Wall clock time and date at job start Tue Mar 31 2020 11:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47377 * 2 1 4 4 N 1.29031 * 124.91633 * 90.01721 * 3 2 1 5 5 C 1.31779 * 117.12361 * 180.02562 * 4 3 2 6 6 C 1.33633 * 114.50423 * 0.02562 * 5 4 3 7 7 C 1.50704 * 126.04190 * 179.74000 * 6 5 4 8 8 N 1.46892 * 109.47620 * 89.99154 * 7 6 5 9 9 C 1.46901 * 111.00266 * 66.04791 * 8 7 6 10 10 C 1.50703 * 109.47044 * 62.89999 * 9 8 7 11 11 H 1.07998 * 119.99818 * 5.13032 * 10 9 8 12 12 C 1.37879 * 120.00050 * 185.13022 * 10 9 8 13 13 N 1.31512 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47347 * 59.99672 * 14 12 10 16 16 H 1.48501 * 109.47063 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47051 * 299.99780 * 14 12 10 18 18 C 1.46901 * 111.00329 * 190.00240 * 8 7 6 19 19 C 1.50699 * 109.47171 * 163.95229 * 18 8 7 20 20 C 1.38230 * 120.00336 * 275.55269 * 19 18 8 21 21 C 1.38236 * 120.00058 * 179.76796 * 20 19 18 22 22 C 1.38228 * 119.99953 * 0.50882 * 21 20 19 23 23 C 1.38242 * 120.00169 * 359.74842 * 22 21 20 24 24 C 1.38233 * 119.99513 * 359.97438 * 23 22 21 25 25 S 1.70980 * 124.91915 * 270.02656 * 3 2 1 26 26 H 1.09001 * 109.47442 * 299.99863 * 1 2 3 27 27 H 1.09001 * 109.46885 * 60.00152 * 1 2 3 28 28 H 1.09004 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47442 * 240.00137 * 2 1 3 30 30 H 1.09007 * 109.47234 * 120.00079 * 2 1 3 31 31 H 1.08001 * 122.74944 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.46824 * 209.99609 * 7 6 5 33 33 H 1.08998 * 109.46298 * 329.99076 * 7 6 5 34 34 H 1.08994 * 109.47752 * 182.90575 * 9 8 7 35 35 H 1.09007 * 109.47012 * 302.90548 * 9 8 7 36 36 H 0.97006 * 119.99147 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.46823 * 283.95765 * 18 8 7 38 38 H 1.09000 * 109.46829 * 43.95208 * 18 8 7 39 39 H 1.08003 * 119.99784 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.99601 * 180.23577 * 21 20 19 41 41 H 1.07994 * 120.00520 * 179.72415 * 22 21 20 42 42 H 1.08001 * 120.00251 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99834 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1170 1.0580 5 6 2.7136 3.3481 0.8794 6 6 2.8404 3.7108 -0.4005 7 6 3.3083 5.0537 -0.8994 8 7 4.7682 5.0346 -1.0609 9 6 5.1678 4.1070 -2.1276 10 6 4.6018 4.5792 -3.4420 11 1 4.0755 5.5207 -3.4962 12 6 4.7558 3.8092 -4.5754 13 7 5.3962 2.6625 -4.5092 14 14 4.0547 4.3949 -6.2048 15 1 4.6697 5.6965 -6.5690 16 1 4.3534 3.3941 -7.2605 17 1 2.5841 4.5599 -6.0802 18 6 5.2875 6.3849 -1.3157 19 6 6.7769 6.4019 -1.0864 20 6 7.2778 6.5818 0.1893 21 6 8.6440 6.5926 0.4003 22 6 9.5092 6.4340 -0.6660 23 6 9.0083 6.2594 -1.9426 24 6 7.6422 6.2429 -2.1527 25 16 2.3580 2.3437 -1.4020 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9482 4.0097 1.7001 32 1 2.8393 5.2681 -1.8596 33 1 3.0324 5.8247 -0.1800 34 1 6.2554 4.0734 -2.1914 35 1 4.7860 3.1106 -1.9046 36 1 5.5041 2.1206 -5.3065 37 1 5.0753 6.6671 -2.3469 38 1 4.8077 7.0923 -0.6393 39 1 6.6018 6.7098 1.0218 40 1 9.0353 6.7294 1.3976 41 1 10.5765 6.4469 -0.5019 42 1 9.6844 6.1359 -2.7758 43 1 7.2508 6.1069 -3.1501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237822334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:15 Heat of formation + Delta-G solvation = 64.911074 kcal Electronic energy + Delta-G solvation = -23794.335515 eV Core-core repulsion = 20544.868989 eV Total energy + Delta-G solvation = -3249.466526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.24159 -38.84158 -36.69119 -33.79528 -32.58968 -31.54019 -30.40178 -29.50125 -27.11551 -26.16867 -24.57756 -23.73767 -22.41412 -22.03107 -21.32166 -19.89739 -18.54546 -17.52914 -16.61707 -16.06983 -15.29620 -14.99403 -14.70611 -14.62461 -14.45838 -14.15765 -13.97568 -13.55184 -13.43307 -13.07950 -12.91886 -12.33741 -12.22755 -12.13279 -11.99945 -11.69369 -11.44746 -11.19775 -11.06367 -10.99021 -10.89260 -10.65788 -10.46141 -10.38720 -10.24119 -10.07142 -9.74331 -9.03527 -8.59324 -8.48254 -8.39784 -8.25046 -8.13277 -7.26814 -6.07687 -4.17389 1.26916 1.85276 1.91028 1.97925 2.45102 3.22163 3.28538 3.30440 3.35627 4.25578 4.34119 4.53174 5.12810 5.15383 5.22694 5.32427 5.33196 5.35358 5.37123 5.48269 5.56149 5.65145 5.83435 5.84461 5.87551 5.89644 6.01556 6.02251 6.10964 6.15119 6.21470 6.33269 6.51325 6.53482 6.62494 6.74010 6.91138 6.99510 7.17148 7.24516 7.48626 7.52105 7.85752 7.93454 8.14329 8.21451 8.26766 8.91545 9.48890 10.96781 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005060 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.224480 B = 5532.334498 C = 7424.353985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C 0.005 3.995 4 N -0.481 5.481 5 C 0.026 3.974 6 C -0.187 4.187 7 C 0.133 3.867 8 N -0.531 5.531 9 C 0.179 3.821 10 C -0.552 4.552 11 H 0.055 0.945 12 C 0.074 3.926 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.093 3.907 19 C -0.057 4.057 20 C -0.105 4.105 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.095 4.095 25 S 0.183 5.817 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 2.220 7.421 8.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.272 4.272 4 N -0.196 5.196 5 C -0.126 4.126 6 C -0.309 4.309 7 C 0.003 3.997 8 N -0.255 5.255 9 C 0.054 3.946 10 C -0.591 4.591 11 H 0.073 0.927 12 C -0.130 4.130 13 N -0.519 5.519 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.034 4.034 19 C -0.057 4.057 20 C -0.124 4.124 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.113 4.113 25 S 0.439 5.561 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.184 0.816 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.646 1.426 7.191 7.794 hybrid contribution -0.262 1.029 -1.091 1.522 sum -2.908 2.454 6.100 7.190 Atomic orbital electron populations 1.21752 0.94168 1.01922 1.02445 1.20087 0.96156 0.88450 1.03694 1.26980 1.05190 1.02022 0.92970 1.66216 1.15075 1.06087 1.32197 1.21472 1.03039 0.92343 0.95721 1.25865 1.07806 1.01431 0.95823 1.20297 0.90259 0.89560 0.99614 1.62612 1.07842 1.07484 1.47562 1.19920 0.96923 0.91866 0.85918 1.21575 1.37143 1.05891 0.94520 0.92733 1.24863 0.94907 0.94720 0.98532 1.69934 1.40805 1.11852 1.29261 0.86867 0.79737 0.78655 0.84077 1.20273 1.21156 1.20234 1.20939 0.90550 0.91280 1.00669 1.19802 0.95569 0.97490 0.92879 1.20960 0.94852 1.00063 0.96507 1.21000 0.93669 1.02067 0.98321 1.21004 0.98997 1.01795 0.93184 1.21100 0.95572 1.01038 0.96790 1.21286 0.92855 0.97335 0.99832 1.84664 1.57096 1.04777 1.09593 0.92251 0.92466 0.91912 0.90006 0.89541 0.81647 0.92454 0.90883 0.94835 0.94195 0.92733 0.92300 0.92099 0.86623 0.86938 0.87029 0.86730 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 37.15 0.37 -1.22 16 2 C -0.04 -0.57 6.52 -27.89 -0.18 -0.75 16 3 C 0.00 0.08 6.64 -13.46 -0.09 -0.01 16 4 N -0.48 -8.69 10.54 -11.86 -0.13 -8.82 16 5 C 0.03 0.46 11.25 -19.19 -0.22 0.25 16 6 C -0.19 -3.48 5.31 -35.92 -0.19 -3.67 16 7 C 0.13 2.43 5.31 -4.98 -0.03 2.41 16 8 N -0.53 -10.69 4.65 -238.97 -1.11 -11.80 16 9 C 0.18 4.32 4.71 -4.97 -0.02 4.30 16 10 C -0.55 -13.82 7.34 -34.44 -0.25 -14.07 16 11 H 0.05 1.35 5.95 -52.49 -0.31 1.04 16 12 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 13 N -0.88 -24.34 13.29 55.43 0.74 -23.61 16 14 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.09 1.69 4.95 -4.98 -0.02 1.67 16 19 C -0.06 -1.02 4.90 -104.63 -0.51 -1.53 16 20 C -0.11 -1.69 9.72 -39.59 -0.38 -2.07 16 21 C -0.13 -1.95 10.05 -39.59 -0.40 -2.34 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -2.07 10.05 -39.58 -0.40 -2.46 16 24 C -0.09 -1.74 8.50 -39.58 -0.34 -2.08 16 25 S 0.18 3.43 21.76 -107.50 -2.34 1.09 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.17 2.56 8.06 -52.49 -0.42 2.13 16 32 H 0.06 1.14 6.59 -51.93 -0.34 0.79 16 33 H 0.07 1.13 7.86 -51.93 -0.41 0.73 16 34 H 0.03 0.90 6.60 -51.93 -0.34 0.55 16 35 H 0.04 1.05 5.95 -51.93 -0.31 0.74 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.06 1.16 6.05 -51.93 -0.31 0.85 16 38 H 0.06 0.95 7.79 -51.93 -0.40 0.55 16 39 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.13 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -28.50 365.90 -11.73 -40.23 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.22 Total: 4.21 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -3.16 Total: -22.10 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.50 Total: -44.22 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.34 Total: 1.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.50 -11.73 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237822334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.142 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds