Wall clock time and date at job start Tue Mar 31 2020 11:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38092 * 120.80215 * 2 1 4 4 C 1.39197 * 119.23146 * 179.97438 * 3 2 1 5 5 N 1.38962 * 119.56738 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00212 * 5.00502 * 5 4 3 7 7 C 1.46503 * 120.00202 * 184.99957 * 5 4 3 8 8 N 1.32461 * 120.86489 * 359.72509 * 4 3 2 9 9 C 1.31793 * 121.75052 * 0.56026 * 8 4 3 10 10 C 1.39254 * 120.67718 * 359.44109 * 9 8 4 11 11 C 1.48269 * 120.46203 * 180.25197 * 10 9 8 12 12 C 1.39305 * 120.13470 * 64.99710 * 11 10 9 13 13 C 1.37980 * 119.96811 * 179.97438 * 12 11 10 14 14 C 1.38672 * 120.24288 * 359.97438 * 13 12 11 15 15 F 1.35104 * 119.86136 * 180.02562 * 14 13 12 16 16 C 1.38332 * 120.27758 * 0.02562 * 14 13 12 17 17 C 1.38711 * 120.02490 * 359.74447 * 16 14 13 18 18 O 1.35675 * 120.11834 * 180.27108 * 17 16 14 19 19 C 1.34808 * 117.00465 * 354.40228 * 18 17 16 20 20 H 1.08005 * 119.99666 * 5.06443 * 19 18 17 21 21 C 1.38632 * 120.00087 * 185.06338 * 19 18 17 22 22 N 1.31560 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00056 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47214 * 89.99921 * 23 21 19 25 25 H 1.48502 * 109.47174 * 209.99681 * 23 21 19 26 26 H 1.48497 * 109.47258 * 329.99936 * 23 21 19 27 27 H 1.09000 * 109.47314 * 270.02441 * 1 2 3 28 28 H 1.08997 * 109.47083 * 30.02882 * 1 2 3 29 29 H 1.09000 * 109.46836 * 150.02607 * 1 2 3 30 30 H 1.08005 * 120.38543 * 359.95131 * 3 2 1 31 31 H 1.09000 * 109.47455 * 89.99093 * 6 5 4 32 32 H 1.08998 * 109.47429 * 209.99960 * 6 5 4 33 33 H 1.09008 * 109.46628 * 329.99431 * 6 5 4 34 34 H 1.08993 * 109.47135 * 90.00507 * 7 5 4 35 35 H 1.09006 * 109.47215 * 210.00610 * 7 5 4 36 36 H 1.09002 * 109.46792 * 330.00152 * 7 5 4 37 37 H 1.08004 * 119.65791 * 179.71427 * 9 8 4 38 38 H 1.08002 * 120.01591 * 0.02562 * 12 11 10 39 39 H 1.07995 * 119.87838 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.99244 * 179.97438 * 16 14 13 41 41 H 0.97005 * 120.00498 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1861 0.0000 4 6 3.6056 1.1480 0.0005 5 7 4.3242 2.3374 0.0000 6 6 3.6212 3.6180 0.1096 7 6 5.7848 2.3108 -0.1100 8 7 4.2537 -0.0072 0.0065 9 6 3.6157 -1.1604 0.0012 10 6 2.2238 -1.2023 0.0007 11 6 1.5109 -2.5024 0.0003 12 6 1.6208 -3.3605 1.0921 13 6 0.9554 -4.5693 1.0884 14 6 0.1761 -4.9343 0.0009 15 9 -0.4724 -6.1195 0.0056 16 6 0.0600 -4.0899 -1.0886 17 6 0.7201 -2.8699 -1.0948 18 8 0.6030 -2.0379 -2.1600 19 6 -0.0740 -2.5033 -3.2288 20 1 -0.5637 -3.4648 -3.1809 21 6 -0.1418 -1.7479 -4.3892 22 7 0.4542 -0.5765 -4.4472 23 14 -1.0807 -2.3925 -5.8699 24 1 -2.4948 -1.9459 -5.7922 25 1 -0.4634 -1.8675 -7.1143 26 1 -1.0302 -3.8766 -5.8803 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6936 2.1325 -0.0008 31 1 3.5230 3.8899 1.1605 32 1 4.1866 4.3889 -0.4140 33 1 2.6306 3.5280 -0.3365 34 1 6.0708 2.3499 -1.1610 35 1 6.2043 3.1703 0.4129 36 1 6.1661 1.3923 0.3364 37 1 4.1782 -2.0824 0.0017 38 1 2.2257 -3.0794 1.9415 39 1 1.0419 -5.2337 1.9354 40 1 -0.5478 -4.3789 -1.9332 41 1 0.4066 -0.0476 -5.2591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241243017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:53 Heat of formation + Delta-G solvation = -14.938920 kcal Electronic energy + Delta-G solvation = -26211.101507 eV Core-core repulsion = 22391.959250 eV Total energy + Delta-G solvation = -3819.142258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.82428 -41.50921 -40.47919 -38.14649 -37.31246 -34.77338 -34.26773 -32.71630 -30.95131 -29.84472 -29.32691 -28.09285 -27.30473 -25.87718 -23.99348 -23.31906 -22.84846 -21.30018 -20.04785 -19.15825 -17.97249 -17.74757 -17.31453 -16.95990 -16.88903 -16.53980 -16.15704 -15.94849 -15.58066 -15.51195 -15.12111 -15.04275 -14.88811 -14.61395 -14.18100 -13.89160 -13.58954 -13.50402 -13.43038 -13.35906 -13.15179 -12.93330 -12.82616 -12.76215 -12.40772 -12.29944 -12.20094 -12.11431 -11.46647 -10.80384 -10.71185 -10.44137 -10.22405 -9.62448 -9.04517 -8.47083 -8.27720 -6.14042 0.13665 0.45409 0.57781 0.68382 1.34614 1.41723 1.49813 2.09342 2.14759 2.67389 2.99159 3.08719 3.29184 3.52293 3.62805 3.88862 4.01484 4.06342 4.12348 4.25165 4.30654 4.41270 4.48016 4.52250 4.55995 4.65918 4.76018 4.82440 4.84757 4.91842 4.96026 4.98446 5.06962 5.07842 5.19092 5.25548 5.32737 5.44699 5.55737 5.70404 5.76728 5.98282 6.08629 6.12845 6.45625 6.96927 7.25486 7.73162 8.72671 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.005264 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.214949 B = 5318.045861 C = 7365.252033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.015 3.985 3 C -0.246 4.246 4 C 0.385 3.615 5 N -0.626 5.626 6 C 0.092 3.908 7 C 0.101 3.899 8 N -0.561 5.561 9 C 0.151 3.849 10 C -0.144 4.144 11 C -0.118 4.118 12 C -0.027 4.027 13 C -0.218 4.218 14 C 0.132 3.868 15 F -0.148 7.148 16 C -0.286 4.286 17 C 0.160 3.840 18 O -0.190 6.190 19 C -0.416 4.416 20 H 0.096 0.904 21 C -0.008 4.008 22 N -0.902 5.902 23 Si 1.007 2.993 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.258 1.258 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.145 0.855 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.126 0.874 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 4.137 10.849 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 C -0.271 4.271 4 C 0.151 3.849 5 N -0.342 5.342 6 C -0.050 4.050 7 C -0.041 4.041 8 N -0.279 5.279 9 C -0.006 4.006 10 C -0.149 4.149 11 C -0.120 4.120 12 C -0.045 4.045 13 C -0.237 4.237 14 C 0.113 3.887 15 F -0.127 7.127 16 C -0.306 4.306 17 C 0.107 3.893 18 O -0.095 6.095 19 C -0.492 4.492 20 H 0.113 0.887 21 C -0.208 4.208 22 N -0.539 5.539 23 Si 0.827 3.173 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.182 1.182 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.177 0.823 40 H 0.143 0.857 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.676 4.719 10.654 12.961 hybrid contribution -1.615 -0.606 -1.291 2.154 sum 4.061 4.113 9.363 11.004 Atomic orbital electron populations 1.20767 0.90513 1.02899 1.02359 1.20248 0.96649 0.92005 0.90330 1.21332 0.92960 0.99183 1.13588 1.18537 0.88281 0.86940 0.91120 1.46385 1.06688 1.02573 1.78508 1.21871 0.97837 0.83014 1.02311 1.21585 0.78291 1.03422 1.00842 1.67069 1.40554 0.97610 1.22637 1.22654 0.90545 0.95059 0.92365 1.19164 0.94075 0.92246 1.09406 1.17935 1.03029 0.96363 0.94710 1.20963 0.96386 0.91156 0.95977 1.20921 1.03500 1.00024 0.99231 1.17616 0.94500 0.81064 0.95500 1.91426 1.79813 1.44551 1.96889 1.21018 1.10555 0.97498 1.01535 1.19442 0.92428 0.88616 0.88808 1.84037 1.66261 1.37918 1.21237 1.21723 1.31430 1.05686 0.90375 0.88673 1.26337 0.98126 0.95606 1.00748 1.70186 1.42319 1.12109 1.29254 0.84742 0.77935 0.78856 0.75739 1.18778 1.19785 1.18214 0.89056 0.91741 0.92524 0.83759 0.91608 0.89084 0.91690 0.94255 0.89030 0.91613 0.81610 0.82112 0.82298 0.85670 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 9.53 71.24 0.68 -3.44 16 2 C 0.02 0.60 5.71 -19.48 -0.11 0.49 16 3 C -0.25 -8.79 8.96 22.47 0.20 -8.59 16 4 C 0.39 13.52 7.37 133.07 0.98 14.50 16 5 N -0.63 -17.24 3.39 -753.88 -2.55 -19.80 16 6 C 0.09 1.79 10.28 127.77 1.31 3.11 16 7 C 0.10 2.31 10.50 127.77 1.34 3.65 16 8 N -0.56 -20.77 9.05 -192.35 -1.74 -22.51 16 9 C 0.15 5.59 10.89 84.94 0.93 6.51 16 10 C -0.14 -5.71 4.95 -19.94 -0.10 -5.81 16 11 C -0.12 -4.67 4.71 -19.93 -0.09 -4.76 16 12 C -0.03 -0.84 9.73 22.47 0.22 -0.62 16 13 C -0.22 -6.67 10.01 22.31 0.22 -6.44 16 14 C 0.13 4.90 7.29 22.40 0.16 5.06 16 15 F -0.15 -5.27 17.26 44.97 0.78 -4.49 16 16 C -0.29 -12.47 9.14 22.41 0.20 -12.27 16 17 C 0.16 7.47 5.31 22.81 0.12 7.59 16 18 O -0.19 -10.53 7.70 -21.68 -0.17 -10.70 16 19 C -0.42 -23.16 9.49 67.91 0.64 -22.52 16 20 H 0.10 5.00 5.21 -2.91 -0.02 4.98 16 21 C -0.01 -0.46 5.49 84.83 0.47 0.01 16 22 N -0.90 -53.08 13.67 21.61 0.30 -52.79 16 23 Si 1.01 42.18 29.55 68.60 2.03 44.20 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 29 H 0.06 2.52 4.82 -2.39 -0.01 2.51 16 30 H 0.14 4.41 6.00 -2.91 -0.02 4.39 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 33 H 0.06 1.37 5.96 -2.38 -0.01 1.35 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.43 8.07 -2.38 -0.02 1.41 16 36 H 0.07 1.67 7.29 -2.39 -0.02 1.65 16 37 H 0.17 5.35 8.06 -2.91 -0.02 5.33 16 38 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 39 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.13 5.70 5.64 -2.91 -0.02 5.68 16 41 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -68.97 347.37 6.89 -62.09 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 1.07 Total: 27.53 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 7.18 Total: -23.53 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -4.00 Total: -95.10 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.17 Total: -10.70 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -68.97 6.89 -62.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241243017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.147 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds