Wall clock time and date at job start Tue Mar 31 2020 11:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 116.99848 * 2 1 4 4 C 1.38474 * 120.12784 * 359.97438 * 3 2 1 5 5 C 1.38449 * 120.06658 * 180.02562 * 4 3 2 6 6 F 1.35093 * 119.84127 * 180.02562 * 5 4 3 7 7 C 1.38838 * 120.32465 * 0.04278 * 5 4 3 8 8 C 1.50696 * 119.86982 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47138 * 120.02543 * 8 7 5 10 10 C 1.53005 * 109.47274 * 240.02606 * 8 7 5 11 11 C 1.37760 * 120.25980 * 0.02562 * 7 5 4 12 12 C 1.39728 * 119.92766 * 0.23214 * 11 7 5 13 13 C 1.47715 * 120.16123 * 179.75013 * 12 11 7 14 14 C 1.40550 * 120.79559 * 309.71602 * 13 12 11 15 15 N 1.31550 * 119.07633 * 179.76029 * 14 13 12 16 16 C 1.33681 * 120.84272 * 0.52724 * 15 14 13 17 17 C 1.40972 * 119.12452 * 179.70404 * 16 15 14 18 18 H 1.07999 * 119.99699 * 180.02562 * 17 16 15 19 19 C 1.40108 * 119.99876 * 0.02562 * 17 16 15 20 20 N 1.30686 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00204 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46836 * 60.00135 * 21 19 17 23 23 H 1.48493 * 109.47601 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47098 * 300.00706 * 21 19 17 25 25 N 1.33685 * 121.75532 * 359.72021 * 16 15 14 26 26 C 1.31544 * 120.83617 * 0.02562 * 25 16 15 27 27 H 1.09004 * 109.46946 * 60.00598 * 1 2 3 28 28 H 1.08998 * 109.46586 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 300.00313 * 1 2 3 30 30 H 1.08002 * 119.97093 * 0.02741 * 4 3 2 31 31 H 1.08992 * 109.47231 * 0.02562 * 8 7 5 32 32 H 1.09006 * 109.46928 * 60.00042 * 9 8 7 33 33 H 1.08992 * 109.46951 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.46767 * 300.00018 * 9 8 7 35 35 H 1.08995 * 109.46901 * 59.99457 * 10 8 7 36 36 H 1.08997 * 109.47113 * 180.02562 * 10 8 7 37 37 H 1.09006 * 109.46668 * 299.99888 * 10 8 7 38 38 H 1.08002 * 120.03250 * 179.97438 * 11 7 5 39 39 H 1.07993 * 120.46358 * 0.02562 * 14 13 12 40 40 H 0.96997 * 120.00520 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.45622 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2937 2.3727 -0.0005 5 6 1.9235 3.6056 -0.0011 6 9 1.1858 4.7373 -0.0011 7 6 3.3097 3.6847 -0.0020 8 6 3.9845 5.0321 -0.0031 9 6 4.8591 5.1655 1.2452 10 6 4.8566 5.1647 -1.2533 11 6 4.0705 2.5362 -0.0029 12 6 3.4460 1.2863 -0.0078 13 6 4.2568 0.0516 -0.0143 14 6 5.2955 -0.1223 -0.9451 15 7 5.9993 -1.2333 -0.9175 16 6 5.7301 -2.1932 -0.0269 17 6 6.5033 -3.3720 -0.0338 18 1 6.2978 -4.1567 0.6792 19 6 7.5384 -3.5254 -0.9655 20 7 7.7875 -2.5756 -1.8279 21 14 8.5626 -5.0875 -0.9751 22 1 7.6804 -6.2562 -1.2232 23 1 9.5855 -5.0023 -2.0481 24 1 9.2361 -5.2460 0.3389 25 7 4.7470 -2.0653 0.8699 26 6 4.0041 -0.9803 0.9059 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2151 2.3180 -0.0005 31 1 3.2285 5.8171 -0.0026 32 1 5.6153 4.3804 1.2447 33 1 5.3468 6.1402 1.2446 34 1 4.2378 5.0711 2.1358 35 1 4.2335 5.0695 -2.1426 36 1 5.3450 6.1391 -1.2539 37 1 5.6127 4.3795 -1.2538 38 1 5.1485 2.6020 -0.0040 39 1 5.5156 0.6474 -1.6700 40 1 8.5043 -2.6816 -2.4727 41 1 3.2117 -0.8832 1.6333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241786145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:12 Heat of formation + Delta-G solvation = -27.961394 kcal Electronic energy + Delta-G solvation = -25849.667352 eV Core-core repulsion = 22029.960398 eV Total energy + Delta-G solvation = -3819.706955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.73072 -40.02733 -38.65047 -37.75517 -34.82900 -33.88327 -32.00179 -31.64751 -29.33889 -28.84235 -27.18144 -27.10304 -25.95262 -23.24253 -22.74707 -22.46374 -21.02849 -19.68628 -18.24824 -17.91678 -16.91266 -16.00921 -15.76968 -15.68839 -15.52873 -15.20125 -14.92823 -14.50726 -14.37139 -14.08335 -13.80075 -13.27012 -13.10823 -12.86572 -12.74046 -12.57409 -12.28019 -12.12982 -11.97708 -11.86909 -11.39792 -11.31410 -11.29100 -11.24070 -10.78728 -10.72233 -10.67883 -10.52808 -10.37119 -9.55977 -9.17522 -9.15331 -8.77206 -8.17883 -7.52777 -7.20552 -6.60888 -4.77740 1.32019 1.52764 2.55547 3.00023 3.00420 3.03289 3.07770 3.48249 3.81319 3.86591 4.45077 4.56930 4.69228 4.83014 5.05486 5.10829 5.21464 5.22816 5.32016 5.46645 5.51648 5.56966 5.65490 5.79949 5.83159 5.87306 5.87825 5.89525 5.90707 5.99465 6.19667 6.25087 6.26605 6.34148 6.41730 6.50180 6.65991 6.86915 6.97023 7.05995 7.30508 7.55334 7.69482 8.07743 8.42602 8.50311 9.07032 10.02924 10.22246 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003631 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.636201 B = 7709.693479 C = 8937.635262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.140 3.860 4 C -0.238 4.238 5 C 0.105 3.895 6 F -0.145 7.145 7 C -0.138 4.138 8 C -0.051 4.051 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.062 4.062 12 C -0.005 4.005 13 C -0.323 4.323 14 C 0.181 3.819 15 N -0.508 5.508 16 C 0.385 3.615 17 C -0.385 4.385 18 H 0.094 0.906 19 C 0.063 3.937 20 N -0.701 5.701 21 Si 0.921 3.079 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.262 1.262 25 N -0.596 5.596 26 C 0.202 3.798 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.278 0.722 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 10.958 1.108 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.094 3.906 4 C -0.258 4.258 5 C 0.086 3.914 6 F -0.124 7.124 7 C -0.140 4.140 8 C -0.070 4.070 9 C -0.200 4.200 10 C -0.201 4.201 11 C -0.081 4.081 12 C -0.007 4.007 13 C -0.333 4.333 14 C 0.004 3.996 15 N -0.224 5.224 16 C 0.151 3.849 17 C -0.419 4.419 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.322 5.322 21 Si 0.744 3.256 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.186 1.186 25 N -0.314 5.314 26 C 0.027 3.973 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.089 0.911 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.816 9.866 0.901 12.025 hybrid contribution -0.750 0.634 -0.110 0.988 sum -7.566 10.499 0.791 12.966 Atomic orbital electron populations 1.23048 0.79288 1.03802 1.00871 1.86228 1.20368 1.26053 1.88140 1.18908 0.91629 0.83487 0.96608 1.20910 1.00363 0.91152 1.13375 1.17134 0.88391 0.81204 1.04673 1.91414 1.77105 1.49667 1.94224 1.19617 0.91130 0.96351 1.06856 1.19954 0.97499 0.93437 0.96084 1.21857 0.99581 1.01698 0.96910 1.21860 0.99601 1.01740 0.96880 1.20818 0.99783 0.89314 0.98160 1.18138 0.88601 0.93521 1.00448 1.19484 1.07117 0.97748 1.08919 1.23004 0.88585 0.94905 0.93065 1.69342 1.27427 1.01087 1.24580 1.19915 0.88008 0.92326 0.84633 1.19374 1.09749 0.99825 1.12967 0.88775 1.26180 0.97535 0.98335 0.94442 1.70124 1.22069 1.30126 1.09885 0.86165 0.79238 0.81081 0.79139 1.18622 1.19992 1.18612 1.68656 1.10535 1.24363 1.27862 1.22560 0.93733 0.87720 0.93248 0.93004 0.88343 0.92930 0.84943 0.90548 0.92067 0.92576 0.92677 0.92622 0.92569 0.92019 0.84733 0.85492 0.91070 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.93 8.90 -19.00 -0.17 -5.10 16 3 C 0.14 2.35 6.62 -38.73 -0.26 2.09 16 4 C -0.24 -3.49 9.01 -39.42 -0.35 -3.84 16 5 C 0.11 1.56 7.25 -39.28 -0.28 1.27 16 6 F -0.15 -2.08 16.17 2.25 0.04 -2.04 16 7 C -0.14 -1.99 4.79 -104.58 -0.50 -2.49 16 8 C -0.05 -0.62 3.07 -91.77 -0.28 -0.90 16 9 C -0.14 -1.57 9.00 37.16 0.33 -1.24 16 10 C -0.14 -1.58 9.00 37.16 0.33 -1.24 16 11 C -0.06 -0.99 8.20 -39.20 -0.32 -1.31 16 12 C 0.00 -0.08 5.53 -104.70 -0.58 -0.66 16 13 C -0.32 -7.03 5.32 -104.28 -0.55 -7.58 16 14 C 0.18 4.25 10.86 -16.80 -0.18 4.06 16 15 N -0.51 -13.76 7.82 -12.40 -0.10 -13.86 16 16 C 0.38 10.71 7.35 -158.14 -1.16 9.55 16 17 C -0.39 -10.35 9.34 -37.85 -0.35 -10.70 16 18 H 0.09 2.42 7.85 -52.49 -0.41 2.00 16 19 C 0.06 1.56 5.50 -17.34 -0.10 1.46 16 20 N -0.70 -17.92 11.40 55.55 0.63 -17.28 16 21 Si 0.92 17.96 29.56 -169.99 -5.02 12.94 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 23 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 N -0.60 -15.74 10.33 -12.40 -0.13 -15.87 16 26 C 0.20 4.69 10.10 -16.81 -0.17 4.52 16 27 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 31 H 0.08 0.90 7.11 -51.93 -0.37 0.53 16 32 H 0.06 0.70 7.37 -51.93 -0.38 0.31 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.70 7.37 -51.93 -0.38 0.31 16 38 H 0.13 2.05 7.07 -52.49 -0.37 1.68 16 39 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 40 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 41 H 0.13 2.66 7.75 -52.48 -0.41 2.25 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -29.69 349.47 -8.04 -37.73 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.12 Total: 3.95 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -3.44 Total: -5.73 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.41 Total: -47.01 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.17 Total: -5.10 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.69 -8.04 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241786145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.770 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds