Wall clock time and date at job start Tue Mar 31 2020 11:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36342 * 120.87176 * 2 1 4 4 C 1.39995 * 119.89107 * 180.27992 * 3 2 1 5 5 O 1.35583 * 119.20419 * 179.74422 * 4 3 2 6 6 C 1.42909 * 116.99884 * 179.97438 * 5 4 3 7 7 C 1.53934 * 113.73252 * 248.76474 * 6 5 4 8 8 N 1.48185 * 86.09879 * 221.95451 * 7 6 5 9 9 C 1.46904 * 111.06990 * 137.52220 * 8 7 6 10 10 C 1.50700 * 109.47161 * 70.56664 * 9 8 7 11 11 H 1.08001 * 119.99649 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00198 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99887 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00000 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46859 * 90.00586 * 14 12 10 16 16 H 1.48507 * 109.47163 * 209.99850 * 14 12 10 17 17 H 1.48497 * 109.47520 * 330.00283 * 14 12 10 18 18 C 1.47955 * 90.80160 * 24.60213 * 8 7 6 19 19 N 1.31543 * 121.58365 * 359.43453 * 4 3 2 20 20 C 1.33757 * 121.26429 * 0.59084 * 19 4 3 21 21 C 1.40763 * 121.00662 * 179.71119 * 20 19 4 22 22 F 1.35097 * 120.14473 * 359.97438 * 21 20 19 23 23 C 1.36311 * 119.71355 * 179.97438 * 21 20 19 24 24 C 1.39284 * 121.01478 * 359.97438 * 23 21 20 25 25 C 1.36184 * 120.88363 * 359.97438 * 24 23 21 26 26 C 1.40405 * 119.68114 * 0.04043 * 25 24 23 27 27 H 1.09002 * 109.47121 * 90.00426 * 1 2 3 28 28 H 1.09004 * 109.47010 * 210.00233 * 1 2 3 29 29 H 1.09001 * 109.47454 * 329.99953 * 1 2 3 30 30 H 1.08002 * 120.05039 * 359.97438 * 3 2 1 31 31 H 1.08998 * 112.93681 * 20.33172 * 6 5 4 32 32 H 1.09000 * 113.76229 * 336.23702 * 7 6 5 33 33 H 1.09003 * 113.75547 * 107.60208 * 7 6 5 34 34 H 1.08999 * 109.47232 * 190.56603 * 9 8 7 35 35 H 1.09007 * 109.47022 * 310.56903 * 9 8 7 36 36 H 0.97001 * 119.99902 * 179.97438 * 13 12 10 37 37 H 1.08996 * 113.76564 * 221.08242 * 18 8 7 38 38 H 1.09001 * 113.75834 * 89.71655 * 18 8 7 39 39 H 1.08000 * 119.49222 * 180.02562 * 23 21 20 40 40 H 1.07998 * 119.55898 * 180.02562 * 24 23 21 41 41 H 1.08000 * 120.16016 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2065 1.1702 0.0000 4 6 3.6063 1.1463 -0.0059 5 8 4.2880 2.3183 -0.0111 6 6 5.7148 2.2389 -0.0165 7 6 6.3669 2.7169 1.2934 8 7 7.3684 3.3878 0.4316 9 6 7.6761 4.7351 0.9299 10 6 8.4634 4.6293 2.2105 11 1 8.7101 3.6584 2.6140 12 6 8.8679 5.7720 2.8674 13 7 8.5661 6.9543 2.3768 14 14 9.8432 5.6409 4.4552 15 1 11.2947 5.6054 4.1430 16 1 9.5505 6.8162 5.3145 17 1 9.4602 4.3971 5.1703 18 6 6.3999 3.4441 -0.6856 19 7 4.2760 0.0141 -0.0005 20 6 3.6453 -1.1655 -0.0009 21 6 4.3674 -2.3738 -0.0011 22 9 5.7183 -2.3568 -0.0016 23 6 3.6978 -3.5610 -0.0010 24 6 2.3055 -3.5997 0.0000 25 6 1.5743 -2.4508 0.0013 26 6 2.2301 -1.2093 0.0009 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6817 2.1141 -0.0004 31 1 6.0853 1.2747 -0.3646 32 1 5.7474 3.4072 1.8660 33 1 6.7778 1.9095 1.8995 34 1 8.2636 5.2724 0.1855 35 1 6.7473 5.2739 1.1178 36 1 8.8504 7.7583 2.8392 37 1 6.8372 3.2167 -1.6578 38 1 5.7901 4.3475 -0.6930 39 1 4.2554 -4.4860 -0.0008 40 1 1.7990 -4.5536 0.0005 41 1 0.4952 -2.4945 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228694295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:36 Heat of formation + Delta-G solvation = -13.363381 kcal Electronic energy + Delta-G solvation = -25340.741432 eV Core-core repulsion = 21521.667495 eV Total energy + Delta-G solvation = -3819.073937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87633 -42.20567 -41.07360 -39.14858 -37.17354 -35.50970 -35.04129 -31.70610 -31.01373 -30.60762 -28.92349 -27.47482 -26.95134 -24.98563 -24.74370 -23.51283 -22.08173 -20.99940 -19.94394 -19.08731 -18.63016 -18.57278 -17.38235 -17.14594 -17.02719 -16.76811 -16.52638 -16.31318 -16.03570 -15.52987 -15.32120 -14.88855 -14.60613 -14.17925 -14.14751 -13.92056 -13.80948 -13.78146 -13.62400 -13.38377 -13.23625 -12.88541 -12.79299 -12.65181 -12.43267 -12.27884 -12.23916 -11.64213 -11.45614 -11.26236 -11.07106 -10.75896 -10.68278 -9.77189 -9.61873 -9.05197 -8.28858 -6.39980 -0.70638 -0.30249 0.78867 1.36233 1.38412 1.49675 1.81217 1.82040 2.35276 2.87372 2.89991 3.03291 3.07212 3.14426 3.36932 3.62619 3.66494 3.75161 3.91455 3.97675 4.19189 4.26674 4.30251 4.39340 4.41706 4.51001 4.58142 4.61169 4.71667 4.80200 4.81958 4.86149 4.99325 4.99778 5.09774 5.10835 5.21004 5.38315 5.42455 5.46287 5.67517 5.75276 5.99901 6.13564 6.27690 6.69325 6.73339 7.29699 8.83117 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.002859 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.629993 B = 9790.966793 C =10448.905813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.019 3.981 3 C -0.193 4.193 4 C 0.339 3.661 5 O -0.303 6.303 6 C 0.077 3.923 7 C 0.012 3.988 8 N -0.486 5.486 9 C 0.179 3.821 10 C -0.534 4.534 11 H 0.057 0.943 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.972 3.028 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.267 1.267 18 C 0.007 3.993 19 N -0.574 5.574 20 C 0.112 3.888 21 C 0.063 3.937 22 F -0.148 7.148 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.078 4.078 26 C -0.126 4.126 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.011 0.989 35 H -0.021 1.021 36 H 0.267 0.733 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.985 -22.525 -6.445 32.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.012 3.988 3 C -0.213 4.213 4 C 0.147 3.853 5 O -0.208 6.208 6 C 0.020 3.980 7 C -0.117 4.117 8 N -0.211 5.211 9 C 0.052 3.948 10 C -0.572 4.572 11 H 0.075 0.925 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.796 3.204 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.192 1.192 18 C -0.121 4.121 19 N -0.301 5.301 20 C -0.009 4.009 21 C 0.043 3.957 22 F -0.126 7.126 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.096 4.096 26 C -0.129 4.129 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.182 0.818 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.029 0.971 35 H -0.004 1.004 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.181 0.819 40 H 0.197 0.803 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -21.431 -22.378 -6.508 31.660 hybrid contribution 0.325 1.214 0.892 1.541 sum -21.105 -21.164 -5.616 30.412 Atomic orbital electron populations 1.21067 0.85305 1.05719 1.05128 1.20484 0.98990 0.89605 0.89740 1.21084 0.89862 1.01892 1.08493 1.20428 0.90281 0.84588 0.89967 1.86334 1.21409 1.26745 1.86285 1.24424 0.76179 1.00571 0.96820 1.24141 0.93010 0.98603 0.95972 1.68505 1.28587 1.18932 1.05053 1.19883 0.94445 0.85352 0.95083 1.21369 1.35102 0.92952 1.07806 0.92472 1.25927 0.97106 0.94645 1.01724 1.70072 1.47357 0.98169 1.41433 0.85346 0.78800 0.77942 0.78323 1.19569 1.20133 1.19175 1.24275 0.93013 0.96792 0.98068 1.67459 1.41013 0.98341 1.23299 1.18822 0.91878 0.90058 1.00154 1.17621 0.76755 0.93570 1.07759 1.91467 1.29716 1.97341 1.94108 1.21326 0.96819 0.96142 0.98981 1.21163 0.91523 1.00783 0.98684 1.21504 1.02308 0.89303 0.96515 1.18765 0.91414 0.96723 1.05985 0.87791 0.88003 0.89221 0.81771 0.86514 0.92104 0.90114 0.97133 1.00371 0.92377 0.87201 0.91004 0.81926 0.80280 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.59 71.23 0.68 -0.03 16 2 C 0.02 0.32 5.92 -19.66 -0.12 0.21 16 3 C -0.19 -4.43 9.64 22.25 0.21 -4.22 16 4 C 0.34 10.82 7.49 85.16 0.64 11.46 16 5 O -0.30 -10.86 10.12 -88.92 -0.90 -11.76 16 6 C 0.08 2.97 4.32 31.24 0.13 3.11 16 7 C 0.01 0.53 7.32 86.37 0.63 1.16 16 8 N -0.49 -23.53 6.25 -915.78 -5.72 -29.26 16 9 C 0.18 10.20 4.58 85.56 0.39 10.59 16 10 C -0.53 -32.18 8.84 25.60 0.23 -31.95 16 11 H 0.06 3.43 7.80 -2.91 -0.02 3.40 16 12 C 0.00 0.27 5.46 84.65 0.46 0.74 16 13 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 14 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.01 0.29 7.81 86.41 0.67 0.96 16 19 N -0.57 -19.64 8.41 -302.02 -2.54 -22.18 16 20 C 0.11 3.18 6.61 40.30 0.27 3.45 16 21 C 0.06 1.65 7.31 22.44 0.16 1.82 16 22 F -0.15 -4.72 17.12 44.97 0.77 -3.95 16 23 C -0.11 -1.79 9.92 22.07 0.22 -1.57 16 24 C -0.10 -0.98 9.95 22.04 0.22 -0.76 16 25 C -0.08 -0.82 9.31 22.32 0.21 -0.62 16 26 C -0.13 -2.47 5.74 -21.27 -0.12 -2.59 16 27 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.18 6.51 -2.39 -0.02 0.16 16 29 H 0.09 0.46 8.10 -2.39 -0.02 0.44 16 30 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.12 4.59 6.90 -2.39 -0.02 4.58 16 32 H 0.06 2.86 7.79 -2.39 -0.02 2.84 16 33 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 35 H -0.02 -1.29 7.70 -2.38 -0.02 -1.31 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.83 16 38 H 0.07 2.88 7.79 -2.39 -0.02 2.86 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.18 0.19 8.06 -2.91 -0.02 0.16 16 41 H 0.18 0.35 6.43 -2.91 -0.02 0.33 16 Total: -1.00 -78.39 349.93 -0.13 -78.52 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.05 Total: 6.07 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.90 Total: -8.26 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -7.98 Total: -108.64 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.90 Total: -11.76 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.77 Total: -3.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.39 -0.13 -78.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228694295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.157 kcal (2) G-P(sol) polarization free energy of solvation -78.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds