Wall clock time and date at job start Tue Mar 31 2020 11:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27934 * 124.23319 * 2 1 4 4 C 1.34664 * 117.84129 * 180.02562 * 3 2 1 5 5 C 1.40972 * 129.68957 * 180.02562 * 4 3 2 6 6 C 1.36178 * 120.42400 * 180.25379 * 5 4 3 7 7 C 1.50693 * 119.60876 * 179.74028 * 6 5 4 8 8 N 1.46912 * 109.47237 * 89.99901 * 7 6 5 9 9 C 1.46848 * 110.99757 * 294.20949 * 8 7 6 10 10 C 1.53037 * 109.52040 * 174.15651 * 9 8 7 11 11 C 1.53119 * 109.27711 * 59.18280 * 10 9 8 12 12 C 1.50701 * 109.57448 * 182.40587 * 11 10 9 13 13 H 1.07998 * 119.99948 * 119.71001 * 12 11 10 14 14 C 1.37870 * 120.00103 * 299.71790 * 12 11 10 15 15 N 1.31517 * 120.00296 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00264 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47142 * 59.99477 * 16 14 12 18 18 H 1.48496 * 109.47075 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46517 * 299.99399 * 16 14 12 20 20 C 1.53119 * 109.15788 * 302.34312 * 11 10 9 21 21 C 1.46840 * 111.00226 * 170.00213 * 8 7 6 22 22 C 1.38791 * 120.77909 * 359.52323 * 6 5 4 23 23 C 1.37651 * 120.06518 * 0.45347 * 22 6 5 24 24 C 1.39336 * 119.95501 * 359.78878 * 23 22 6 25 25 S 1.70646 * 124.23862 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46848 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47522 * 300.00493 * 1 2 3 28 28 H 1.09001 * 109.47147 * 60.00288 * 1 2 3 29 29 H 1.08002 * 119.78422 * 359.96831 * 5 4 3 30 30 H 1.09004 * 109.47435 * 209.99806 * 7 6 5 31 31 H 1.09003 * 109.47262 * 330.00102 * 7 6 5 32 32 H 1.08995 * 109.46275 * 294.17820 * 9 8 7 33 33 H 1.09009 * 109.46194 * 54.14248 * 9 8 7 34 34 H 1.09000 * 109.50435 * 299.23654 * 10 9 8 35 35 H 1.09004 * 109.52999 * 179.14335 * 10 9 8 36 36 H 1.09002 * 109.52376 * 62.24586 * 11 10 9 37 37 H 0.97003 * 120.00693 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.50245 * 297.71337 * 20 11 10 39 39 H 1.09006 * 109.53005 * 177.61793 * 20 11 10 40 40 H 1.09012 * 109.46172 * 305.85554 * 21 8 7 41 41 H 1.09000 * 109.46743 * 65.83048 * 21 8 7 42 42 H 1.08003 * 119.96771 * 180.24460 * 22 6 5 43 43 H 1.08006 * 120.01942 * 179.81055 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2267 1.0577 0.0000 4 6 3.5650 0.9078 -0.0005 5 6 4.5805 1.8856 -0.0002 6 6 5.8917 1.5181 -0.0061 7 6 6.9622 2.5787 -0.0115 8 7 7.3164 2.9241 1.3718 9 6 6.1876 3.5631 2.0602 10 6 6.5414 3.7756 3.5339 11 6 7.7889 4.6580 3.6321 12 6 8.1780 4.8231 5.0786 13 1 9.1465 4.4878 5.4190 14 6 7.2974 5.4022 5.9675 15 7 6.1181 5.8109 5.5530 16 14 7.7799 5.6076 7.7604 17 1 8.9936 6.4583 7.8521 18 1 6.6666 6.2527 8.5018 19 1 8.0631 4.2754 8.3525 20 6 8.9362 3.9932 2.8663 21 6 8.5129 3.7743 1.4120 22 6 6.2538 0.1783 -0.0026 23 6 5.2837 -0.7983 -0.0025 24 6 3.9369 -0.4410 -0.0015 25 16 2.4671 -1.4107 -0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.3167 2.9329 0.0001 30 1 7.8444 2.2020 -0.5292 31 1 6.5915 3.4664 -0.5240 32 1 5.9763 4.5258 1.5948 33 1 5.3080 2.9234 1.9864 34 1 6.7393 2.8120 4.0033 35 1 5.7095 4.2637 4.0416 36 1 7.5790 5.6353 3.1974 37 1 5.4986 6.2187 6.1783 38 1 9.1718 3.0330 3.3252 39 1 9.8156 4.6366 2.8965 40 1 9.3225 3.2881 0.8674 41 1 8.2908 4.7362 0.9499 42 1 7.2978 -0.0984 -0.0033 43 1 5.5663 -1.8407 -0.0029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235865860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:16 Heat of formation + Delta-G solvation = 29.874054 kcal Electronic energy + Delta-G solvation = -23595.400157 eV Core-core repulsion = 20344.414312 eV Total energy + Delta-G solvation = -3250.985845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53264 -39.93962 -38.20582 -35.78412 -33.77871 -32.47434 -31.98135 -31.40844 -29.44573 -28.11375 -26.25607 -24.41469 -23.81145 -23.40437 -22.93689 -21.18262 -20.35199 -19.18907 -18.44722 -17.58746 -16.95909 -16.87034 -16.38246 -16.09510 -15.97246 -15.55646 -15.03301 -14.83290 -14.72255 -14.35054 -14.32078 -14.18777 -13.91737 -13.49105 -13.23295 -13.07916 -13.01707 -12.84782 -12.66683 -12.50705 -12.38086 -12.25614 -11.98292 -11.87896 -11.83611 -11.34380 -11.09744 -10.79656 -10.67915 -10.63823 -10.38441 -9.56636 -9.25175 -9.03027 -8.08106 -6.21970 -0.58102 0.07904 0.25236 0.65384 1.33576 1.40258 1.41944 1.49421 2.43193 2.54170 2.88808 3.18207 3.22908 3.58034 3.73446 4.00726 4.13038 4.21529 4.25865 4.28926 4.35637 4.44466 4.49003 4.60641 4.62538 4.64777 4.73036 4.77826 4.87811 4.92107 4.98596 4.99742 5.09341 5.13935 5.18097 5.24032 5.33960 5.51445 5.56611 5.61771 5.71409 5.99012 6.01467 6.24739 6.32053 6.40074 6.60748 6.90410 7.46030 8.96155 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.003178 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.837236 B = 8808.665798 C = 9850.596120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.082 3.918 3 N -0.510 5.510 4 C 0.058 3.942 5 C -0.080 4.080 6 C -0.058 4.058 7 C 0.092 3.908 8 N -0.533 5.533 9 C 0.070 3.930 10 C -0.093 4.093 11 C 0.044 3.956 12 C -0.533 4.533 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.920 5.920 16 Si 0.953 3.047 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.100 4.100 21 C 0.066 3.934 22 C -0.078 4.078 23 C -0.074 4.074 24 C -0.206 4.206 25 S 0.130 5.870 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.055 0.945 36 H -0.013 1.013 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.023 0.977 42 H 0.164 0.836 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -16.252 -16.028 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 N -0.226 5.226 4 C -0.061 4.061 5 C -0.102 4.102 6 C -0.061 4.061 7 C -0.034 4.034 8 N -0.258 5.258 9 C -0.058 4.058 10 C -0.131 4.131 11 C 0.026 3.974 12 C -0.571 4.571 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.779 3.221 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.100 4.100 23 C -0.096 4.096 24 C -0.324 4.324 25 S 0.386 5.614 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.005 0.995 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.041 0.959 42 H 0.182 0.818 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.655 -17.124 -15.718 24.178 hybrid contribution 0.217 2.247 0.914 2.436 sum -6.438 -14.876 -14.804 21.953 Atomic orbital electron populations 1.20745 0.82253 1.05718 1.05371 1.27441 1.03424 0.90708 0.98602 1.66150 1.04709 1.33108 1.18600 1.19278 0.89247 0.92775 1.04795 1.20327 0.91151 0.98007 1.00677 1.19437 0.92789 0.95839 0.98023 1.21169 0.97475 0.95356 0.89448 1.61963 1.04712 1.44626 1.14461 1.22025 0.93246 0.95149 0.95350 1.21390 1.00717 0.97879 0.93119 1.18656 0.92289 0.92601 0.93864 1.21587 1.01128 1.39068 0.95340 0.92865 1.25778 0.94995 0.95226 1.02825 1.70029 1.08123 1.41765 1.36029 0.85688 0.77796 0.78465 0.80179 1.19476 1.21105 1.19669 1.21544 0.97991 0.99790 0.94418 1.22100 0.92387 0.94507 0.97109 1.21337 1.00948 0.90761 0.96912 1.20687 0.88257 1.01454 0.99191 1.24154 1.00541 0.96425 1.11314 1.83482 0.94258 1.09498 1.74212 0.87262 0.88750 0.88127 0.86540 0.86612 0.94084 0.97008 0.92113 0.95430 0.92693 0.99506 0.93213 0.92858 0.92490 0.88215 0.95920 0.81841 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.46 71.24 0.75 -0.34 16 2 C 0.08 1.88 7.29 88.68 0.65 2.52 16 3 N -0.51 -15.61 10.57 -182.51 -1.93 -17.54 16 4 C 0.06 1.80 7.00 39.78 0.28 2.08 16 5 C -0.08 -2.47 7.82 22.46 0.18 -2.29 16 6 C -0.06 -1.54 4.86 -20.21 -0.10 -1.64 16 7 C 0.09 2.40 5.10 85.55 0.44 2.83 16 8 N -0.53 -18.02 4.65 -900.90 -4.19 -22.21 16 9 C 0.07 2.90 5.12 86.33 0.44 3.34 16 10 C -0.09 -4.68 5.12 30.65 0.16 -4.52 16 11 C 0.04 2.30 2.16 -11.46 -0.02 2.28 16 12 C -0.53 -30.30 8.56 25.60 0.22 -30.08 16 13 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 14 C 0.01 0.57 5.31 84.65 0.45 1.02 16 15 N -0.92 -55.17 11.37 21.44 0.24 -54.93 16 16 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C -0.10 -4.11 5.32 30.64 0.16 -3.95 16 21 C 0.07 2.19 5.46 86.33 0.47 2.66 16 22 C -0.08 -1.72 9.68 22.26 0.22 -1.50 16 23 C -0.07 -1.59 10.07 22.40 0.23 -1.36 16 24 C -0.21 -5.33 6.56 22.94 0.15 -5.18 16 25 S 0.13 2.60 23.08 -56.49 -1.30 1.29 16 26 H 0.11 0.82 8.11 -2.39 -0.02 0.80 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.12 3.78 7.90 -2.91 -0.02 3.75 16 30 H 0.12 2.26 7.93 -2.38 -0.02 2.24 16 31 H 0.04 1.08 8.05 -2.39 -0.02 1.06 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 2.48 5.74 -2.38 -0.01 2.47 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 3.15 6.18 -2.39 -0.01 3.14 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.10 2.56 8.02 -2.38 -0.02 2.54 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -70.24 355.63 0.50 -69.74 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.00 Total: 10.91 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.65 Total: -34.13 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -5.87 Total: -94.68 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.30 Total: 1.29 kcal Total: -70.24 0.50 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235865860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.616 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds