Wall clock time and date at job start Tue Mar 31 2020 10:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31222 * 119.79996 * 2 1 4 4 C 1.33097 * 121.72246 * 180.02562 * 3 2 1 5 5 C 1.47735 * 119.46214 * 180.02562 * 4 3 2 6 6 C 1.39943 * 120.61392 * 129.84320 * 5 4 3 7 7 C 1.38330 * 118.37786 * 180.02562 * 6 5 4 8 8 C 1.38526 * 119.52843 * 0.02562 * 7 6 5 9 9 N 1.31730 * 121.23035 * 0.02562 * 8 7 6 10 10 C 1.32586 * 121.76351 * 359.69215 * 9 8 7 11 11 C 1.48110 * 119.83956 * 180.31614 * 10 9 8 12 12 C 1.39492 * 120.13326 * 136.64762 * 11 10 9 13 13 C 1.37980 * 119.85957 * 179.79052 * 12 11 10 14 14 C 1.38353 * 120.13752 * 0.47111 * 13 12 11 15 15 C 1.38355 * 120.27170 * 359.78591 * 14 13 12 16 16 C 1.37976 * 120.13364 * 359.97438 * 15 14 13 17 17 C 1.40003 * 121.07952 * 359.97438 * 4 3 2 18 18 C 1.36549 * 119.46610 * 359.97438 * 17 4 3 19 19 C 1.40983 * 119.79147 * 180.02562 * 2 1 3 20 20 C 1.40992 * 120.55119 * 0.26645 * 19 2 1 21 21 H 1.08000 * 120.00214 * 329.81199 * 20 19 2 22 22 C 1.40038 * 119.99950 * 149.80152 * 20 19 2 23 23 N 1.30788 * 119.99900 * 162.47476 * 22 20 19 24 24 Si 1.86800 * 119.99932 * 342.47414 * 22 20 19 25 25 H 1.48500 * 109.46807 * 95.15261 * 24 22 20 26 26 H 1.48500 * 109.46948 * 215.14894 * 24 22 20 27 27 H 1.48496 * 109.47116 * 335.15114 * 24 22 20 28 28 H 1.09006 * 109.47015 * 270.13543 * 1 2 3 29 29 H 1.09000 * 109.47053 * 30.13248 * 1 2 3 30 30 H 1.09000 * 109.47169 * 150.13740 * 1 2 3 31 31 H 1.08004 * 120.81389 * 359.97438 * 6 5 4 32 32 H 1.08007 * 120.24253 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.38902 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.06800 * 0.03331 * 12 11 10 35 35 H 1.08000 * 119.93332 * 180.25857 * 13 12 11 36 36 H 1.07993 * 119.86754 * 179.76576 * 14 13 12 37 37 H 1.07993 * 119.93351 * 179.97438 * 15 14 13 38 38 H 1.07998 * 120.07235 * 180.02562 * 16 15 14 39 39 H 1.08003 * 120.26347 * 179.97438 * 17 4 3 40 40 H 1.07998 * 120.79379 * 179.97438 * 18 17 4 41 41 H 0.96997 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1387 0.0000 4 6 3.4894 1.1833 -0.0005 5 6 4.1725 2.4933 0.0001 6 6 5.1865 2.7678 0.9246 7 6 5.7946 4.0097 0.8841 8 6 5.3878 4.9386 -0.0596 9 7 4.4305 4.6624 -0.9214 10 6 3.8178 3.4866 -0.9309 11 6 2.7516 3.2192 -1.9235 12 6 2.7086 1.9960 -2.5927 13 6 1.7102 1.7513 -3.5131 14 6 0.7589 2.7197 -3.7800 15 6 0.7993 3.9368 -3.1235 16 6 1.7898 4.1916 -2.1973 17 6 4.2519 0.0092 -0.0005 18 6 3.6207 -1.2016 0.0005 19 6 2.2075 -1.2235 -0.0005 20 6 1.5099 -2.4487 -0.0067 21 1 0.5382 -2.5193 0.4594 22 6 2.0767 -3.5741 -0.6176 23 7 1.6198 -4.7680 -0.3411 24 14 3.4855 -3.3702 -1.8272 25 1 4.7774 -3.5483 -1.1170 26 1 3.3667 -4.3884 -2.9016 27 1 3.4322 -2.0117 -2.4246 28 1 -0.3633 0.0024 1.0277 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8912 -0.5117 31 1 5.4866 2.0285 1.6525 32 1 6.5809 4.2534 1.5833 33 1 5.8638 5.9075 -0.0890 34 1 3.4529 1.2407 -2.3878 35 1 1.6734 0.8031 -4.0288 36 1 -0.0184 2.5249 -4.5041 37 1 0.0542 4.6890 -3.3363 38 1 1.8202 5.1419 -1.6851 39 1 5.3307 0.0608 -0.0014 40 1 4.1878 -2.1208 0.0001 41 1 2.0122 -5.5475 -0.7645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239879075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:11 Heat of formation + Delta-G solvation = 67.288719 kcal Electronic energy + Delta-G solvation = -25641.873970 eV Core-core repulsion = 22257.066595 eV Total energy + Delta-G solvation = -3384.807375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54320 -40.21194 -39.44237 -36.10278 -34.50245 -33.87092 -33.37463 -32.17848 -31.72696 -30.24270 -28.94225 -27.00939 -24.93419 -24.53728 -23.40634 -22.96055 -22.09374 -21.91489 -19.46569 -18.47966 -17.87763 -17.27307 -17.12693 -16.77154 -16.65751 -15.78544 -15.63938 -15.35635 -15.02224 -14.89330 -14.69676 -14.54933 -14.23857 -14.07645 -13.94127 -13.73175 -13.51627 -13.44348 -13.05278 -12.92707 -12.82193 -12.61488 -12.20098 -11.96448 -11.93806 -11.76286 -11.40912 -10.85596 -10.53744 -10.37562 -10.28972 -9.93921 -9.73320 -9.48122 -9.03922 -8.96757 -6.54386 -0.24121 0.14707 0.55817 0.67893 0.80097 0.86114 1.20549 1.33336 1.41582 2.02427 2.51178 2.78278 3.06460 3.28001 3.42705 3.59555 3.95301 4.00035 4.09414 4.14459 4.14690 4.24621 4.28550 4.30506 4.51157 4.56357 4.58601 4.72389 4.74196 4.74760 4.90854 4.96315 5.00293 5.05572 5.11144 5.15232 5.21822 5.31383 5.45247 5.55069 5.60086 5.65044 5.70761 5.73095 5.82435 5.91748 6.15313 6.20153 6.51030 6.64968 7.03696 7.60644 8.02756 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.005452 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.411977 B = 5134.055372 C = 6207.914880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.023 3.977 3 N -0.436 5.436 4 C 0.017 3.983 5 C -0.056 4.056 6 C -0.081 4.081 7 C -0.157 4.157 8 C 0.085 3.915 9 N -0.495 5.495 10 C 0.153 3.847 11 C -0.032 4.032 12 C -0.093 4.093 13 C -0.134 4.134 14 C -0.113 4.113 15 C -0.123 4.123 16 C -0.099 4.099 17 C -0.110 4.110 18 C -0.220 4.220 19 C 0.037 3.963 20 C -0.444 4.444 21 H 0.077 0.923 22 C 0.057 3.943 23 N -0.824 5.824 24 Si 0.954 3.046 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.259 1.259 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.175 0.825 33 H 0.191 0.809 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 13.229 -2.836 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 N -0.144 5.144 4 C -0.117 4.117 5 C -0.059 4.059 6 C -0.107 4.107 7 C -0.176 4.176 8 C -0.074 4.074 9 N -0.204 5.204 10 C 0.017 3.983 11 C -0.033 4.033 12 C -0.112 4.112 13 C -0.152 4.152 14 C -0.131 4.131 15 C -0.141 4.141 16 C -0.118 4.118 17 C -0.130 4.130 18 C -0.245 4.245 19 C 0.032 3.968 20 C -0.473 4.473 21 H 0.095 0.905 22 C -0.161 4.161 23 N -0.448 5.448 24 Si 0.778 3.222 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.183 1.183 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.164 0.836 32 H 0.193 0.807 33 H 0.208 0.792 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.128 0.872 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.687 14.338 -3.435 15.471 hybrid contribution 1.172 -2.301 0.496 2.629 sum 5.859 12.037 -2.938 13.706 Atomic orbital electron populations 1.20254 0.89262 1.01723 1.01231 1.21365 0.96505 0.87312 1.07094 1.67081 1.08766 1.29789 1.08806 1.18892 0.89049 0.91111 1.12657 1.19591 0.96738 0.92975 0.96629 1.21930 0.93939 0.98221 0.96624 1.22446 1.01549 0.93020 1.00571 1.23378 0.92677 1.00901 0.90425 1.67656 1.09026 1.19027 1.24667 1.19992 0.94904 0.89323 0.94098 1.18364 0.94977 0.94453 0.95491 1.21020 0.98800 0.95250 0.96140 1.21153 0.95561 0.99899 0.98622 1.21435 0.98431 0.93259 1.00005 1.21330 0.98542 0.97874 0.96327 1.21246 0.94287 0.98164 0.98091 1.21418 0.99967 0.92330 0.99295 1.21127 0.94502 0.97331 1.11495 1.18635 0.92520 0.94333 0.91337 1.19434 1.04718 0.92087 1.31069 0.90472 1.26747 0.98525 0.93795 0.97067 1.69664 1.39322 1.00026 1.35775 0.85646 0.78670 0.79300 0.78627 1.18215 1.19946 1.18333 0.92327 0.91983 0.91540 0.83631 0.80734 0.79216 0.89041 0.86188 0.83454 0.83018 0.85708 0.85309 0.87151 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.75 9.60 71.24 0.68 -2.07 16 2 C 0.02 1.08 6.86 43.32 0.30 1.38 16 3 N -0.44 -19.60 8.15 -171.05 -1.39 -20.99 16 4 C 0.02 0.73 3.96 41.89 0.17 0.89 16 5 C -0.06 -2.06 5.56 -19.76 -0.11 -2.17 16 6 C -0.08 -2.30 9.65 22.71 0.22 -2.09 16 7 C -0.16 -3.39 10.09 22.36 0.23 -3.17 16 8 C 0.08 2.01 11.17 84.78 0.95 2.95 16 9 N -0.50 -15.81 10.14 -183.87 -1.86 -17.67 16 10 C 0.15 5.55 6.41 42.25 0.27 5.82 16 11 C -0.03 -1.18 4.85 -20.05 -0.10 -1.28 16 12 C -0.09 -3.59 7.51 22.51 0.17 -3.42 16 13 C -0.13 -4.57 10.03 22.24 0.22 -4.35 16 14 C -0.11 -3.18 10.04 22.33 0.22 -2.96 16 15 C -0.12 -3.35 10.03 22.24 0.22 -3.13 16 16 C -0.10 -3.20 9.65 22.51 0.22 -2.98 16 17 C -0.11 -4.54 9.42 22.30 0.21 -4.33 16 18 C -0.22 -10.01 7.19 22.64 0.16 -9.84 16 19 C 0.04 1.79 5.11 -21.17 -0.11 1.68 16 20 C -0.44 -22.82 8.54 23.38 0.20 -22.62 16 21 H 0.08 4.18 7.22 -2.91 -0.02 4.16 16 22 C 0.06 2.82 5.42 85.28 0.46 3.28 16 23 N -0.82 -41.47 13.93 21.84 0.30 -41.17 16 24 Si 0.95 40.16 24.51 68.60 1.68 41.84 16 25 H -0.26 -10.24 6.70 99.48 0.67 -9.57 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 27 H -0.26 -11.48 6.84 99.48 0.68 -10.80 16 28 H 0.06 2.26 8.14 -2.38 -0.02 2.25 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 2.75 6.83 -2.39 -0.02 2.73 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.09 3.92 6.63 -2.91 -0.02 3.90 16 35 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 38 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.13 4.50 8.04 -2.91 -0.02 4.48 16 40 H 0.11 4.91 4.79 -2.91 -0.01 4.90 16 41 H 0.30 13.48 8.30 -92.71 -0.77 12.71 16 Total: -1.00 -61.24 342.95 4.30 -56.94 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.99 Total: 29.45 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 4.58 Total: -48.40 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.95 Total: -79.83 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.68 Total: 41.84 kcal Total: -61.24 4.30 -56.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239879075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.229 kcal (2) G-P(sol) polarization free energy of solvation -61.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds