Wall clock time and date at job start Tue Mar 31 2020 11:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46925 * 2 1 4 4 F 1.39899 * 109.47255 * 119.99818 * 2 1 3 5 5 C 1.50702 * 109.47284 * 240.00517 * 2 1 3 6 6 C 1.38232 * 120.41285 * 185.00169 * 5 2 1 7 7 C 1.39377 * 118.34983 * 179.97438 * 6 5 2 8 8 O 1.35522 * 120.50627 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99536 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.47142 * 29.99764 * 9 8 7 11 11 C 1.50708 * 109.47294 * 269.99846 * 9 8 7 12 12 H 1.07997 * 119.99792 * 324.82475 * 11 9 8 13 13 C 1.37875 * 119.99900 * 144.81766 * 11 9 8 14 14 N 1.31516 * 119.99661 * 173.01219 * 13 11 9 15 15 Si 1.86800 * 120.00231 * 353.01743 * 13 11 9 16 16 H 1.48503 * 109.47307 * 85.15454 * 15 13 11 17 17 H 1.48504 * 109.46777 * 205.15378 * 15 13 11 18 18 H 1.48499 * 109.47100 * 325.15114 * 15 13 11 19 19 C 1.50697 * 109.47343 * 149.99715 * 9 8 7 20 20 C 1.38235 * 119.99716 * 36.29904 * 19 9 8 21 21 C 1.38239 * 120.00279 * 179.81183 * 20 19 9 22 22 C 1.38236 * 119.99555 * 0.39304 * 21 20 19 23 23 C 1.38238 * 120.00035 * 359.85601 * 22 21 20 24 24 C 1.38231 * 120.00083 * 359.96120 * 23 22 21 25 25 N 1.32820 * 118.98018 * 359.97438 * 7 6 5 26 26 C 1.31765 * 120.71435 * 0.02562 * 25 7 6 27 27 N 1.31793 * 121.81740 * 359.73773 * 26 25 7 28 28 H 1.08998 * 109.46995 * 60.00219 * 1 2 3 29 29 H 1.08995 * 109.47106 * 299.99662 * 1 2 3 30 30 H 1.09003 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46952 * 60.00244 * 3 2 1 32 32 H 1.08994 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47105 * 299.99714 * 3 2 1 34 34 H 1.08007 * 120.82480 * 359.97438 * 6 5 2 35 35 H 0.96998 * 119.99987 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.99976 * 359.97438 * 20 19 9 37 37 H 1.07993 * 120.00546 * 180.22501 * 21 20 19 38 38 H 1.08000 * 120.00137 * 179.83221 * 22 21 20 39 39 H 1.08002 * 120.00034 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00115 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.09367 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0324 -0.7103 -1.2305 6 6 3.3853 -0.9322 -1.4071 7 6 3.8024 -1.5937 -2.5608 8 8 5.1183 -1.8338 -2.7784 9 6 5.4620 -2.5177 -3.9851 10 1 4.7304 -2.2812 -4.7578 11 6 5.4669 -4.0041 -3.7362 12 1 5.7957 -4.3908 -2.7830 13 6 5.0516 -4.8701 -4.7254 14 7 5.1842 -6.1682 -4.5611 15 14 4.3006 -4.1996 -6.2989 16 1 5.3824 -3.8558 -7.2565 17 1 3.4144 -5.2277 -6.9016 18 1 3.5079 -2.9826 -5.9897 19 6 6.8308 -2.0798 -4.4384 20 6 7.8151 -1.8122 -3.5054 21 6 9.0719 -1.4142 -3.9212 22 6 9.3421 -1.2760 -5.2699 23 6 8.3563 -1.5386 -6.2027 24 6 7.1006 -1.9402 -5.7870 25 7 2.8905 -1.9852 -3.4435 26 6 1.6101 -1.7534 -3.2361 27 7 1.1823 -1.1348 -2.1539 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 4.1013 -0.6012 -0.6693 35 1 4.8923 -6.7774 -5.2572 36 1 7.6029 -1.9166 -2.4516 37 1 9.8419 -1.2087 -3.1925 38 1 10.3232 -0.9625 -5.5948 39 1 8.5672 -1.4302 -7.2564 40 1 6.3303 -2.1450 -6.5158 41 1 0.8909 -2.0829 -3.9714 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227840910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:58 Heat of formation + Delta-G solvation = -30.026022 kcal Electronic energy + Delta-G solvation = -26112.506630 eV Core-core repulsion = 22292.710146 eV Total energy + Delta-G solvation = -3819.796484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.87168 -42.22713 -40.43230 -39.06941 -36.16659 -35.18007 -33.54489 -32.86252 -32.04598 -31.71004 -29.21628 -28.44066 -26.08616 -25.22422 -24.62001 -23.47267 -22.26062 -21.62774 -19.47266 -19.40120 -18.80279 -17.66207 -17.18561 -16.86054 -16.68911 -16.53866 -16.30636 -16.07808 -15.84629 -15.71134 -15.28255 -14.87263 -14.71271 -14.57132 -14.25314 -13.99867 -13.74445 -13.50702 -13.27876 -13.18421 -12.96026 -12.93010 -12.65784 -12.33424 -12.15673 -12.10919 -11.93085 -11.72865 -11.67934 -11.45831 -11.21058 -10.88734 -10.37895 -10.06582 -9.77272 -9.51759 -8.46928 -6.56616 -0.16396 0.07934 0.50930 0.55578 1.24207 1.31088 1.45088 1.99407 2.24057 2.66196 2.70371 2.83178 3.04632 3.13004 3.41249 3.60781 3.75628 3.86843 3.99567 4.04047 4.13561 4.22455 4.25958 4.31771 4.46485 4.56339 4.69138 4.73476 4.75482 4.78990 4.81610 5.01392 5.09301 5.15078 5.15937 5.20876 5.27473 5.32634 5.60478 5.63525 5.77378 5.88861 5.93847 6.17536 6.32017 6.51333 7.03882 7.12588 8.68575 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.004506 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.700293 B = 6212.662103 C = 7388.329500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 C -0.164 4.164 4 F -0.209 7.209 5 C 0.163 3.837 6 C -0.242 4.242 7 C 0.364 3.636 8 O -0.309 6.309 9 C 0.221 3.779 10 H 0.068 0.932 11 C -0.528 4.528 12 H 0.028 0.972 13 C 0.040 3.960 14 N -0.930 5.930 15 Si 0.916 3.084 16 H -0.252 1.252 17 H -0.283 1.283 18 H -0.223 1.223 19 C -0.077 4.077 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.147 4.147 25 N -0.584 5.584 26 C 0.326 3.674 27 N -0.532 5.532 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.108 0.892 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 17.365 2.514 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.147 3.853 3 C -0.221 4.221 4 F -0.190 7.190 5 C 0.019 3.981 6 C -0.265 4.265 7 C 0.178 3.822 8 O -0.213 6.213 9 C 0.166 3.834 10 H 0.086 0.914 11 C -0.565 4.565 12 H 0.047 0.953 13 C -0.161 4.161 14 N -0.568 5.568 15 Si 0.738 3.262 16 H -0.177 1.177 17 H -0.209 1.209 18 H -0.145 1.145 19 C -0.077 4.077 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.165 4.165 25 N -0.314 5.314 26 C 0.038 3.962 27 N -0.251 5.251 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.177 0.823 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.166 0.834 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.126 0.874 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.381 16.908 1.960 17.577 hybrid contribution 0.391 -0.990 -0.020 1.064 sum -3.990 15.919 1.940 16.525 Atomic orbital electron populations 1.22148 0.89800 1.03868 1.04815 1.19885 0.97067 0.91867 0.76455 1.22401 1.02786 0.91234 1.05725 1.92892 1.90736 1.83506 1.51851 1.22038 0.88520 0.92016 0.95554 1.21789 0.98521 1.07357 0.98833 1.20410 0.85218 0.86813 0.89761 1.86138 1.18819 1.71344 1.44968 1.19338 0.91503 0.89841 0.82684 0.91412 1.21075 1.44921 0.89732 1.00786 0.95339 1.25713 0.94042 0.94519 1.01802 1.70024 1.47006 1.03607 1.36173 0.86233 0.80385 0.80446 0.79138 1.17699 1.20918 1.14546 1.20188 0.96282 0.96766 0.94496 1.21003 0.93912 1.00193 0.99063 1.21447 0.95866 0.99114 0.97263 1.21458 1.00186 1.00597 0.92533 1.21373 0.92163 0.98931 1.01131 1.21070 0.99008 1.02148 0.94297 1.68227 1.04693 1.24508 1.33955 1.25327 0.89313 0.88390 0.93128 1.68246 1.38709 1.14594 1.03559 0.89075 0.89083 0.92367 0.87924 0.91204 0.89319 0.82270 0.91918 0.87322 0.83449 0.82505 0.83308 0.87376 0.75731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.18 71.98 0.59 -2.17 16 2 C 0.17 3.83 1.48 -11.54 -0.02 3.81 16 3 C -0.16 -2.69 8.79 71.98 0.63 -2.06 16 4 F -0.21 -5.72 16.67 44.97 0.75 -4.97 16 5 C 0.16 4.94 5.85 42.46 0.25 5.19 16 6 C -0.24 -8.42 9.27 22.54 0.21 -8.21 16 7 C 0.36 15.48 7.49 84.82 0.63 16.11 16 8 O -0.31 -14.58 8.96 -88.25 -0.79 -15.37 16 9 C 0.22 10.95 1.84 29.10 0.05 11.01 16 10 H 0.07 3.35 3.75 -2.38 -0.01 3.34 16 11 C -0.53 -31.12 9.17 25.60 0.23 -30.89 16 12 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 13 C 0.04 2.34 5.47 84.65 0.46 2.80 16 14 N -0.93 -58.18 13.96 21.45 0.30 -57.88 16 15 Si 0.92 43.10 25.61 68.60 1.76 44.86 16 16 H -0.25 -11.05 6.43 99.48 0.64 -10.41 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.22 -9.81 6.36 99.48 0.63 -9.18 16 19 C -0.08 -3.43 4.98 -19.87 -0.10 -3.53 16 20 C -0.12 -4.97 9.35 22.27 0.21 -4.76 16 21 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 22 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 23 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.15 -5.86 9.35 22.27 0.21 -5.65 16 25 N -0.58 -24.35 8.81 -312.89 -2.76 -27.11 16 26 C 0.33 10.85 12.28 180.89 2.22 13.07 16 27 N -0.53 -16.30 9.18 -188.27 -1.73 -18.03 16 28 H 0.09 1.54 8.01 -2.39 -0.02 1.52 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.21 7.76 -2.39 -0.02 1.19 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.16 4.96 7.94 -2.91 -0.02 4.94 16 35 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.11 4.48 7.67 -2.91 -0.02 4.46 16 37 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 40 H 0.11 4.29 5.78 -2.91 -0.02 4.28 16 41 H 0.23 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -73.50 348.78 4.69 -68.81 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.90 Total: 25.38 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 6.26 Total: -15.71 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.19 Total: -103.01 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.79 Total: -15.37 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.75 Total: -4.97 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.76 Total: 44.86 kcal Total: -73.50 4.69 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227840910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.780 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds