Wall clock time and date at job start Tue Mar 31 2020 11:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47377 * 2 1 4 4 N 1.29031 * 124.91633 * 90.01721 * 3 2 1 5 5 C 1.31779 * 117.12361 * 180.02562 * 4 3 2 6 6 C 1.33633 * 114.50423 * 0.02562 * 5 4 3 7 7 C 1.50704 * 126.04190 * 179.74000 * 6 5 4 8 8 N 1.46892 * 109.47620 * 89.99154 * 7 6 5 9 9 C 1.46901 * 111.00266 * 66.04791 * 8 7 6 10 10 C 1.50703 * 109.47044 * 62.89999 * 9 8 7 11 11 H 1.07998 * 119.99818 * 5.13032 * 10 9 8 12 12 C 1.37879 * 120.00050 * 185.13022 * 10 9 8 13 13 N 1.31512 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47347 * 59.99672 * 14 12 10 16 16 H 1.48501 * 109.47063 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47051 * 299.99780 * 14 12 10 18 18 C 1.46901 * 111.00329 * 190.00240 * 8 7 6 19 19 C 1.50699 * 109.47171 * 163.95229 * 18 8 7 20 20 C 1.38230 * 120.00336 * 275.55269 * 19 18 8 21 21 C 1.38236 * 120.00058 * 179.76796 * 20 19 18 22 22 C 1.38228 * 119.99953 * 0.50882 * 21 20 19 23 23 C 1.38242 * 120.00169 * 359.74842 * 22 21 20 24 24 C 1.38233 * 119.99513 * 359.97438 * 23 22 21 25 25 S 1.70980 * 124.91915 * 270.02656 * 3 2 1 26 26 H 1.09001 * 109.47442 * 299.99863 * 1 2 3 27 27 H 1.09001 * 109.46885 * 60.00152 * 1 2 3 28 28 H 1.09004 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47442 * 240.00137 * 2 1 3 30 30 H 1.09007 * 109.47234 * 120.00079 * 2 1 3 31 31 H 1.08001 * 122.74944 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.46824 * 209.99609 * 7 6 5 33 33 H 1.08998 * 109.46298 * 329.99076 * 7 6 5 34 34 H 1.08994 * 109.47752 * 182.90575 * 9 8 7 35 35 H 1.09007 * 109.47012 * 302.90548 * 9 8 7 36 36 H 0.97006 * 119.99147 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.46823 * 283.95765 * 18 8 7 38 38 H 1.09000 * 109.46829 * 43.95208 * 18 8 7 39 39 H 1.08003 * 119.99784 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.99601 * 180.23577 * 21 20 19 41 41 H 1.07994 * 120.00520 * 179.72415 * 22 21 20 42 42 H 1.08001 * 120.00251 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99834 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1170 1.0580 5 6 2.7136 3.3481 0.8794 6 6 2.8404 3.7108 -0.4005 7 6 3.3083 5.0537 -0.8994 8 7 4.7682 5.0346 -1.0609 9 6 5.1678 4.1070 -2.1276 10 6 4.6018 4.5792 -3.4420 11 1 4.0755 5.5207 -3.4962 12 6 4.7558 3.8092 -4.5754 13 7 5.3962 2.6625 -4.5092 14 14 4.0547 4.3949 -6.2048 15 1 4.6697 5.6965 -6.5690 16 1 4.3534 3.3941 -7.2605 17 1 2.5841 4.5599 -6.0802 18 6 5.2875 6.3849 -1.3157 19 6 6.7769 6.4019 -1.0864 20 6 7.2778 6.5818 0.1893 21 6 8.6440 6.5926 0.4003 22 6 9.5092 6.4340 -0.6660 23 6 9.0083 6.2594 -1.9426 24 6 7.6422 6.2429 -2.1527 25 16 2.3580 2.3437 -1.4020 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9482 4.0097 1.7001 32 1 2.8393 5.2681 -1.8596 33 1 3.0324 5.8247 -0.1800 34 1 6.2554 4.0734 -2.1914 35 1 4.7860 3.1106 -1.9046 36 1 5.5041 2.1206 -5.3065 37 1 5.0753 6.6671 -2.3469 38 1 4.8077 7.0923 -0.6393 39 1 6.6018 6.7098 1.0218 40 1 9.0353 6.7294 1.3976 41 1 10.5765 6.4469 -0.5019 42 1 9.6844 6.1359 -2.7758 43 1 7.2508 6.1069 -3.1501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237822334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:14 Heat of formation + Delta-G solvation = 49.955801 kcal Electronic energy + Delta-G solvation = -23794.984024 eV Core-core repulsion = 20544.868989 eV Total energy + Delta-G solvation = -3250.115035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63242 -40.15785 -38.22827 -34.97209 -34.51912 -32.84776 -31.66190 -30.94277 -28.91238 -27.45502 -26.10895 -25.33483 -23.64984 -23.29446 -22.75063 -21.39976 -19.94386 -18.98221 -18.39897 -17.43763 -16.88916 -16.53873 -16.21592 -16.00201 -15.85945 -15.37046 -15.22846 -15.09892 -14.74068 -14.53535 -14.16532 -14.02284 -13.59854 -13.39722 -13.22627 -13.00666 -12.98172 -12.81649 -12.54858 -12.46440 -12.36480 -12.07879 -11.95220 -11.91273 -11.69151 -11.65344 -11.63632 -10.54836 -10.44996 -10.00804 -9.67571 -9.64075 -9.47142 -8.97375 -8.08423 -6.24893 -0.12195 0.56395 0.60587 0.64216 1.05178 1.35787 1.37444 1.43298 1.97285 2.38736 2.96368 3.17868 3.30725 3.61782 4.04673 4.08901 4.10680 4.14542 4.28152 4.31861 4.36195 4.38594 4.43415 4.55456 4.66385 4.75315 4.78351 4.84224 4.95204 4.99237 5.01551 5.10335 5.24555 5.28772 5.29927 5.33974 5.42660 5.44154 5.69188 5.72967 5.83265 5.89472 6.10289 6.25480 6.28310 6.49477 6.86618 6.92999 7.44294 8.93608 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005060 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.224480 B = 5532.334498 C = 7424.353985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.026 3.974 4 N -0.496 5.496 5 C 0.032 3.968 6 C -0.203 4.203 7 C 0.136 3.864 8 N -0.530 5.530 9 C 0.201 3.799 10 C -0.543 4.543 11 H 0.053 0.947 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.934 3.066 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.096 3.904 19 C -0.076 4.076 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.122 4.122 25 S 0.124 5.876 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.190 0.810 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.000 1.000 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.035 0.965 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.126 0.874 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 2.779 9.435 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.251 4.251 4 N -0.211 5.211 5 C -0.119 4.119 6 C -0.324 4.324 7 C 0.007 3.993 8 N -0.253 5.253 9 C 0.074 3.926 10 C -0.582 4.582 11 H 0.072 0.928 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.760 3.240 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.031 4.031 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.141 4.141 25 S 0.380 5.620 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.207 0.793 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.018 0.982 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.757 2.015 9.211 9.824 hybrid contribution -0.195 0.844 -1.613 1.831 sum -2.952 2.859 7.598 8.638 Atomic orbital electron populations 1.21722 0.92269 1.03653 1.01996 1.20333 0.97699 0.86137 1.04643 1.27616 1.03115 1.02987 0.91427 1.66306 1.16091 1.06475 1.32242 1.21849 1.01686 0.92477 0.95934 1.25857 1.09355 1.01287 0.95941 1.20341 0.88691 0.90663 0.99625 1.62535 1.09210 1.07980 1.45562 1.19460 0.94495 0.91845 0.86806 1.21728 1.36008 1.05374 0.95062 0.92843 1.25518 0.95390 0.94868 1.01499 1.70053 1.42456 1.13031 1.29867 0.85987 0.79262 0.78150 0.80614 1.19910 1.21123 1.19627 1.20964 0.91439 0.90614 1.00071 1.19853 0.95159 0.98873 0.93798 1.21207 0.96114 0.99556 0.95928 1.21437 0.93041 1.00211 0.99917 1.21393 1.00852 1.00174 0.92234 1.21315 0.94773 1.01067 0.98426 1.21184 0.94359 0.99740 0.98798 1.84847 1.58468 1.06714 1.12008 0.92671 0.92923 0.89116 0.89190 0.88351 0.79275 0.94427 0.87380 0.98210 0.96458 0.92959 0.94696 0.88981 0.84716 0.83461 0.83780 0.85638 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.89 71.98 0.71 -2.07 16 2 C -0.05 -1.18 6.52 29.85 0.19 -0.98 16 3 C 0.03 0.86 6.64 88.52 0.59 1.44 16 4 N -0.50 -17.35 10.54 -191.45 -2.02 -19.37 16 5 C 0.03 1.09 11.25 83.66 0.94 2.03 16 6 C -0.20 -7.50 5.31 24.64 0.13 -7.37 16 7 C 0.14 4.95 5.31 85.56 0.45 5.41 16 8 N -0.53 -21.47 4.65 -909.96 -4.23 -25.70 16 9 C 0.20 10.06 4.71 85.56 0.40 10.47 16 10 C -0.54 -28.18 7.34 25.60 0.19 -27.99 16 11 H 0.05 2.74 5.95 -2.91 -0.02 2.73 16 12 C 0.03 1.49 5.46 84.66 0.46 1.95 16 13 N -0.91 -52.49 13.29 21.45 0.28 -52.21 16 14 Si 0.93 42.69 29.54 68.60 2.03 44.71 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 C 0.10 3.51 4.95 85.56 0.42 3.93 16 19 C -0.08 -2.74 4.90 -19.87 -0.10 -2.83 16 20 C -0.11 -3.29 9.72 22.27 0.22 -3.07 16 21 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 22 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 23 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 24 C -0.12 -4.68 8.50 22.27 0.19 -4.49 16 25 S 0.12 4.75 21.76 -56.49 -1.23 3.52 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.19 5.37 8.06 -2.91 -0.02 5.35 16 32 H 0.04 1.51 6.59 -2.39 -0.02 1.50 16 33 H 0.11 3.13 7.86 -2.39 -0.02 3.11 16 34 H 0.00 -0.01 6.60 -2.39 -0.02 -0.03 16 35 H 0.02 0.95 5.95 -2.38 -0.01 0.94 16 36 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 37 H 0.03 1.43 6.05 -2.39 -0.01 1.41 16 38 H 0.09 2.72 7.79 -2.39 -0.02 2.71 16 39 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -63.62 365.90 1.31 -62.31 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 1.00 Total: 20.97 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 5.48 Total: -34.24 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.96 Total: -97.27 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.23 Total: 3.52 kcal Total: -63.62 1.31 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237822334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.262 kcal (2) G-P(sol) polarization free energy of solvation -63.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds