Wall clock time and date at job start Tue Mar 31 2020 10:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38904 * 119.24170 * 2 1 4 4 C 1.36859 * 119.81922 * 180.02562 * 3 2 1 5 5 C 1.41141 * 118.40091 * 359.72388 * 4 3 2 6 6 C 1.40815 * 120.72813 * 180.28604 * 5 4 3 7 7 H 1.08001 * 119.99707 * 150.11410 * 6 5 4 8 8 C 1.40074 * 120.00264 * 330.12082 * 6 5 4 9 9 N 1.30770 * 119.99593 * 348.28952 * 8 6 5 10 10 Si 1.86795 * 120.00236 * 168.29154 * 8 6 5 11 11 H 1.48503 * 109.47091 * 89.99779 * 10 8 6 12 12 H 1.48501 * 109.47392 * 209.99804 * 10 8 6 13 13 H 1.48503 * 109.47261 * 330.00213 * 10 8 6 14 14 C 1.41958 * 118.54671 * 0.51492 * 5 4 3 15 15 C 1.47587 * 120.00097 * 179.74763 * 14 5 4 16 16 C 1.40016 * 120.62170 * 305.49372 * 15 14 5 17 17 C 1.38311 * 118.37018 * 180.02562 * 16 15 14 18 18 C 1.38540 * 119.53502 * 359.97438 * 17 16 15 19 19 N 1.31728 * 121.24727 * 0.02562 * 18 17 16 20 20 C 1.32590 * 121.76994 * 359.97438 * 19 18 17 21 21 C 1.48100 * 119.83753 * 179.97438 * 20 19 18 22 22 C 1.39489 * 120.13387 * 136.63969 * 21 20 19 23 23 C 1.37980 * 119.86374 * 179.76213 * 22 21 20 24 24 C 1.38352 * 120.13000 * 0.51122 * 23 22 21 25 25 C 1.38350 * 120.27766 * 359.74224 * 24 23 22 26 26 C 1.37974 * 120.13456 * 359.97438 * 25 24 23 27 27 N 1.31694 * 119.23545 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46943 * 270.02555 * 1 2 3 29 29 H 1.09001 * 109.46938 * 30.02081 * 1 2 3 30 30 H 1.08993 * 109.47457 * 150.01849 * 1 2 3 31 31 H 1.08001 * 120.09656 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.80255 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99888 * 180.02562 * 9 8 6 34 34 H 1.08003 * 120.81546 * 0.04103 * 16 15 14 35 35 H 1.07997 * 120.23097 * 179.97438 * 17 16 15 36 36 H 1.07996 * 119.37910 * 180.02562 * 18 17 16 37 37 H 1.08004 * 120.07216 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.93553 * 180.26957 * 23 22 21 39 39 H 1.08002 * 119.85931 * 179.75948 * 24 23 22 40 40 H 1.07997 * 119.93558 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.06957 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1856 1.2120 0.0000 4 6 3.5541 1.2258 -0.0005 5 6 4.2379 -0.0089 0.0049 6 6 5.6454 -0.0518 0.0107 7 1 6.1585 -0.8779 0.4806 8 6 6.3800 0.9768 -0.5929 9 7 5.7761 1.8513 -1.3549 10 14 8.2223 1.0993 -0.3095 11 1 8.9363 0.3160 -1.3497 12 1 8.6415 2.5219 -0.3864 13 1 8.5538 0.5574 1.0328 14 6 3.4757 -1.2065 -0.0005 15 6 4.1578 -2.5153 -0.0007 16 6 5.1115 -2.8224 -0.9787 17 6 5.7217 -4.0628 -0.9351 18 6 5.3774 -4.9585 0.0642 19 7 4.4777 -4.6521 0.9762 20 6 3.8617 -3.4780 0.9823 21 6 2.8564 -3.1787 2.0279 22 6 2.8489 -1.9333 2.6560 23 6 1.9067 -1.6587 3.6259 24 6 0.9774 -2.6194 3.9832 25 6 0.9831 -3.8583 3.3676 26 6 1.9165 -4.1429 2.3921 27 7 2.1502 -1.1492 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6348 2.1411 0.0004 32 1 4.0978 2.1591 -0.0001 33 1 6.2848 2.5634 -1.7732 34 1 5.3647 -2.1080 -1.7482 35 1 6.4613 -4.3313 -1.6749 36 1 5.8557 -5.9262 0.0961 37 1 3.5768 -1.1842 2.3814 38 1 1.8971 -0.6933 4.1099 39 1 0.2444 -2.4011 4.7457 40 1 0.2554 -4.6043 3.6510 41 1 1.9197 -5.1102 1.9120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239878350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:08 Heat of formation + Delta-G solvation = 65.900947 kcal Electronic energy + Delta-G solvation = -25878.103689 eV Core-core repulsion = 22493.236136 eV Total energy + Delta-G solvation = -3384.867553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45187 -39.96642 -39.41002 -36.14618 -34.48268 -33.75527 -32.70772 -31.73064 -31.65412 -30.11756 -29.45359 -26.39111 -24.92031 -24.74724 -23.20339 -22.71565 -22.10053 -21.89967 -19.25172 -18.36997 -17.50937 -17.39465 -16.92233 -16.83366 -16.18773 -15.79908 -15.59685 -15.51240 -14.91470 -14.62621 -14.53638 -14.23556 -14.20232 -13.93636 -13.71586 -13.50638 -13.39527 -13.25876 -13.11214 -12.83740 -12.73622 -12.64304 -12.24568 -12.01103 -11.90905 -11.68979 -11.22527 -10.75456 -10.50878 -10.34355 -10.06290 -9.84836 -9.70762 -9.37217 -8.96680 -8.66108 -6.41757 -0.15687 0.26713 0.60151 0.82215 0.86706 1.13377 1.34392 1.43988 1.47961 2.13709 2.69660 2.82181 3.10246 3.34902 3.59571 3.75457 4.01046 4.09828 4.17518 4.20496 4.28371 4.31958 4.39016 4.48521 4.59132 4.62609 4.72484 4.76959 4.81619 4.94819 4.98737 5.03350 5.10385 5.16986 5.19443 5.22603 5.31857 5.37708 5.48697 5.60297 5.66277 5.75251 5.79836 5.89478 5.97455 6.06308 6.18460 6.48051 6.72993 6.79392 7.07713 7.76123 8.22643 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011345 B = 0.006311 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.416756 B = 4435.537056 C = 5766.776487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.005 4.005 3 C -0.147 4.147 4 C -0.143 4.143 5 C 0.060 3.940 6 C -0.464 4.464 7 H 0.070 0.930 8 C 0.043 3.957 9 N -0.819 5.819 10 Si 0.971 3.029 11 H -0.258 1.258 12 H -0.264 1.264 13 H -0.265 1.265 14 C 0.021 3.979 15 C -0.036 4.036 16 C -0.069 4.069 17 C -0.167 4.167 18 C 0.083 3.917 19 N -0.494 5.494 20 C 0.142 3.858 21 C -0.031 4.031 22 C -0.096 4.096 23 C -0.130 4.130 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.101 4.101 27 N -0.451 5.451 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.292 0.708 34 H 0.123 0.877 35 H 0.168 0.832 36 H 0.193 0.807 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 -6.225 4.164 8.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.147 4.147 3 C -0.167 4.167 4 C -0.169 4.169 5 C 0.056 3.944 6 C -0.493 4.493 7 H 0.089 0.911 8 C -0.173 4.173 9 N -0.444 5.444 10 Si 0.792 3.208 11 H -0.182 1.182 12 H -0.189 1.189 13 H -0.189 1.189 14 C -0.118 4.118 15 C -0.039 4.039 16 C -0.095 4.095 17 C -0.186 4.186 18 C -0.076 4.076 19 N -0.202 5.202 20 C 0.006 3.994 21 C -0.032 4.032 22 C -0.115 4.115 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.120 4.120 27 N -0.159 5.159 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.185 0.815 36 H 0.210 0.790 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.732 -7.384 4.639 9.485 hybrid contribution 1.816 2.137 -1.051 2.995 sum -1.916 -5.246 3.588 6.639 Atomic orbital electron populations 1.20319 0.88510 1.01939 1.01772 1.20960 0.96914 0.87965 1.08826 1.21541 0.94830 0.98572 1.01780 1.21371 0.93605 0.98156 1.03751 1.18560 0.94613 0.91311 0.89952 1.19460 0.91165 1.06571 1.32134 0.91144 1.26622 1.05301 0.93299 0.92075 1.69774 1.40415 1.12634 1.21591 0.85341 0.76592 0.78934 0.79909 1.18215 1.18852 1.18867 1.19427 0.88783 0.91123 1.12425 1.19472 0.96248 0.92838 0.95333 1.21775 0.93947 0.96850 0.96970 1.22383 1.01611 0.93380 1.01218 1.23285 0.93705 1.00670 0.89890 1.67626 1.08836 1.18074 1.25692 1.20108 0.95621 0.89614 0.94026 1.18379 0.95384 0.94550 0.94921 1.21064 0.99013 0.95067 0.96330 1.21158 0.95708 1.00269 0.97652 1.21459 0.98402 0.93038 1.00091 1.21341 0.98708 0.97879 0.96127 1.21243 0.94705 0.98157 0.97866 1.67042 1.09130 1.29780 1.09948 0.91602 0.90636 0.92721 0.85789 0.86949 0.89753 0.85866 0.81469 0.79030 0.89547 0.85424 0.82916 0.82862 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 10.15 71.24 0.72 -1.59 16 2 C 0.00 -0.20 6.79 42.74 0.29 0.09 16 3 C -0.15 -6.57 9.64 22.11 0.21 -6.35 16 4 C -0.14 -7.16 8.71 22.66 0.20 -6.96 16 5 C 0.06 3.10 5.29 -21.01 -0.11 2.99 16 6 C -0.46 -23.56 7.35 23.35 0.17 -23.39 16 7 H 0.07 3.62 6.99 -2.91 -0.02 3.60 16 8 C 0.04 2.05 5.25 85.30 0.45 2.50 16 9 N -0.82 -40.08 11.01 21.85 0.24 -39.84 16 10 Si 0.97 36.51 29.58 68.60 2.03 38.54 16 11 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 12 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 13 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 14 C 0.02 1.02 3.88 42.41 0.16 1.18 16 15 C -0.04 -1.65 4.90 -19.77 -0.10 -1.75 16 16 C -0.07 -2.82 8.40 22.72 0.19 -2.63 16 17 C -0.17 -5.28 10.09 22.36 0.23 -5.05 16 18 C 0.08 2.59 11.17 84.78 0.95 3.53 16 19 N -0.49 -18.86 10.14 -183.83 -1.86 -20.72 16 20 C 0.14 6.10 6.41 42.26 0.27 6.37 16 21 C -0.03 -1.29 4.95 -20.06 -0.10 -1.39 16 22 C -0.10 -3.95 7.67 22.51 0.17 -3.77 16 23 C -0.13 -4.38 10.03 22.24 0.22 -4.15 16 24 C -0.11 -3.08 10.04 22.32 0.22 -2.85 16 25 C -0.12 -3.43 10.03 22.23 0.22 -3.20 16 26 C -0.10 -3.50 9.65 22.51 0.22 -3.28 16 27 N -0.45 -21.55 8.56 -171.22 -1.47 -23.02 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.11 5.80 6.45 -2.91 -0.02 5.78 16 33 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 34 H 0.12 5.29 7.72 -2.91 -0.02 5.27 16 35 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.09 4.14 6.48 -2.91 -0.02 4.12 16 38 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.12 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -62.53 347.70 4.58 -57.94 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 1.05 Total: 36.80 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 4.59 Total: -49.71 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -3.09 Total: -83.58 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Total: -62.53 4.58 -57.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239878350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.846 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds