Wall clock time and date at job start Tue Mar 31 2020 10:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31222 * 119.79996 * 2 1 4 4 C 1.33097 * 121.72246 * 180.02562 * 3 2 1 5 5 C 1.47735 * 119.46214 * 180.02562 * 4 3 2 6 6 C 1.39943 * 120.61392 * 129.84320 * 5 4 3 7 7 C 1.38330 * 118.37786 * 180.02562 * 6 5 4 8 8 C 1.38526 * 119.52843 * 0.02562 * 7 6 5 9 9 N 1.31730 * 121.23035 * 0.02562 * 8 7 6 10 10 C 1.32586 * 121.76351 * 359.69215 * 9 8 7 11 11 C 1.48110 * 119.83956 * 180.31614 * 10 9 8 12 12 C 1.39492 * 120.13326 * 136.64762 * 11 10 9 13 13 C 1.37980 * 119.85957 * 179.79052 * 12 11 10 14 14 C 1.38353 * 120.13752 * 0.47111 * 13 12 11 15 15 C 1.38355 * 120.27170 * 359.78591 * 14 13 12 16 16 C 1.37976 * 120.13364 * 359.97438 * 15 14 13 17 17 C 1.40003 * 121.07952 * 359.97438 * 4 3 2 18 18 C 1.36549 * 119.46610 * 359.97438 * 17 4 3 19 19 C 1.40983 * 119.79147 * 180.02562 * 2 1 3 20 20 C 1.40992 * 120.55119 * 0.26645 * 19 2 1 21 21 H 1.08000 * 120.00214 * 329.81199 * 20 19 2 22 22 C 1.40038 * 119.99950 * 149.80152 * 20 19 2 23 23 N 1.30788 * 119.99900 * 162.47476 * 22 20 19 24 24 Si 1.86800 * 119.99932 * 342.47414 * 22 20 19 25 25 H 1.48500 * 109.46807 * 95.15261 * 24 22 20 26 26 H 1.48500 * 109.46948 * 215.14894 * 24 22 20 27 27 H 1.48496 * 109.47116 * 335.15114 * 24 22 20 28 28 H 1.09006 * 109.47015 * 270.13543 * 1 2 3 29 29 H 1.09000 * 109.47053 * 30.13248 * 1 2 3 30 30 H 1.09000 * 109.47169 * 150.13740 * 1 2 3 31 31 H 1.08004 * 120.81389 * 359.97438 * 6 5 4 32 32 H 1.08007 * 120.24253 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.38902 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.06800 * 0.03331 * 12 11 10 35 35 H 1.08000 * 119.93332 * 180.25857 * 13 12 11 36 36 H 1.07993 * 119.86754 * 179.76576 * 14 13 12 37 37 H 1.07993 * 119.93351 * 179.97438 * 15 14 13 38 38 H 1.07998 * 120.07235 * 180.02562 * 16 15 14 39 39 H 1.08003 * 120.26347 * 179.97438 * 17 4 3 40 40 H 1.07998 * 120.79379 * 179.97438 * 18 17 4 41 41 H 0.96997 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1387 0.0000 4 6 3.4894 1.1833 -0.0005 5 6 4.1725 2.4933 0.0001 6 6 5.1865 2.7678 0.9246 7 6 5.7946 4.0097 0.8841 8 6 5.3878 4.9386 -0.0596 9 7 4.4305 4.6624 -0.9214 10 6 3.8178 3.4866 -0.9309 11 6 2.7516 3.2192 -1.9235 12 6 2.7086 1.9960 -2.5927 13 6 1.7102 1.7513 -3.5131 14 6 0.7589 2.7197 -3.7800 15 6 0.7993 3.9368 -3.1235 16 6 1.7898 4.1916 -2.1973 17 6 4.2519 0.0092 -0.0005 18 6 3.6207 -1.2016 0.0005 19 6 2.2075 -1.2235 -0.0005 20 6 1.5099 -2.4487 -0.0067 21 1 0.5382 -2.5193 0.4594 22 6 2.0767 -3.5741 -0.6176 23 7 1.6198 -4.7680 -0.3411 24 14 3.4855 -3.3702 -1.8272 25 1 4.7774 -3.5483 -1.1170 26 1 3.3667 -4.3884 -2.9016 27 1 3.4322 -2.0117 -2.4246 28 1 -0.3633 0.0024 1.0277 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8912 -0.5117 31 1 5.4866 2.0285 1.6525 32 1 6.5809 4.2534 1.5833 33 1 5.8638 5.9075 -0.0890 34 1 3.4529 1.2407 -2.3878 35 1 1.6734 0.8031 -4.0288 36 1 -0.0184 2.5249 -4.5041 37 1 0.0542 4.6890 -3.3363 38 1 1.8202 5.1419 -1.6851 39 1 5.3307 0.0608 -0.0014 40 1 4.1878 -2.1208 0.0001 41 1 2.0122 -5.5475 -0.7645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239879075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:12 Heat of formation + Delta-G solvation = 79.938589 kcal Electronic energy + Delta-G solvation = -25641.325431 eV Core-core repulsion = 22257.066595 eV Total energy + Delta-G solvation = -3384.258836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.19125 -38.60754 -38.19344 -34.40466 -32.96272 -32.62618 -31.70175 -30.68092 -30.44522 -28.96864 -27.24608 -25.45738 -23.68830 -23.02353 -21.95362 -21.49749 -20.82784 -20.29459 -17.70142 -17.21354 -16.39879 -15.91558 -15.77638 -15.29538 -15.04897 -14.53848 -14.33626 -13.67110 -13.58707 -13.37573 -13.31265 -13.00767 -12.90021 -12.74169 -12.61246 -12.17552 -12.08458 -11.86223 -11.53223 -11.41356 -11.20110 -10.91834 -10.83660 -10.66386 -10.39643 -10.03225 -9.69671 -9.57698 -9.26730 -9.07145 -8.64561 -8.39791 -8.28311 -7.96765 -7.49134 -7.25615 -4.73075 1.03790 1.43813 1.87866 2.03741 2.30640 2.58327 2.91012 3.02459 3.11248 3.73186 3.96936 4.26168 4.38066 4.50352 5.01284 5.05199 5.18585 5.20735 5.33444 5.37805 5.41394 5.50263 5.66956 5.76890 5.85806 5.94860 5.98661 6.01490 6.16501 6.27915 6.31921 6.39769 6.46909 6.54512 6.55119 6.64010 6.70485 6.78133 6.79570 6.91970 6.96571 7.05557 7.14610 7.32063 7.40462 7.46370 7.63838 8.01624 8.24553 8.27970 8.44168 9.32903 9.73002 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.005452 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.411977 B = 5134.055372 C = 6207.914880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.037 3.963 3 N -0.424 5.424 4 C -0.006 4.006 5 C -0.016 4.016 6 C -0.081 4.081 7 C -0.172 4.172 8 C 0.078 3.922 9 N -0.477 5.477 10 C 0.168 3.832 11 C -0.014 4.014 12 C -0.070 4.070 13 C -0.121 4.121 14 C -0.117 4.117 15 C -0.131 4.131 16 C -0.088 4.088 17 C -0.101 4.101 18 C -0.215 4.215 19 C 0.052 3.948 20 C -0.413 4.413 21 H 0.101 0.899 22 C 0.083 3.917 23 N -0.786 5.786 24 Si 0.911 3.089 25 H -0.268 1.268 26 H -0.286 1.286 27 H -0.243 1.243 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 10.124 -2.717 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 N -0.132 5.132 4 C -0.139 4.139 5 C -0.019 4.019 6 C -0.107 4.107 7 C -0.192 4.192 8 C -0.080 4.080 9 N -0.185 5.185 10 C 0.031 3.969 11 C -0.015 4.015 12 C -0.089 4.089 13 C -0.139 4.139 14 C -0.135 4.135 15 C -0.149 4.149 16 C -0.107 4.107 17 C -0.121 4.121 18 C -0.239 4.239 19 C 0.047 3.953 20 C -0.441 4.441 21 H 0.119 0.881 22 C -0.140 4.140 23 N -0.408 5.408 24 Si 0.736 3.264 25 H -0.194 1.194 26 H -0.213 1.213 27 H -0.166 1.166 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.091 11.252 -3.317 12.131 hybrid contribution 1.534 -1.747 0.416 2.361 sum 4.625 9.505 -2.901 10.962 Atomic orbital electron populations 1.20304 0.90540 1.01643 1.00743 1.21004 0.95322 0.87339 1.07469 1.66968 1.07903 1.30157 1.08186 1.18375 0.89305 0.89667 1.16583 1.19534 0.94605 0.93612 0.94175 1.21658 0.95110 0.96635 0.97301 1.22000 1.01711 0.94774 1.00744 1.22565 0.94307 0.99263 0.91905 1.67597 1.07856 1.19708 1.23323 1.19939 0.94420 0.88744 0.93801 1.18160 0.94047 0.94203 0.95045 1.21151 0.98232 0.95229 0.94331 1.20962 0.95235 0.98988 0.98694 1.21086 0.98629 0.93884 0.99887 1.20918 0.98820 0.97317 0.97845 1.21035 0.94059 0.98201 0.97379 1.21133 0.98460 0.92981 0.99557 1.20975 0.94752 0.96462 1.11711 1.18505 0.91812 0.94267 0.90717 1.19566 1.04975 0.90934 1.28611 0.88110 1.26299 0.97061 0.94189 0.96413 1.69654 1.37573 0.99459 1.34116 0.86294 0.80101 0.80166 0.79796 1.19374 1.21268 1.16593 0.93066 0.92822 0.91068 0.84974 0.85251 0.83260 0.86352 0.86427 0.86638 0.86533 0.86397 0.88033 0.87319 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.60 36.01 0.35 -1.14 16 2 C 0.04 0.83 6.86 -81.81 -0.56 0.27 16 3 N -0.42 -9.42 8.15 -5.42 -0.04 -9.46 16 4 C -0.01 -0.13 3.96 -82.78 -0.33 -0.46 16 5 C -0.02 -0.31 5.56 -104.46 -0.58 -0.89 16 6 C -0.08 -1.27 9.65 -38.91 -0.38 -1.64 16 7 C -0.17 -2.27 10.09 -39.44 -0.40 -2.67 16 8 C 0.08 1.09 11.17 -17.49 -0.20 0.89 16 9 N -0.48 -8.18 10.14 -9.47 -0.10 -8.27 16 10 C 0.17 3.14 6.41 -82.57 -0.53 2.61 16 11 C -0.01 -0.26 4.85 -104.91 -0.51 -0.76 16 12 C -0.07 -1.33 7.51 -39.21 -0.29 -1.63 16 13 C -0.12 -2.05 10.03 -39.63 -0.40 -2.45 16 14 C -0.12 -1.75 10.04 -39.50 -0.40 -2.14 16 15 C -0.13 -1.94 10.03 -39.63 -0.40 -2.34 16 16 C -0.09 -1.48 9.65 -39.21 -0.38 -1.86 16 17 C -0.10 -2.09 9.42 -39.53 -0.37 -2.46 16 18 C -0.21 -4.81 7.19 -39.01 -0.28 -5.09 16 19 C 0.05 1.23 5.11 -106.63 -0.55 0.69 16 20 C -0.41 -10.06 8.54 -37.86 -0.32 -10.38 16 21 H 0.10 2.54 7.22 -52.49 -0.38 2.16 16 22 C 0.08 1.96 5.42 -17.32 -0.09 1.87 16 23 N -0.79 -19.02 13.93 55.55 0.77 -18.24 16 24 Si 0.91 19.11 24.51 -169.99 -4.17 14.94 16 25 H -0.27 -5.47 6.70 56.52 0.38 -5.09 16 26 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.24 -5.26 6.84 56.52 0.39 -4.87 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.40 6.83 -51.93 -0.35 1.04 16 31 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 32 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.12 2.42 6.63 -52.49 -0.35 2.07 16 35 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.10 1.84 8.04 -52.48 -0.42 1.42 16 40 H 0.11 2.40 4.79 -52.49 -0.25 2.14 16 41 H 0.29 6.35 8.30 -40.82 -0.34 6.02 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -26.87 342.95 -9.71 -36.58 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.73 Total: 8.88 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -6.61 Total: -29.60 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.63 Total: -35.98 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.17 Total: 14.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.87 -9.71 -36.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239879075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.520 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds