Wall clock time and date at job start Tue Mar 31 2020 11:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46887 * 2 1 4 4 C 1.52997 * 109.46999 * 120.00403 * 2 1 3 5 5 O 1.42898 * 109.47554 * 64.99880 * 4 2 1 6 6 C 1.35904 * 117.00061 * 179.97438 * 5 4 2 7 7 C 1.38870 * 119.96556 * 0.02562 * 6 5 4 8 8 C 1.38515 * 120.22761 * 179.97438 * 7 6 5 9 9 F 1.35095 * 119.91580 * 180.02562 * 8 7 6 10 10 C 1.38197 * 120.16026 * 359.73978 * 8 7 6 11 11 C 1.39658 * 119.92881 * 0.51275 * 10 8 7 12 12 C 1.47809 * 120.11486 * 179.76512 * 11 10 8 13 13 N 1.32860 * 120.24813 * 45.75566 * 12 11 10 14 14 C 1.32003 * 120.07924 * 180.28411 * 13 12 11 15 15 C 1.39197 * 120.58827 * 359.69768 * 14 13 12 16 16 N 1.31601 * 120.50105 * 0.02562 * 15 14 13 17 17 C 1.33977 * 119.90041 * 359.97438 * 16 15 14 18 18 C 1.40802 * 120.28187 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99665 * 175.63403 * 18 17 16 20 20 C 1.40169 * 120.00457 * 355.63451 * 18 17 16 21 21 N 1.30680 * 119.99812 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99818 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47348 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47026 * 120.00037 * 22 20 18 25 25 H 1.48500 * 109.46835 * 239.99558 * 22 20 18 26 26 C 1.38409 * 119.96386 * 179.97438 * 6 5 4 27 27 H 1.08992 * 109.47360 * 59.99899 * 1 2 3 28 28 H 1.09006 * 109.46688 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46918 * 299.99783 * 1 2 3 30 30 H 1.09004 * 109.46918 * 240.00217 * 2 1 3 31 31 H 1.09006 * 109.46726 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47204 * 300.00197 * 3 2 1 33 33 H 1.09004 * 109.47165 * 60.00368 * 3 2 1 34 34 H 1.08997 * 109.47330 * 304.99844 * 4 2 1 35 35 H 1.09000 * 109.47060 * 184.99901 * 4 2 1 36 36 H 1.08000 * 119.89058 * 359.95605 * 7 6 5 37 37 H 1.08001 * 120.03255 * 180.25828 * 10 8 7 38 38 H 1.07998 * 119.70135 * 179.72548 * 14 13 12 39 39 H 1.07998 * 119.74739 * 179.97438 * 15 14 13 40 40 H 0.97007 * 120.00208 * 180.02562 * 21 20 18 41 41 H 1.08004 * 120.08664 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0406 -2.8858 2.2328 7 6 2.7614 -2.3418 3.2879 8 6 3.1496 -3.1394 4.3517 9 9 3.8502 -2.6036 5.3750 10 6 2.8170 -4.4806 4.3716 11 6 2.0968 -5.0357 3.3115 12 6 1.7433 -6.4708 3.3261 13 7 1.2453 -7.0263 4.4255 14 6 0.9360 -8.3095 4.4366 15 6 1.1206 -9.0925 3.3006 16 7 1.6072 -8.5648 2.1976 17 6 1.9279 -7.2644 2.1643 18 6 2.4486 -6.6914 0.9882 19 1 2.6394 -5.6293 0.9437 20 6 2.7194 -7.4994 -0.1247 21 7 2.4891 -8.7846 -0.0707 22 14 3.4096 -6.7389 -1.6851 23 1 3.5782 -5.2765 -1.4904 24 1 4.7259 -7.3526 -1.9945 25 1 2.4727 -6.9832 -2.8110 26 6 1.7065 -4.2289 2.2407 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6055 -0.2619 2.1369 35 1 3.1264 -0.6444 1.2951 36 1 3.0204 -1.2934 3.2788 37 1 3.1171 -5.0997 5.2041 38 1 0.5357 -8.7557 5.3349 39 1 0.8633 -10.1411 3.3249 40 1 2.6768 -9.3438 -0.8407 41 1 1.1456 -4.6521 1.4205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241076982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:50 Heat of formation + Delta-G solvation = -32.035555 kcal Electronic energy + Delta-G solvation = -25767.153501 eV Core-core repulsion = 21947.269878 eV Total energy + Delta-G solvation = -3819.883624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.52260 -39.90140 -39.03906 -37.14957 -35.20270 -34.26581 -32.38767 -31.38651 -29.59453 -28.82313 -27.32035 -26.52668 -26.26537 -23.52807 -22.38598 -21.73418 -20.97500 -20.16978 -17.98803 -17.80526 -16.64600 -16.18091 -16.01473 -15.68271 -15.27363 -15.16744 -14.95560 -14.80860 -14.45609 -14.22085 -14.12547 -13.43562 -13.13400 -12.94158 -12.83701 -12.40993 -12.15950 -12.06348 -11.97045 -11.62822 -11.49825 -11.38965 -11.25599 -11.07705 -11.00876 -10.76975 -10.57045 -10.51086 -10.18446 -9.97817 -9.66798 -9.28168 -8.54013 -7.78933 -7.70108 -7.52622 -6.68883 -4.84102 1.47826 1.78777 2.43737 2.86501 2.95932 3.02313 3.09375 3.31723 3.74472 4.13844 4.50145 4.62709 4.63524 4.68429 4.92801 5.11270 5.24098 5.28796 5.37898 5.42886 5.47892 5.53908 5.58465 5.67459 5.75234 5.76508 5.87615 5.89014 5.92270 6.09617 6.19381 6.21222 6.35617 6.47077 6.54448 6.60985 6.77346 6.87430 6.90067 7.11090 7.28044 7.53182 7.71784 7.91991 8.22678 8.49522 9.08482 9.67634 9.93654 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.004925 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.943873 B = 5683.713062 C = 7481.444506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.062 3.938 5 O -0.307 6.307 6 C 0.152 3.848 7 C -0.266 4.266 8 C 0.128 3.872 9 F -0.146 7.146 10 C -0.176 4.176 11 C 0.098 3.902 12 C -0.044 4.044 13 N -0.405 5.405 14 C -0.117 4.117 15 C 0.093 3.907 16 N -0.450 5.450 17 C 0.221 3.779 18 C -0.399 4.399 19 H 0.106 0.894 20 C 0.064 3.936 21 N -0.698 5.698 22 Si 0.908 3.092 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.268 1.268 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.280 0.720 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 12.921 -1.696 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.013 4.013 5 O -0.221 6.221 6 C 0.107 3.893 7 C -0.285 4.285 8 C 0.109 3.891 9 F -0.125 7.125 10 C -0.196 4.196 11 C 0.097 3.903 12 C -0.190 4.190 13 N -0.117 5.117 14 C -0.279 4.279 15 C -0.079 4.079 16 N -0.167 5.167 17 C 0.097 3.903 18 C -0.428 4.428 19 H 0.124 0.876 20 C -0.164 4.164 21 N -0.317 5.317 22 Si 0.731 3.269 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.193 1.193 26 C -0.168 4.168 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.091 0.909 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.197 12.680 -2.009 12.840 hybrid contribution 0.584 0.287 -0.182 0.676 sum 0.387 12.966 -2.192 13.156 Atomic orbital electron populations 1.21823 0.94339 1.02852 1.01441 1.21127 0.97023 0.95618 0.97677 1.21778 1.01177 0.94987 1.02305 1.22869 0.99471 0.80116 0.98880 1.86081 1.74274 1.20396 1.41371 1.18436 0.94068 0.90442 0.86341 1.20915 1.10071 1.00691 0.96870 1.17194 0.94889 0.91731 0.85318 1.91442 1.76715 1.86649 1.57691 1.21120 1.04080 0.92983 1.01456 1.17820 0.90944 0.90945 0.90632 1.19887 1.13760 0.92695 0.92660 1.67658 1.05516 1.11926 1.26583 1.22573 1.14515 0.91092 0.99766 1.23591 0.93848 0.99724 0.90764 1.69577 1.12606 1.10902 1.23567 1.19183 0.90640 0.88451 0.92026 1.20150 1.31244 0.96920 0.94522 0.87584 1.26260 0.94542 0.94689 1.00950 1.70067 1.26956 1.04986 1.29734 0.86211 0.79286 0.81195 0.80224 1.17516 1.19418 1.19310 1.20707 1.05092 0.89650 1.01335 0.92677 0.91508 0.92813 0.89950 0.92398 0.91858 0.92421 0.92141 0.92132 0.85261 0.85034 0.85217 0.85005 0.90863 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.09 37.16 0.34 -1.12 16 2 C -0.10 -0.96 3.16 -90.62 -0.29 -1.24 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 4 C 0.06 0.74 4.12 37.16 0.15 0.89 16 5 O -0.31 -4.89 9.67 -19.44 -0.19 -5.08 16 6 C 0.15 2.70 6.68 -39.28 -0.26 2.44 16 7 C -0.27 -4.41 9.01 -39.25 -0.35 -4.76 16 8 C 0.13 2.32 7.29 -39.49 -0.29 2.03 16 9 F -0.15 -2.53 17.26 2.25 0.04 -2.49 16 10 C -0.18 -3.55 9.67 -39.07 -0.38 -3.93 16 11 C 0.10 2.15 5.30 -104.93 -0.56 1.60 16 12 C -0.04 -1.09 6.39 -82.10 -0.53 -1.62 16 13 N -0.40 -9.79 10.32 -8.97 -0.09 -9.88 16 14 C -0.12 -2.61 11.22 -17.12 -0.19 -2.81 16 15 C 0.09 2.14 11.22 -17.29 -0.19 1.94 16 16 N -0.45 -11.80 8.05 -10.73 -0.09 -11.88 16 17 C 0.22 5.76 6.53 -84.56 -0.55 5.20 16 18 C -0.40 -9.91 7.93 -37.89 -0.30 -10.22 16 19 H 0.11 2.49 4.76 -52.49 -0.25 2.24 16 20 C 0.06 1.51 5.50 -17.32 -0.10 1.42 16 21 N -0.70 -17.26 11.49 55.56 0.64 -16.62 16 22 Si 0.91 17.46 29.56 -169.99 -5.03 12.44 16 23 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 26 C -0.15 -3.00 7.44 -38.99 -0.29 -3.29 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 36 H 0.13 1.79 6.28 -52.49 -0.33 1.46 16 37 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 40 H 0.28 6.19 8.29 -40.82 -0.34 5.86 16 41 H 0.15 3.04 6.75 -52.48 -0.35 2.69 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -28.16 349.65 -7.96 -36.12 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.07 Total: 6.35 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -3.44 Total: -14.22 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.46 Total: -38.38 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.19 Total: -5.08 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.16 -7.96 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241076982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds