Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.53007 * 109.46748 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00013 * 269.77843 * 5 4 3 7 7 H 1.08003 * 120.00088 * 322.08330 * 6 5 4 8 8 C 1.38810 * 120.00323 * 142.08814 * 6 5 4 9 9 N 1.31617 * 120.00039 * 156.99944 * 8 6 5 10 10 Si 1.86803 * 120.00094 * 336.99872 * 8 6 5 11 11 H 1.48503 * 109.47104 * 95.69951 * 10 8 6 12 12 H 1.48501 * 109.47006 * 215.70445 * 10 8 6 13 13 H 1.48498 * 109.46652 * 335.70362 * 10 8 6 14 14 C 1.46499 * 120.00397 * 89.77588 * 5 4 3 15 15 C 1.50703 * 109.47088 * 89.99655 * 14 5 4 16 16 N 1.28801 * 124.75123 * 90.00230 * 15 14 5 17 17 C 1.32526 * 117.12321 * 180.02562 * 16 15 14 18 18 C 1.48334 * 122.96593 * 179.97438 * 17 16 15 19 19 C 1.39371 * 120.12114 * 4.72661 * 18 17 16 20 20 C 1.38009 * 119.87307 * 179.79028 * 19 18 17 21 21 C 1.38331 * 120.12720 * 0.46732 * 20 19 18 22 22 C 1.38334 * 120.24630 * 359.78205 * 21 20 19 23 23 C 1.38012 * 120.12122 * 359.97438 * 22 21 20 24 24 C 1.34841 * 114.07067 * 0.02562 * 17 16 15 25 25 S 1.70913 * 124.75590 * 270.02915 * 15 14 5 26 26 H 1.09002 * 109.46824 * 299.99786 * 1 2 3 27 27 H 1.09004 * 109.47475 * 59.99543 * 1 2 3 28 28 H 1.08994 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46824 * 240.00214 * 2 1 3 30 30 H 1.08991 * 109.47150 * 120.00439 * 2 1 3 31 31 H 1.09002 * 109.47187 * 60.00437 * 3 2 1 32 32 H 1.08991 * 109.47557 * 300.00190 * 3 2 1 33 33 H 1.08992 * 109.47145 * 60.00155 * 4 3 2 34 34 H 1.09002 * 109.46621 * 299.99992 * 4 3 2 35 35 H 0.97001 * 120.00178 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47272 * 329.99994 * 14 5 4 37 37 H 1.08993 * 109.47693 * 209.99821 * 14 5 4 38 38 H 1.08000 * 120.06253 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.93974 * 180.24900 * 20 19 18 40 40 H 1.08000 * 119.88209 * 179.76614 * 21 20 19 41 41 H 1.07998 * 119.93568 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.05906 * 180.02562 * 23 22 21 43 43 H 1.07999 * 126.05976 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2904 3.4683 -1.1856 7 1 4.7120 2.9283 -2.0205 8 6 3.9839 4.8160 -1.3145 9 7 4.5875 5.5436 -2.2302 10 14 2.7147 5.5971 -0.1882 11 1 3.4016 6.2420 0.9597 12 1 1.9456 6.6191 -0.9427 13 1 1.7880 4.5509 0.3138 14 6 4.2984 3.5152 1.2689 15 6 5.7203 3.2787 1.7088 16 7 6.7202 4.0271 1.3943 17 6 7.9085 3.6771 1.8652 18 6 9.1463 4.4445 1.5836 19 6 9.0803 5.6429 0.8752 20 6 10.2346 6.3549 0.6198 21 6 11.4567 5.8764 1.0571 22 6 11.5287 4.6849 1.7563 23 6 10.3802 3.9671 2.0216 24 6 7.8933 2.5612 2.6220 25 16 6.2320 1.9794 2.6943 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 4.3736 6.4854 -2.3200 36 1 3.6151 3.1317 2.0267 37 1 4.1319 4.5843 1.1373 38 1 8.1273 6.0151 0.5293 39 1 10.1843 7.2858 0.0744 40 1 12.3579 6.4349 0.8518 41 1 12.4853 4.3162 2.0957 42 1 10.4375 3.0372 2.5679 43 1 8.7479 2.1055 3.0999 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231684576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = 81.393598 kcal Electronic energy + Delta-G solvation = -23508.041437 eV Core-core repulsion = 20259.289647 eV Total energy + Delta-G solvation = -3248.751790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.72434 -38.20581 -36.64563 -34.23767 -32.14746 -31.52013 -30.78761 -29.47049 -28.17430 -26.77524 -24.28936 -23.94497 -22.22214 -21.73600 -21.05073 -20.10524 -19.12047 -17.88379 -16.76790 -16.43073 -15.48451 -15.15512 -14.92529 -14.68575 -14.47701 -14.20496 -13.75878 -13.67125 -13.33652 -13.12928 -13.07609 -12.79836 -12.43649 -12.29340 -12.10111 -11.97063 -11.57610 -11.37655 -10.94922 -10.90154 -10.78483 -10.76343 -10.61479 -10.41345 -10.14336 -9.95200 -9.67084 -9.29436 -9.00534 -8.87147 -8.77053 -8.55379 -7.77681 -7.02323 -6.05100 -3.46300 0.86679 1.58450 1.69493 1.87416 2.24470 3.27671 3.36634 3.43931 3.45998 4.17354 4.47245 4.48064 4.88783 5.00609 5.09575 5.16619 5.24583 5.31619 5.35264 5.47580 5.49283 5.51188 5.65301 5.68949 5.81949 5.84281 5.97543 6.07410 6.08520 6.17875 6.21141 6.25384 6.26482 6.35863 6.42724 6.44453 6.54094 6.63076 6.78106 6.82726 6.83689 7.00494 7.14627 7.94082 8.30876 8.42132 8.84717 9.62330 9.97023 11.09410 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.004233 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.117548 B = 6613.124280 C = 7952.721335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.148 3.852 5 N -0.582 5.582 6 C -0.270 4.270 7 H 0.079 0.921 8 C 0.052 3.948 9 N -0.882 5.882 10 Si 0.864 3.136 11 H -0.282 1.282 12 H -0.298 1.298 13 H -0.262 1.262 14 C 0.197 3.803 15 C 0.084 3.916 16 N -0.453 5.453 17 C 0.113 3.887 18 C -0.013 4.013 19 C -0.080 4.080 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.274 4.274 25 S 0.071 5.929 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -5.858 10.177 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.022 3.978 5 N -0.302 5.302 6 C -0.399 4.399 7 H 0.096 0.904 8 C -0.151 4.151 9 N -0.521 5.521 10 Si 0.693 3.307 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.187 1.187 14 C 0.067 3.933 15 C -0.199 4.199 16 N -0.166 5.166 17 C -0.019 4.019 18 C -0.016 4.016 19 C -0.099 4.099 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.127 4.127 24 C -0.413 4.413 25 S 0.327 5.673 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.815 -6.117 10.195 12.828 hybrid contribution 0.265 0.981 0.290 1.057 sum 5.080 -5.136 10.485 12.733 Atomic orbital electron populations 1.21766 0.96609 1.00691 1.01680 1.21497 0.95233 0.97962 1.01343 1.22190 0.98503 0.94960 1.02221 1.21008 0.91637 0.85660 0.99448 1.44179 1.72850 1.11890 1.01305 1.18675 1.37768 0.93543 0.89932 0.90383 1.25382 0.97125 0.96550 0.96077 1.69886 1.39669 1.06875 1.35674 0.87114 0.83751 0.79269 0.80583 1.20957 1.22529 1.18682 1.20281 0.84661 0.99555 0.88840 1.29105 1.02185 0.92761 0.95889 1.66152 0.97660 1.30982 1.21801 1.18887 0.91908 0.93820 0.97284 1.18148 0.90028 0.94512 0.98866 1.21470 0.99517 0.93464 0.95418 1.21157 0.92394 1.00222 1.00294 1.21183 0.97651 0.96448 0.98663 1.20953 0.97810 0.95638 1.00103 1.21081 0.91562 0.99806 1.00244 1.26709 1.00540 1.02698 1.11401 1.83719 1.01150 1.33168 1.49241 0.93143 0.92832 0.93454 0.92268 0.92672 0.93052 0.91383 0.92626 0.94312 0.92552 0.91669 0.89687 0.84413 0.85845 0.86294 0.86119 0.86133 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.14 -2.37 5.54 -26.73 -0.15 -2.52 16 4 C 0.15 2.80 5.67 -4.04 -0.02 2.77 16 5 N -0.58 -13.30 2.05 -174.61 -0.36 -13.65 16 6 C -0.27 -7.35 9.90 -15.06 -0.15 -7.50 16 7 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 8 C 0.05 1.45 5.29 -17.43 -0.09 1.36 16 9 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 10 Si 0.86 21.37 25.10 -169.99 -4.27 17.11 16 11 H -0.28 -6.92 6.68 56.52 0.38 -6.54 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.26 -6.16 7.11 56.52 0.40 -5.75 16 14 C 0.20 4.24 5.09 -5.19 -0.03 4.21 16 15 C 0.08 1.74 6.95 -13.55 -0.09 1.64 16 16 N -0.45 -10.08 9.93 -8.43 -0.08 -10.17 16 17 C 0.11 2.15 6.64 -84.62 -0.56 1.59 16 18 C -0.01 -0.22 5.88 -104.90 -0.62 -0.84 16 19 C -0.08 -1.41 9.64 -39.24 -0.38 -1.79 16 20 C -0.12 -1.77 10.03 -39.63 -0.40 -2.17 16 21 C -0.12 -1.51 10.04 -39.51 -0.40 -1.90 16 22 C -0.13 -1.55 10.03 -39.63 -0.40 -1.95 16 23 C -0.11 -1.51 9.48 -39.25 -0.37 -1.88 16 24 C -0.27 -4.44 10.62 29.53 0.31 -4.13 16 25 S 0.07 1.17 23.16 -107.50 -2.49 -1.32 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 34 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 37 H 0.09 2.04 3.37 -51.93 -0.18 1.86 16 38 H 0.14 2.75 7.71 -52.49 -0.40 2.35 16 39 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.41 6.69 -52.49 -0.35 1.05 16 43 H 0.17 2.13 6.92 -52.49 -0.36 1.77 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -30.79 368.16 -10.37 -41.16 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.36 Total: 3.43 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.13 Total: -16.38 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.33 Total: -49.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.27 Total: 17.11 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.79 -10.37 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231684576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.551 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds