Wall clock time and date at job start Tue Mar 31 2020 11:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36342 * 120.87176 * 2 1 4 4 C 1.39995 * 119.89107 * 180.27992 * 3 2 1 5 5 O 1.35583 * 119.20419 * 179.74422 * 4 3 2 6 6 C 1.42909 * 116.99884 * 179.97438 * 5 4 3 7 7 C 1.53934 * 113.73252 * 248.76474 * 6 5 4 8 8 N 1.48185 * 86.09879 * 221.95451 * 7 6 5 9 9 C 1.46904 * 111.06990 * 137.52220 * 8 7 6 10 10 C 1.50700 * 109.47161 * 70.56664 * 9 8 7 11 11 H 1.08001 * 119.99649 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00198 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99887 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00000 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46859 * 90.00586 * 14 12 10 16 16 H 1.48507 * 109.47163 * 209.99850 * 14 12 10 17 17 H 1.48497 * 109.47520 * 330.00283 * 14 12 10 18 18 C 1.47955 * 90.80160 * 24.60213 * 8 7 6 19 19 N 1.31543 * 121.58365 * 359.43453 * 4 3 2 20 20 C 1.33757 * 121.26429 * 0.59084 * 19 4 3 21 21 C 1.40763 * 121.00662 * 179.71119 * 20 19 4 22 22 F 1.35097 * 120.14473 * 359.97438 * 21 20 19 23 23 C 1.36311 * 119.71355 * 179.97438 * 21 20 19 24 24 C 1.39284 * 121.01478 * 359.97438 * 23 21 20 25 25 C 1.36184 * 120.88363 * 359.97438 * 24 23 21 26 26 C 1.40405 * 119.68114 * 0.04043 * 25 24 23 27 27 H 1.09002 * 109.47121 * 90.00426 * 1 2 3 28 28 H 1.09004 * 109.47010 * 210.00233 * 1 2 3 29 29 H 1.09001 * 109.47454 * 329.99953 * 1 2 3 30 30 H 1.08002 * 120.05039 * 359.97438 * 3 2 1 31 31 H 1.08998 * 112.93681 * 20.33172 * 6 5 4 32 32 H 1.09000 * 113.76229 * 336.23702 * 7 6 5 33 33 H 1.09003 * 113.75547 * 107.60208 * 7 6 5 34 34 H 1.08999 * 109.47232 * 190.56603 * 9 8 7 35 35 H 1.09007 * 109.47022 * 310.56903 * 9 8 7 36 36 H 0.97001 * 119.99902 * 179.97438 * 13 12 10 37 37 H 1.08996 * 113.76564 * 221.08242 * 18 8 7 38 38 H 1.09001 * 113.75834 * 89.71655 * 18 8 7 39 39 H 1.08000 * 119.49222 * 180.02562 * 23 21 20 40 40 H 1.07998 * 119.55898 * 180.02562 * 24 23 21 41 41 H 1.08000 * 120.16016 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2065 1.1702 0.0000 4 6 3.6063 1.1463 -0.0059 5 8 4.2880 2.3183 -0.0111 6 6 5.7148 2.2389 -0.0165 7 6 6.3669 2.7169 1.2934 8 7 7.3684 3.3878 0.4316 9 6 7.6761 4.7351 0.9299 10 6 8.4634 4.6293 2.2105 11 1 8.7101 3.6584 2.6140 12 6 8.8679 5.7720 2.8674 13 7 8.5661 6.9543 2.3768 14 14 9.8432 5.6409 4.4552 15 1 11.2947 5.6054 4.1430 16 1 9.5505 6.8162 5.3145 17 1 9.4602 4.3971 5.1703 18 6 6.3999 3.4441 -0.6856 19 7 4.2760 0.0141 -0.0005 20 6 3.6453 -1.1655 -0.0009 21 6 4.3674 -2.3738 -0.0011 22 9 5.7183 -2.3568 -0.0016 23 6 3.6978 -3.5610 -0.0010 24 6 2.3055 -3.5997 0.0000 25 6 1.5743 -2.4508 0.0013 26 6 2.2301 -1.2093 0.0009 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6817 2.1141 -0.0004 31 1 6.0853 1.2747 -0.3646 32 1 5.7474 3.4072 1.8660 33 1 6.7778 1.9095 1.8995 34 1 8.2636 5.2724 0.1855 35 1 6.7473 5.2739 1.1178 36 1 8.8504 7.7583 2.8392 37 1 6.8372 3.2167 -1.6578 38 1 5.7901 4.3475 -0.6930 39 1 4.2554 -4.4860 -0.0008 40 1 1.7990 -4.5536 0.0005 41 1 0.4952 -2.4945 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228694295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:37 Heat of formation + Delta-G solvation = 10.403364 kcal Electronic energy + Delta-G solvation = -25339.710829 eV Core-core repulsion = 21521.667495 eV Total energy + Delta-G solvation = -3818.043334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.90364 -41.25329 -39.66279 -37.90099 -36.19503 -34.67708 -32.84961 -30.62574 -30.06680 -29.06691 -28.22947 -25.69643 -25.19278 -24.13566 -23.65379 -21.98309 -20.92876 -19.48021 -19.01322 -17.93816 -17.72783 -16.52910 -16.30383 -16.02032 -16.00126 -15.47636 -15.30301 -14.85904 -14.57082 -14.26182 -14.16661 -13.91898 -13.40311 -13.32985 -13.05912 -12.81772 -12.79596 -12.36244 -12.25250 -12.07942 -11.91310 -11.61483 -11.49581 -11.42102 -10.91336 -10.63897 -10.34190 -10.30089 -10.02771 -9.76844 -9.66790 -9.16696 -8.74621 -8.48994 -8.18289 -7.84874 -6.04964 -4.06786 0.07955 0.54550 1.59467 2.60905 3.00352 3.32409 3.37867 3.42478 3.72945 3.75407 3.97503 4.35033 4.41024 4.43236 4.52031 4.68033 4.74798 4.83269 4.88422 4.95449 5.06527 5.14475 5.28826 5.31270 5.42316 5.52617 5.53631 5.62494 5.71937 5.84191 5.88321 6.03139 6.08787 6.10430 6.20067 6.36033 6.43876 6.53112 6.65017 7.19671 7.34273 7.61555 7.67669 7.86551 8.08603 8.40061 9.00373 9.57670 11.06367 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.002859 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.629993 B = 9790.966793 C =10448.905813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.000 4.000 3 C -0.173 4.173 4 C 0.367 3.633 5 O -0.292 6.292 6 C 0.049 3.951 7 C 0.014 3.986 8 N -0.471 5.471 9 C 0.163 3.837 10 C -0.511 4.511 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.004 3.996 19 N -0.535 5.535 20 C 0.146 3.854 21 C 0.114 3.886 22 F -0.122 7.122 23 C -0.133 4.133 24 C -0.112 4.112 25 C -0.093 4.093 26 C -0.115 4.115 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.001 0.999 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.900 -19.725 -6.790 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.007 4.007 3 C -0.194 4.194 4 C 0.175 3.825 5 O -0.196 6.196 6 C -0.007 4.007 7 C -0.115 4.115 8 N -0.196 5.196 9 C 0.037 3.963 10 C -0.550 4.550 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.125 4.125 19 N -0.262 5.262 20 C 0.024 3.976 21 C 0.094 3.906 22 F -0.100 7.100 23 C -0.154 4.154 24 C -0.130 4.130 25 C -0.111 4.111 26 C -0.118 4.118 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.166 0.834 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.324 -19.541 -6.840 27.648 hybrid contribution -0.454 0.563 1.053 1.277 sum -18.778 -18.978 -5.787 27.317 Atomic orbital electron populations 1.20884 0.89086 1.03992 1.03451 1.19936 0.96750 0.90984 0.93055 1.20871 0.91500 1.00056 1.06942 1.20038 0.89034 0.85344 0.88073 1.86389 1.22794 1.25113 1.85268 1.25028 0.74713 1.01473 0.99490 1.24199 0.93237 0.99230 0.94873 1.68624 1.26366 1.21279 1.03342 1.20226 0.96161 0.83707 0.96180 1.21092 1.34272 0.92882 1.06705 0.91919 1.24989 0.96274 0.95207 0.98056 1.69958 1.46566 0.97378 1.39823 0.86472 0.80323 0.77544 0.82947 1.20525 1.21244 1.19807 1.24233 0.93733 0.96301 0.98262 1.67624 1.39345 0.97230 1.21991 1.18391 0.89965 0.90616 0.98636 1.17119 0.77383 0.92230 1.03898 1.91547 1.27887 1.97176 1.93406 1.20874 0.95459 0.96793 1.02254 1.20605 0.92643 0.98884 1.00888 1.20976 1.00197 0.90835 0.99120 1.18388 0.92599 0.94612 1.06223 0.89802 0.90404 0.90208 0.83376 0.86187 0.90690 0.89738 0.94682 0.98108 0.92850 0.89417 0.90912 0.84183 0.84772 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.59 36.00 0.35 -0.28 16 2 C 0.00 0.00 5.92 -104.30 -0.62 -0.62 16 3 C -0.17 -2.01 9.64 -39.61 -0.38 -2.39 16 4 C 0.37 5.58 7.49 -17.02 -0.13 5.45 16 5 O -0.29 -4.93 10.12 -18.45 -0.19 -5.12 16 6 C 0.05 0.89 4.32 -25.80 -0.11 0.78 16 7 C 0.01 0.29 7.32 -2.64 -0.02 0.27 16 8 N -0.47 -10.81 6.25 -239.79 -1.50 -12.31 16 9 C 0.16 4.40 4.58 -4.97 -0.02 4.37 16 10 C -0.51 -14.84 8.84 -34.44 -0.30 -15.14 16 11 H 0.06 1.82 7.80 -52.49 -0.41 1.41 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 14 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.00 0.07 7.81 -2.76 -0.02 0.05 16 19 N -0.53 -8.62 8.41 -11.01 -0.09 -8.71 16 20 C 0.15 2.03 6.61 -84.79 -0.56 1.47 16 21 C 0.11 1.47 7.31 -39.32 -0.29 1.18 16 22 F -0.12 -1.81 17.12 2.25 0.04 -1.77 16 23 C -0.13 -1.22 9.92 -39.89 -0.40 -1.61 16 24 C -0.11 -0.80 9.95 -39.93 -0.40 -1.20 16 25 C -0.09 -0.71 9.31 -39.51 -0.37 -1.08 16 26 C -0.12 -1.25 5.74 -106.79 -0.61 -1.86 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.31 6.51 -51.93 -0.34 -0.03 16 29 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 2.20 6.90 -51.93 -0.36 1.84 16 32 H 0.07 1.64 7.79 -51.93 -0.40 1.23 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.00 0.03 7.70 -51.93 -0.40 -0.37 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.07 1.38 7.79 -51.93 -0.40 0.98 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.62 6.43 -52.49 -0.34 0.28 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -33.28 349.93 -9.90 -43.18 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.17 Total: -2.22 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -3.98 Total: -9.06 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.86 Total: -47.39 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.19 Total: -5.12 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.28 -9.90 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228694295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.580 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds