Wall clock time and date at job start Tue Mar 31 2020 11:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 F 1.39905 * 109.47157 * 120.00234 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 C 1.38237 * 120.41456 * 184.72526 * 5 2 1 7 7 C 1.39374 * 118.35103 * 179.74175 * 6 5 2 8 8 O 1.35520 * 120.51130 * 180.26606 * 7 6 5 9 9 C 1.42899 * 117.00026 * 180.27849 * 8 7 6 10 10 H 1.09000 * 109.46744 * 329.98712 * 9 8 7 11 11 C 1.50692 * 109.47496 * 89.99125 * 9 8 7 12 12 H 1.08005 * 119.99954 * 239.99942 * 11 9 8 13 13 C 1.37879 * 120.00006 * 60.00464 * 11 9 8 14 14 N 1.31513 * 120.00152 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99844 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47358 * 59.99730 * 15 13 11 17 17 H 1.48500 * 109.46773 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47195 * 299.99285 * 15 13 11 19 19 C 1.50701 * 109.46692 * 209.99645 * 9 8 7 20 20 C 1.38233 * 119.99987 * 324.71988 * 19 9 8 21 21 C 1.38236 * 119.99909 * 179.79732 * 20 19 9 22 22 C 1.38236 * 119.99751 * 0.43204 * 21 20 19 23 23 C 1.38232 * 120.00355 * 359.82377 * 22 21 20 24 24 C 1.38230 * 119.99767 * 359.97135 * 23 22 21 25 25 N 1.32823 * 118.97913 * 0.52868 * 7 6 5 26 26 C 1.31770 * 120.71513 * 359.72705 * 25 7 6 27 27 N 1.31784 * 121.81445 * 0.02562 * 26 25 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.07999 * 120.82013 * 359.97438 * 6 5 2 35 35 H 0.96998 * 120.00097 * 180.02562 * 14 13 11 36 36 H 1.07999 * 119.99834 * 359.97438 * 20 19 9 37 37 H 1.08003 * 120.00379 * 180.27701 * 21 20 19 38 38 H 1.08009 * 119.99754 * 179.83590 * 22 21 20 39 39 H 1.08004 * 119.99977 * 179.97438 * 23 22 21 40 40 H 1.08007 * 120.00076 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.09114 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.9963 -0.6596 1.1423 5 6 2.0323 -0.7104 -1.2305 6 6 3.3857 -0.9273 -1.4098 7 6 3.8024 -1.5935 -2.5609 8 8 5.1182 -1.8342 -2.7784 9 6 5.4619 -2.5172 -3.9856 10 1 4.6463 -3.1811 -4.2723 11 6 5.6995 -1.5109 -5.0819 12 1 5.0945 -1.5337 -5.9763 13 6 6.6894 -0.5612 -4.9432 14 7 7.4259 -0.5331 -3.8540 15 14 6.9834 0.6866 -6.3019 16 1 5.7491 1.4837 -6.5177 17 1 8.0943 1.5913 -5.9111 18 1 7.3403 -0.0227 -7.5568 19 6 6.7144 -3.3260 -3.7660 20 6 7.7101 -2.8464 -2.9358 21 6 8.8572 -3.5903 -2.7310 22 6 9.0122 -4.8096 -3.3634 23 6 8.0187 -5.2868 -4.1978 24 6 6.8699 -4.5449 -4.3992 25 7 2.8905 -1.9842 -3.4441 26 6 1.6100 -1.7525 -3.2366 27 7 1.1827 -1.1297 -2.1567 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.1020 -0.5923 -0.6743 35 1 8.1220 0.1353 -3.7563 36 1 7.5907 -1.8918 -2.4449 37 1 9.6333 -3.2176 -2.0789 38 1 9.9096 -5.3896 -3.2055 39 1 8.1401 -6.2394 -4.6922 40 1 6.0935 -4.9179 -5.0508 41 1 0.8909 -2.0813 -3.9724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227840916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:00 Heat of formation + Delta-G solvation = -21.479087 kcal Electronic energy + Delta-G solvation = -26268.183073 eV Core-core repulsion = 22448.757212 eV Total energy + Delta-G solvation = -3819.425861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.85305 -42.05446 -40.16584 -38.77177 -36.10595 -35.12036 -33.16490 -32.59182 -31.85065 -31.32316 -28.88365 -28.43152 -25.99518 -25.06764 -24.65993 -23.12819 -22.10092 -21.69753 -19.66957 -18.73107 -18.20786 -17.39307 -17.19549 -16.75239 -16.64516 -16.46586 -16.14197 -16.03294 -15.74795 -15.49266 -15.14767 -14.85472 -14.49036 -14.03013 -13.99118 -13.61233 -13.49384 -13.31152 -13.27139 -13.17875 -12.93594 -12.87391 -12.56387 -12.33449 -12.29916 -12.07362 -11.89324 -11.67677 -11.39486 -11.24555 -11.01662 -10.83544 -10.27244 -9.82790 -9.48687 -9.27965 -8.04627 -6.46762 -0.06585 0.23312 0.73381 0.91381 1.34977 1.35648 1.42861 2.27522 2.31518 2.73523 2.82364 3.06224 3.22656 3.29732 3.50691 3.67114 3.82203 3.89086 4.08950 4.28393 4.33145 4.37850 4.45180 4.57667 4.60258 4.67727 4.73698 4.80331 4.84328 4.96718 5.04409 5.13209 5.14594 5.26518 5.35868 5.37420 5.54094 5.62261 5.80614 5.91317 5.99335 6.08343 6.23448 6.41342 6.50794 6.82078 7.15830 7.30468 8.75068 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.004392 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.678107 B = 6373.107656 C = 7183.525331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.167 3.833 3 C -0.166 4.166 4 F -0.208 7.208 5 C 0.163 3.837 6 C -0.255 4.255 7 C 0.367 3.633 8 O -0.295 6.295 9 C 0.246 3.754 10 H 0.045 0.955 11 C -0.550 4.550 12 H 0.055 0.945 13 C 0.042 3.958 14 N -0.861 5.861 15 Si 0.950 3.050 16 H -0.277 1.277 17 H -0.277 1.277 18 H -0.271 1.271 19 C -0.077 4.077 20 C -0.070 4.070 21 C -0.158 4.158 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.137 4.137 25 N -0.586 5.586 26 C 0.326 3.674 27 N -0.539 5.539 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.265 0.735 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 -0.036 5.951 9.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.148 3.852 3 C -0.224 4.224 4 F -0.189 7.189 5 C 0.019 3.981 6 C -0.279 4.279 7 C 0.181 3.819 8 O -0.196 6.196 9 C 0.193 3.807 10 H 0.063 0.937 11 C -0.586 4.586 12 H 0.073 0.927 13 C -0.163 4.163 14 N -0.496 5.496 15 Si 0.775 3.225 16 H -0.203 1.203 17 H -0.202 1.202 18 H -0.197 1.197 19 C -0.077 4.077 20 C -0.089 4.089 21 C -0.176 4.176 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.155 4.155 25 N -0.318 5.318 26 C 0.038 3.962 27 N -0.260 5.260 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.162 0.838 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.959 -0.206 5.549 9.704 hybrid contribution 1.146 0.824 -0.559 1.518 sum -6.813 0.619 4.990 8.467 Atomic orbital electron populations 1.22125 0.89473 1.04079 1.04653 1.19829 0.97185 0.91464 0.76694 1.22400 1.02433 0.92011 1.05534 1.92881 1.90790 1.83395 1.51845 1.21921 0.88472 0.92112 0.95555 1.21738 0.98308 1.07842 0.99969 1.20564 0.85973 0.86656 0.88742 1.86444 1.17117 1.71056 1.45019 1.18877 0.90900 0.90449 0.80517 0.93709 1.21408 1.18370 1.15259 1.03593 0.92663 1.25683 0.94390 0.98659 0.97595 1.69974 1.19857 1.33174 1.26558 0.85751 0.77731 0.79056 0.79933 1.20285 1.20185 1.19658 1.19978 0.97420 0.93385 0.96959 1.21691 0.92442 0.98090 0.96651 1.21407 0.98369 0.95922 1.01916 1.21300 0.99621 0.96398 0.98049 1.21162 0.93786 1.00618 1.00440 1.21014 0.99325 0.94467 1.00741 1.68227 1.04355 1.26546 1.32655 1.25398 0.89499 0.88408 0.92867 1.68215 1.38641 1.15334 1.03796 0.89350 0.89151 0.91824 0.87766 0.91944 0.89738 0.83759 0.92460 0.84518 0.85866 0.84084 0.83985 0.86652 0.75298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.18 71.98 0.59 -2.31 16 2 C 0.17 4.28 1.48 -11.54 -0.02 4.26 16 3 C -0.17 -3.49 8.79 71.98 0.63 -2.86 16 4 F -0.21 -6.03 16.67 44.97 0.75 -5.28 16 5 C 0.16 5.35 5.85 42.46 0.25 5.60 16 6 C -0.25 -9.91 9.27 22.54 0.21 -9.70 16 7 C 0.37 16.60 7.49 84.82 0.63 17.24 16 8 O -0.29 -15.06 8.33 -88.24 -0.73 -15.79 16 9 C 0.25 12.59 2.37 29.10 0.07 12.65 16 10 H 0.04 2.29 6.93 -2.39 -0.02 2.27 16 11 C -0.55 -29.85 8.89 25.60 0.23 -29.63 16 12 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 13 C 0.04 2.20 5.24 84.66 0.44 2.64 16 14 N -0.86 -45.88 8.50 21.45 0.18 -45.70 16 15 Si 0.95 42.58 29.54 68.60 2.03 44.60 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C -0.08 -3.72 4.80 -19.86 -0.10 -3.82 16 20 C -0.07 -3.32 7.46 22.27 0.17 -3.15 16 21 C -0.16 -6.31 10.05 22.27 0.22 -6.09 16 22 C -0.14 -4.73 10.05 22.27 0.22 -4.51 16 23 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 24 C -0.14 -5.79 9.68 22.27 0.22 -5.57 16 25 N -0.59 -24.51 8.81 -312.89 -2.76 -27.27 16 26 C 0.33 10.76 12.28 180.89 2.22 12.99 16 27 N -0.54 -17.10 9.18 -188.27 -1.73 -18.83 16 28 H 0.09 1.66 8.01 -2.39 -0.02 1.64 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.47 7.75 -2.39 -0.02 1.45 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.14 5.44 7.93 -2.91 -0.02 5.41 16 35 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 36 H 0.14 7.17 5.50 -2.91 -0.02 7.15 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.23 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -63.08 349.36 4.99 -58.09 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.04 Total: 27.26 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 6.22 Total: -17.08 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -4.30 Total: -91.80 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.73 Total: -15.79 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.75 Total: -5.28 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -63.08 4.99 -58.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227840916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.612 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds