Wall clock time and date at job start Tue Mar 31 2020 10:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31265 * 119.79547 * 2 1 4 4 C 1.33052 * 121.71774 * 179.97438 * 3 2 1 5 5 C 1.47890 * 119.45090 * 180.02562 * 4 3 2 6 6 C 1.39924 * 120.54507 * 185.86214 * 5 4 3 7 7 C 1.38800 * 118.27287 * 179.97438 * 6 5 4 8 8 O 1.35964 * 120.36324 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00092 * 5.21357 * 8 7 6 10 10 C 1.53002 * 109.47211 * 156.68257 * 9 8 7 11 11 C 1.53000 * 109.47034 * 276.68086 * 9 8 7 12 12 C 1.38827 * 119.26659 * 0.02562 * 7 6 5 13 13 N 1.31939 * 121.04724 * 359.97438 * 12 7 6 14 14 C 1.31871 * 121.89683 * 359.76954 * 13 12 7 15 15 F 1.35102 * 119.69538 * 180.24652 * 14 13 12 16 16 C 1.39941 * 121.09287 * 0.04965 * 4 3 2 17 17 C 1.36582 * 119.46348 * 359.97438 * 16 4 3 18 18 C 1.40941 * 119.79863 * 180.02562 * 2 1 3 19 19 C 1.41039 * 120.55099 * 0.27078 * 18 2 1 20 20 H 1.08002 * 120.00088 * 328.71522 * 19 18 2 21 21 C 1.40021 * 120.00189 * 148.70765 * 19 18 2 22 22 N 1.30798 * 119.99565 * 358.29110 * 21 19 18 23 23 Si 1.86789 * 120.00364 * 178.28372 * 21 19 18 24 24 H 1.48505 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47410 * 120.00250 * 23 21 19 26 26 H 1.48496 * 109.47608 * 240.00484 * 23 21 19 27 27 H 1.09002 * 109.47039 * 269.97547 * 1 2 3 28 28 H 1.08997 * 109.46884 * 29.97398 * 1 2 3 29 29 H 1.09001 * 109.46954 * 149.97507 * 1 2 3 30 30 H 1.07997 * 120.85771 * 359.96390 * 6 5 4 31 31 H 1.09000 * 109.47530 * 36.68236 * 9 8 7 32 32 H 1.09000 * 109.46890 * 59.99588 * 10 9 8 33 33 H 1.08992 * 109.47128 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47193 * 300.00167 * 10 9 8 35 35 H 1.09003 * 109.47049 * 60.00185 * 11 9 8 36 36 H 1.09000 * 109.47310 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47395 * 300.00263 * 11 9 8 38 38 H 1.08001 * 119.47510 * 179.97438 * 12 7 6 39 39 H 1.07997 * 120.26658 * 179.97438 * 16 4 3 40 40 H 1.08001 * 120.78846 * 180.02562 * 17 16 4 41 41 H 0.97002 * 119.99815 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4890 1.1838 0.0005 5 6 4.1726 2.4952 0.0011 6 6 5.5643 2.5718 -0.1215 7 6 6.1568 3.8270 -0.1159 8 8 7.5058 3.9508 -0.2318 9 6 8.2489 2.7540 -0.4715 10 6 9.5827 3.1058 -1.1334 11 6 8.5110 2.0418 0.8571 12 6 5.3567 4.9545 0.0104 13 7 4.0464 4.8499 0.1242 14 6 3.4378 3.6800 0.1191 15 9 2.0927 3.6249 0.2336 16 6 4.2515 0.0103 0.0000 17 6 3.6204 -1.2009 -0.0005 18 6 2.2074 -1.2231 -0.0005 19 6 1.5097 -2.4488 -0.0068 20 1 0.5459 -2.5240 0.4747 21 6 2.0664 -3.5681 -0.6375 22 7 3.2181 -3.4684 -1.2496 23 14 1.1647 -5.2036 -0.6046 24 1 -0.1077 -5.0523 0.1461 25 1 0.8704 -5.6347 -1.9949 26 1 2.0140 -6.2239 0.0607 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 6.1620 1.6774 -0.2177 31 1 7.6788 2.0978 -1.1291 32 1 10.1528 3.7619 -0.4757 33 1 10.1497 2.1929 -1.3158 34 1 9.3960 3.6131 -2.0798 35 1 7.5608 1.7912 1.3287 36 1 9.0775 1.1287 0.6743 37 1 9.0811 2.6979 1.5147 38 1 5.8142 5.9328 0.0156 39 1 5.3303 0.0621 0.0000 40 1 4.1878 -2.1199 -0.0004 41 1 3.6040 -4.2439 -1.6862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238887507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:31 Heat of formation + Delta-G solvation = -27.265194 kcal Electronic energy + Delta-G solvation = -25853.272890 eV Core-core repulsion = 22033.596125 eV Total energy + Delta-G solvation = -3819.676765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.01536 -40.42513 -38.77162 -37.99491 -34.55198 -33.34396 -33.00289 -31.17409 -30.64278 -29.21866 -27.45606 -27.10843 -25.57854 -23.93235 -23.01807 -21.50831 -20.83070 -20.22207 -18.05301 -17.63845 -17.26561 -16.98343 -15.77233 -15.61541 -15.14702 -14.96858 -14.73671 -14.63486 -14.11024 -13.81631 -13.36212 -13.26978 -12.96149 -12.90062 -12.61053 -12.46318 -12.39415 -12.12271 -11.93607 -11.79095 -11.73946 -11.65210 -11.43956 -11.39673 -11.01657 -10.99359 -10.80149 -10.77672 -10.04668 -9.74860 -9.44869 -9.40381 -8.42398 -8.19276 -8.10873 -7.32493 -7.03885 -4.72516 1.07744 1.45652 2.49248 2.81694 2.88099 2.93542 3.02605 3.10685 3.65688 3.95832 4.17246 4.45461 4.61528 4.72419 4.83720 4.88724 5.00824 5.11573 5.35905 5.37804 5.39266 5.55590 5.60180 5.68880 5.72434 5.89795 5.93429 6.02246 6.09500 6.21864 6.26932 6.44488 6.57721 6.65331 6.70084 6.74297 6.88004 6.98347 7.17056 7.34962 7.50563 7.63592 7.73911 8.04886 8.17878 8.39181 8.46230 9.41061 9.80297 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.003886 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.324786 B = 7203.594437 C = 8909.028840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.021 3.979 3 N -0.434 5.434 4 C -0.009 4.009 5 C -0.006 4.006 6 C -0.165 4.165 7 C 0.076 3.924 8 O -0.305 6.305 9 C 0.074 3.926 10 C -0.146 4.146 11 C -0.183 4.183 12 C 0.070 3.930 13 N -0.478 5.478 14 C 0.268 3.732 15 F -0.093 7.093 16 C -0.121 4.121 17 C -0.136 4.136 18 C 0.073 3.927 19 C -0.422 4.422 20 H 0.090 0.910 21 C 0.066 3.934 22 N -0.785 5.785 23 Si 0.922 3.078 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.164 0.836 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 4.318 0.532 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.126 4.126 3 N -0.142 5.142 4 C -0.142 4.142 5 C -0.010 4.010 6 C -0.192 4.192 7 C 0.029 3.971 8 O -0.219 6.219 9 C 0.018 3.982 10 C -0.203 4.203 11 C -0.240 4.240 12 C -0.088 4.088 13 N -0.192 5.192 14 C 0.112 3.888 15 F -0.072 7.072 16 C -0.141 4.141 17 C -0.160 4.160 18 C 0.068 3.932 19 C -0.451 4.451 20 H 0.108 0.892 21 C -0.153 4.153 22 N -0.409 5.409 23 Si 0.746 3.254 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.195 1.195 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.181 0.819 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.395 5.849 0.486 10.243 hybrid contribution 0.535 -2.589 -0.177 2.649 sum 8.930 3.261 0.310 9.511 Atomic orbital electron populations 1.20292 0.90655 1.01502 1.00679 1.21158 0.95427 0.87805 1.08190 1.66923 1.08013 1.30414 1.08820 1.18414 0.89469 0.89570 1.16726 1.19314 0.92111 0.92683 0.96910 1.21619 0.94150 0.97163 1.06252 1.19852 0.83709 0.94475 0.99113 1.86092 1.14755 1.34279 1.86731 1.22460 0.92874 0.85767 0.97122 1.21829 0.94744 1.02672 1.01063 1.22414 1.03241 1.00960 0.97411 1.21566 0.86238 0.97205 1.03782 1.66933 1.11054 1.27145 1.14111 1.18079 0.79581 0.88504 1.02605 1.91654 1.26505 1.96383 1.92659 1.21233 0.98301 0.93367 1.01241 1.21507 0.94854 0.96760 1.02894 1.18537 0.92609 0.93268 0.88776 1.19790 1.04309 0.93037 1.27925 0.89159 1.26131 0.94710 1.01368 0.93093 1.69727 1.15384 1.32208 1.23577 0.86008 0.80419 0.79768 0.79250 1.17970 1.19514 1.19481 0.93042 0.92817 0.91315 0.83587 0.90725 0.91518 0.90507 0.91633 0.91527 0.90887 0.91442 0.81913 0.88297 0.84535 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.60 36.01 0.35 -1.16 16 2 C 0.02 0.52 6.86 -81.81 -0.56 -0.04 16 3 N -0.43 -10.67 8.25 -5.40 -0.04 -10.71 16 4 C -0.01 -0.20 6.73 -82.75 -0.56 -0.75 16 5 C -0.01 -0.12 5.89 -104.69 -0.62 -0.73 16 6 C -0.17 -2.81 7.60 -38.74 -0.29 -3.11 16 7 C 0.08 1.18 6.59 -39.16 -0.26 0.92 16 8 O -0.31 -4.09 9.82 -19.63 -0.19 -4.28 16 9 C 0.07 0.81 2.86 -26.73 -0.08 0.73 16 10 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 11 C -0.18 -1.85 9.15 37.16 0.34 -1.51 16 12 C 0.07 1.11 11.13 -17.29 -0.19 0.92 16 13 N -0.48 -9.07 10.35 -13.10 -0.14 -9.20 16 14 C 0.27 5.62 8.40 -16.91 -0.14 5.48 16 15 F -0.09 -2.10 15.35 2.25 0.03 -2.07 16 16 C -0.12 -2.68 9.39 -39.54 -0.37 -3.05 16 17 C -0.14 -3.25 8.70 -39.01 -0.34 -3.59 16 18 C 0.07 1.81 5.58 -106.64 -0.59 1.21 16 19 C -0.42 -9.93 8.00 -37.85 -0.30 -10.23 16 20 H 0.09 2.01 7.07 -52.49 -0.37 1.64 16 21 C 0.07 1.48 5.39 -17.32 -0.09 1.38 16 22 N -0.78 -18.10 10.61 55.55 0.59 -17.51 16 23 Si 0.92 16.66 29.56 -169.99 -5.02 11.64 16 24 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 25 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 26 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.34 6.86 -51.93 -0.36 0.98 16 30 H 0.15 2.24 3.77 -52.49 -0.20 2.04 16 31 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.10 1.88 6.25 -52.49 -0.33 1.55 16 40 H 0.14 3.29 6.16 -52.49 -0.32 2.97 16 41 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -27.41 343.34 -7.74 -35.15 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.78 Total: 6.22 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.36 Total: -14.40 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.41 Total: -37.43 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.19 Total: -4.28 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.03 Total: -2.07 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.02 Total: 11.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.41 -7.74 -35.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238887507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.884 kcal (2) G-P(sol) polarization free energy of solvation -27.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds