 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.237 1.237 19 C -0.042 4.042 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.120 4.120 24 C -0.126 4.126 25 N -0.551 5.551 26 C 0.331 3.669 27 N -0.544 5.544 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 14.381 3.466 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.153 3.847 3 C -0.226 4.226 4 F -0.178 7.178 5 C 0.015 3.985 6 C -0.262 4.262 7 C 0.209 3.791 8 O -0.199 6.199 9 C 0.154 3.846 10 H 0.089 0.911 11 C -0.560 4.560 12 H 0.100 0.900 13 C -0.114 4.114 14 N -0.512 5.512 15 Si 0.682 3.318 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.161 1.161 19 C -0.043 4.043 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.161 4.161 23 C -0.138 4.138 24 C -0.145 4.145 25 N -0.281 5.281 26 C 0.043 3.957 27 N -0.264 5.264 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.505 13.896 2.897 14.892 hybrid contribution 0.405 -0.145 -0.466 0.634 sum -4.100 13.750 2.431 14.553 Atomic orbital electron populations 1.22141 0.91584 1.04287 1.03065 1.19516 0.95731 0.90955 0.78538 1.22378 1.02941 0.93302 1.03941 1.92910 1.90448 1.83024 1.51409 1.21377 0.89228 0.93197 0.94675 1.21593 0.97285 1.07665 0.99682 1.20025 0.85770 0.85118 0.88209 1.86196 1.17266 1.71005 1.45407 1.19651 0.90119 0.92349 0.82520 0.91058 1.21004 1.45260 0.86899 1.02860 0.89993 1.24904 0.93753 0.94553 0.98234 1.69882 1.44690 1.02068 1.34594 0.87154 0.80665 0.80712 0.83252 1.19599 1.21046 1.16110 1.20204 0.97023 0.93922 0.93102 1.20926 0.92539 0.98919 0.99769 1.21055 0.96671 1.00778 0.95628 1.20924 0.98714 1.03089 0.93404 1.20936 0.93405 1.00570 0.98908 1.20917 0.97373 1.00948 0.95224 1.68288 1.03357 1.23374 1.33047 1.24649 0.89930 0.88892 0.92241 1.68110 1.39114 1.15318 1.03863 0.89931 0.91684 0.90876 0.90452 0.90836 0.90355 0.83541 0.92021 0.86094 0.86796 0.86962 0.86783 0.86898 0.78846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.18 37.16 0.30 -1.30 16 2 C 0.17 2.13 1.48 -91.77 -0.14 2.00 16 3 C -0.17 -1.59 8.79 37.16 0.33 -1.27 16 4 F -0.20 -2.81 16.67 2.25 0.04 -2.78 16 5 C 0.16 2.46 5.85 -82.31 -0.48 1.98 16 6 C -0.24 -4.09 9.27 -39.16 -0.36 -4.45 16 7 C 0.40 8.11 7.49 -16.70 -0.13 7.99 16 8 O -0.30 -6.60 8.96 -18.26 -0.16 -6.77 16 9 C 0.21 4.92 1.84 -29.03 -0.05 4.87 16 10 H 0.07 1.71 3.75 -51.93 -0.19 1.52 16 11 C -0.52 -14.48 9.17 -34.44 -0.32 -14.80 16 12 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 13 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 14 N -0.88 -26.05 13.96 55.43 0.77 -25.28 16 15 Si 0.86 20.37 25.61 -169.99 -4.35 16.02 16 16 H -0.27 -6.18 6.43 56.52 0.36 -5.82 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.24 -5.36 6.36 56.52 0.36 -5.00 16 19 C -0.04 -0.91 4.98 -104.63 -0.52 -1.43 16 20 C -0.10 -2.05 9.35 -39.58 -0.37 -2.42 16 21 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 22 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 23 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 24 C -0.13 -2.57 9.35 -39.58 -0.37 -2.94 16 25 N -0.55 -11.28 8.81 -14.64 -0.13 -11.40 16 26 C 0.33 5.60 12.28 -92.18 -1.13 4.46 16 27 N -0.54 -8.61 9.18 -10.86 -0.10 -8.71 16 28 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.15 2.24 7.94 -52.48 -0.42 1.82 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.12 2.36 7.67 -52.49 -0.40 1.95 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.11 2.29 5.78 -52.49 -0.30 1.98 16 41 H 0.20 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -31.21 348.78 -8.36 -39.57 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.16 Total: 6.58 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -4.53 Total: -12.50 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.54 Total: -45.39 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.16 Total: -6.77 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.35 Total: 16.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.21 -8.36 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227840910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.957 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds