Wall clock time and date at job start Tue Mar 31 2020 11:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47388 * 2 1 4 4 C 1.52997 * 109.47419 * 239.99433 * 2 1 3 5 5 O 1.42909 * 109.46667 * 119.99801 * 2 1 3 6 6 C 1.35616 * 117.00331 * 60.00099 * 5 2 1 7 7 N 1.32160 * 119.76524 * 359.97438 * 6 5 2 8 8 C 1.31962 * 121.77723 * 180.02562 * 7 6 5 9 9 C 1.38197 * 121.09696 * 0.02562 * 8 7 6 10 10 C 1.38554 * 119.40985 * 359.76131 * 9 8 7 11 11 C 1.39564 * 118.37303 * 0.48350 * 10 9 8 12 12 C 1.48315 * 120.55888 * 179.77864 * 11 10 9 13 13 C 1.39026 * 120.42570 * 64.71989 * 12 11 10 14 14 C 1.40941 * 118.12971 * 179.97438 * 13 12 11 15 15 C 1.41379 * 120.57537 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00031 * 203.53442 * 15 14 13 17 17 C 1.39899 * 119.99629 * 23.52564 * 15 14 13 18 18 N 1.30857 * 119.99940 * 17.61098 * 17 15 14 19 19 Si 1.86806 * 119.99755 * 197.60839 * 17 15 14 20 20 H 1.48495 * 109.47235 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46912 * 120.00245 * 19 17 15 22 22 H 1.48503 * 109.46964 * 240.00235 * 19 17 15 23 23 C 1.40803 * 118.85807 * 359.97438 * 14 13 12 24 24 N 1.31510 * 120.70138 * 0.27659 * 23 14 13 25 25 C 1.32154 * 122.07810 * 359.43449 * 24 23 14 26 26 F 1.35096 * 119.46399 * 180.31796 * 25 24 23 27 27 H 1.08995 * 109.47406 * 300.00630 * 1 2 3 28 28 H 1.09002 * 109.46857 * 60.00337 * 1 2 3 29 29 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.47359 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47239 * 299.99705 * 3 2 1 32 32 H 1.09001 * 109.47515 * 59.99747 * 3 2 1 33 33 H 1.09002 * 109.47277 * 300.00188 * 4 2 1 34 34 H 1.09002 * 109.46918 * 60.00267 * 4 2 1 35 35 H 1.09000 * 109.47538 * 180.02562 * 4 2 1 36 36 H 1.07996 * 119.45115 * 179.97438 * 8 7 6 37 37 H 1.07993 * 120.29337 * 180.02562 * 9 8 7 38 38 H 1.08000 * 120.81344 * 180.25629 * 10 9 8 39 39 H 1.08009 * 120.93552 * 359.95252 * 13 12 11 40 40 H 0.97012 * 119.99824 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.65062 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0062 -0.6737 1.1669 6 6 1.6418 -1.9708 1.3209 7 7 0.8789 -2.5505 0.4106 8 6 0.5005 -3.8099 0.5208 9 6 0.8887 -4.5800 1.6007 10 6 1.6926 -4.0210 2.5810 11 6 2.0747 -2.6857 2.4437 12 6 2.9305 -2.0373 3.4668 13 6 4.2334 -2.4753 3.6752 14 6 5.0040 -1.8241 4.6593 15 6 6.3351 -2.2270 4.9136 16 1 6.7887 -2.0188 5.8714 17 6 7.0646 -2.8955 3.9246 18 7 6.6704 -2.8500 2.6776 19 14 8.6013 -3.8529 4.3841 20 1 8.8302 -3.7490 5.8476 21 1 8.4257 -5.2796 4.0111 22 1 9.7695 -3.2919 3.6589 23 6 4.4257 -0.7645 5.3842 24 7 3.1863 -0.3905 5.1529 25 6 2.4367 -0.9745 4.2345 26 9 1.1719 -0.5432 4.0365 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2489 36 1 -0.1237 -4.2457 -0.2452 37 1 0.5717 -5.6095 1.6776 38 1 2.0127 -4.6033 3.4324 39 1 4.6435 -3.2919 3.0993 40 1 7.1764 -3.3132 1.9918 41 1 5.0047 -0.2563 6.1411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241151696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:10 Heat of formation + Delta-G solvation = -19.184234 kcal Electronic energy + Delta-G solvation = -26969.884671 eV Core-core repulsion = 23150.558322 eV Total energy + Delta-G solvation = -3819.326348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -47.47245 -40.54296 -38.38457 -37.92087 -34.19153 -33.91120 -32.97541 -30.94804 -30.30444 -28.46593 -27.11038 -27.10767 -25.51008 -23.79202 -23.14105 -21.80657 -20.84388 -20.17077 -17.68396 -17.13223 -16.61501 -16.48545 -15.91285 -15.54421 -15.15380 -14.94491 -14.60771 -14.32252 -14.25153 -13.94090 -13.58502 -13.27585 -12.61905 -12.45734 -12.30697 -12.23904 -12.12174 -12.06651 -11.82822 -11.77028 -11.72079 -11.71140 -11.40100 -11.29667 -11.19100 -10.71846 -10.54457 -10.38422 -10.19098 -9.52090 -9.44923 -9.11443 -8.46292 -8.40522 -7.89851 -7.49251 -6.99986 -4.60113 1.40734 1.64137 2.37010 2.68683 2.95778 2.99892 3.03267 3.41392 3.75222 4.09502 4.36923 4.52837 5.06433 5.08252 5.12743 5.19836 5.22671 5.28910 5.37616 5.46076 5.50537 5.70386 5.76550 5.87770 5.95077 5.97590 6.08108 6.13313 6.19065 6.26573 6.33711 6.49764 6.54746 6.55419 6.58837 6.78098 6.82491 6.94450 6.97479 7.47481 7.63859 7.76585 7.80631 8.16322 8.24713 8.50153 8.50571 9.25793 9.91354 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.004817 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.605530 B = 5811.256093 C = 6062.589946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.278 6.278 6 C 0.344 3.656 7 N -0.534 5.534 8 C 0.118 3.882 9 C -0.214 4.214 10 C -0.035 4.035 11 C -0.084 4.084 12 C -0.090 4.090 13 C -0.096 4.096 14 C 0.054 3.946 15 C -0.442 4.442 16 H 0.088 0.912 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.272 1.272 23 C 0.011 3.989 24 N -0.491 5.491 25 C 0.179 3.821 26 F -0.145 7.145 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.285 0.715 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 -2.514 -6.955 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.080 3.920 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.185 6.185 6 C 0.165 3.835 7 N -0.258 5.258 8 C -0.038 4.038 9 C -0.235 4.235 10 C -0.060 4.060 11 C -0.088 4.088 12 C -0.094 4.094 13 C -0.121 4.121 14 C 0.050 3.950 15 C -0.471 4.471 16 H 0.106 0.894 17 C -0.146 4.146 18 N -0.408 5.408 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.150 4.150 24 N -0.203 5.203 25 C 0.025 3.975 26 F -0.125 7.125 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.189 -1.203 -7.298 10.314 hybrid contribution 1.046 -1.464 0.033 1.799 sum -6.143 -2.666 -7.265 9.880 Atomic orbital electron populations 1.22541 0.94723 1.04796 1.01615 1.21642 0.94195 0.92055 0.84093 1.21811 1.02274 0.93178 1.02473 1.22548 1.01336 1.03468 0.96386 1.86462 1.69134 1.19360 1.43551 1.19803 0.89476 0.84877 0.89300 1.67447 1.15961 1.13119 1.29278 1.22345 0.96410 0.88566 0.96437 1.21782 1.03275 1.01570 0.96851 1.21508 0.93592 0.92799 0.98101 1.18748 1.01521 0.93759 0.94780 1.18793 0.95183 0.98112 0.97346 1.21676 0.89634 1.00514 1.00291 1.18457 0.94252 0.90624 0.91677 1.19570 0.96280 1.30887 1.00364 0.89403 1.26009 0.99782 0.94704 0.94146 1.69808 1.37859 1.32095 1.00991 0.86162 0.80214 0.79532 0.80385 1.18066 1.19512 1.19746 1.22288 0.89998 0.98158 1.04580 1.66281 1.07782 1.29536 1.16702 1.17476 0.81680 0.98182 1.00203 1.91396 1.36608 1.90091 1.94366 0.92604 0.92127 0.89122 0.91616 0.90879 0.91631 0.89114 0.92105 0.92586 0.83009 0.85042 0.84422 0.84538 0.90367 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.35 37.16 0.31 -2.31 16 2 C 0.12 1.91 1.11 -90.63 -0.10 1.81 16 3 C -0.14 -2.02 8.84 37.15 0.33 -1.69 16 4 C -0.18 -2.66 8.35 37.16 0.31 -2.35 16 5 O -0.28 -5.74 9.01 -18.55 -0.17 -5.90 16 6 C 0.34 6.81 6.60 -16.76 -0.11 6.70 16 7 N -0.53 -8.91 4.58 -13.06 -0.06 -8.97 16 8 C 0.12 1.63 11.17 -17.51 -0.20 1.44 16 9 C -0.21 -2.97 10.09 -39.48 -0.40 -3.37 16 10 C -0.03 -0.59 9.89 -38.97 -0.39 -0.98 16 11 C -0.08 -1.75 5.04 -104.61 -0.53 -2.28 16 12 C -0.09 -2.14 4.98 -104.76 -0.52 -2.66 16 13 C -0.10 -2.36 8.51 -38.27 -0.33 -2.69 16 14 C 0.05 1.37 5.59 -106.71 -0.60 0.77 16 15 C -0.44 -10.69 9.08 -37.77 -0.34 -11.04 16 16 H 0.09 2.00 7.90 -52.48 -0.41 1.59 16 17 C 0.07 1.68 5.17 -17.35 -0.09 1.59 16 18 N -0.78 -18.83 10.92 55.54 0.61 -18.23 16 19 Si 0.91 17.13 29.59 -169.99 -5.03 12.10 16 20 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 C 0.01 0.27 10.96 -16.72 -0.18 0.08 16 24 N -0.49 -12.53 10.33 -12.58 -0.13 -12.66 16 25 C 0.18 4.48 8.13 -16.72 -0.14 4.35 16 26 F -0.14 -3.55 16.70 2.25 0.04 -3.52 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.39 5.58 -51.93 -0.29 1.10 16 30 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.41 5.58 -51.93 -0.29 1.12 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.14 3.42 6.19 -52.48 -0.32 3.09 16 40 H 0.29 6.23 8.30 -40.81 -0.34 5.89 16 41 H 0.14 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -28.42 347.09 -7.58 -36.00 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.10 Total: 8.55 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.96 Total: -12.61 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.42 Total: -39.86 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.17 Total: -5.90 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.42 -7.58 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241151696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.814 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds