Wall clock time and date at job start Tue Mar 31 2020 11:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 116.99848 * 2 1 4 4 C 1.38474 * 120.12784 * 359.97438 * 3 2 1 5 5 C 1.38449 * 120.06658 * 180.02562 * 4 3 2 6 6 F 1.35093 * 119.84127 * 180.02562 * 5 4 3 7 7 C 1.38838 * 120.32465 * 0.04278 * 5 4 3 8 8 C 1.50696 * 119.86982 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47138 * 120.02543 * 8 7 5 10 10 C 1.53005 * 109.47274 * 240.02606 * 8 7 5 11 11 C 1.37760 * 120.25980 * 0.02562 * 7 5 4 12 12 C 1.39728 * 119.92766 * 0.23214 * 11 7 5 13 13 C 1.47715 * 120.16123 * 179.75013 * 12 11 7 14 14 C 1.40550 * 120.79559 * 309.71602 * 13 12 11 15 15 N 1.31550 * 119.07633 * 179.76029 * 14 13 12 16 16 C 1.33681 * 120.84272 * 0.52724 * 15 14 13 17 17 C 1.40972 * 119.12452 * 179.70404 * 16 15 14 18 18 H 1.07999 * 119.99699 * 180.02562 * 17 16 15 19 19 C 1.40108 * 119.99876 * 0.02562 * 17 16 15 20 20 N 1.30686 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00204 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46836 * 60.00135 * 21 19 17 23 23 H 1.48493 * 109.47601 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47098 * 300.00706 * 21 19 17 25 25 N 1.33685 * 121.75532 * 359.72021 * 16 15 14 26 26 C 1.31544 * 120.83617 * 0.02562 * 25 16 15 27 27 H 1.09004 * 109.46946 * 60.00598 * 1 2 3 28 28 H 1.08998 * 109.46586 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 300.00313 * 1 2 3 30 30 H 1.08002 * 119.97093 * 0.02741 * 4 3 2 31 31 H 1.08992 * 109.47231 * 0.02562 * 8 7 5 32 32 H 1.09006 * 109.46928 * 60.00042 * 9 8 7 33 33 H 1.08992 * 109.46951 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.46767 * 300.00018 * 9 8 7 35 35 H 1.08995 * 109.46901 * 59.99457 * 10 8 7 36 36 H 1.08997 * 109.47113 * 180.02562 * 10 8 7 37 37 H 1.09006 * 109.46668 * 299.99888 * 10 8 7 38 38 H 1.08002 * 120.03250 * 179.97438 * 11 7 5 39 39 H 1.07993 * 120.46358 * 0.02562 * 14 13 12 40 40 H 0.96997 * 120.00520 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.45622 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2937 2.3727 -0.0005 5 6 1.9235 3.6056 -0.0011 6 9 1.1858 4.7373 -0.0011 7 6 3.3097 3.6847 -0.0020 8 6 3.9845 5.0321 -0.0031 9 6 4.8591 5.1655 1.2452 10 6 4.8566 5.1647 -1.2533 11 6 4.0705 2.5362 -0.0029 12 6 3.4460 1.2863 -0.0078 13 6 4.2568 0.0516 -0.0143 14 6 5.2955 -0.1223 -0.9451 15 7 5.9993 -1.2333 -0.9175 16 6 5.7301 -2.1932 -0.0269 17 6 6.5033 -3.3720 -0.0338 18 1 6.2978 -4.1567 0.6792 19 6 7.5384 -3.5254 -0.9655 20 7 7.7875 -2.5756 -1.8279 21 14 8.5626 -5.0875 -0.9751 22 1 7.6804 -6.2562 -1.2232 23 1 9.5855 -5.0023 -2.0481 24 1 9.2361 -5.2460 0.3389 25 7 4.7470 -2.0653 0.8699 26 6 4.0041 -0.9803 0.9059 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2151 2.3180 -0.0005 31 1 3.2285 5.8171 -0.0026 32 1 5.6153 4.3804 1.2447 33 1 5.3468 6.1402 1.2446 34 1 4.2378 5.0711 2.1358 35 1 4.2335 5.0695 -2.1426 36 1 5.3450 6.1391 -1.2539 37 1 5.6127 4.3795 -1.2538 38 1 5.1485 2.6020 -0.0040 39 1 5.5156 0.6474 -1.6700 40 1 8.5043 -2.6816 -2.4727 41 1 3.2117 -0.8832 1.6333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241786145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:11 Heat of formation + Delta-G solvation = -43.311121 kcal Electronic energy + Delta-G solvation = -25850.332966 eV Core-core repulsion = 22029.960398 eV Total energy + Delta-G solvation = -3820.372569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -49.91575 -41.38269 -40.40730 -38.90542 -36.08613 -35.54295 -33.80751 -33.32458 -30.75544 -30.20110 -28.31526 -27.96775 -27.59556 -24.75263 -24.38554 -23.89087 -22.52023 -20.83491 -19.78551 -19.43383 -18.24314 -17.70461 -17.08595 -16.92989 -16.80874 -16.65013 -16.28881 -16.13788 -15.51209 -15.19957 -14.92303 -14.77830 -14.46908 -14.22392 -14.19383 -13.97843 -13.68030 -13.25626 -13.09541 -13.03383 -12.95193 -12.87431 -12.67280 -12.40255 -12.15804 -11.97452 -11.76783 -11.67030 -11.61742 -11.30111 -11.11768 -10.97850 -10.25090 -9.59025 -9.32578 -8.80106 -8.43415 -6.71649 -0.03174 0.31098 0.81631 1.10412 1.40929 1.54191 1.54955 2.20067 2.37005 2.54901 2.77735 3.24802 3.65434 3.70761 3.83774 3.95723 4.01440 4.05116 4.11471 4.28085 4.31568 4.36268 4.38831 4.41048 4.46530 4.68190 4.73595 4.83215 4.84238 4.94141 5.00099 5.01281 5.07806 5.10247 5.17086 5.21231 5.34708 5.39741 5.53205 5.55566 5.77814 5.82712 6.12771 6.46611 6.51451 6.59862 7.17929 8.20440 8.34139 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003631 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.636201 B = 7709.693479 C = 8937.635262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.140 3.860 4 C -0.232 4.232 5 C 0.112 3.888 6 F -0.138 7.138 7 C -0.137 4.137 8 C -0.050 4.050 9 C -0.142 4.142 10 C -0.143 4.143 11 C -0.053 4.053 12 C -0.041 4.041 13 C -0.296 4.296 14 C 0.163 3.837 15 N -0.537 5.537 16 C 0.357 3.643 17 C -0.428 4.428 18 H 0.090 0.910 19 C 0.024 3.976 20 N -0.738 5.738 21 Si 1.000 3.000 22 H -0.258 1.258 23 H -0.260 1.260 24 H -0.257 1.257 25 N -0.622 5.622 26 C 0.188 3.812 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.287 0.713 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 12.576 1.020 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.094 3.906 4 C -0.251 4.251 5 C 0.093 3.907 6 F -0.117 7.117 7 C -0.139 4.139 8 C -0.069 4.069 9 C -0.199 4.199 10 C -0.200 4.200 11 C -0.072 4.072 12 C -0.043 4.043 13 C -0.306 4.306 14 C -0.011 4.011 15 N -0.254 5.254 16 C 0.122 3.878 17 C -0.462 4.462 18 H 0.109 0.891 19 C -0.201 4.201 20 N -0.360 5.360 21 Si 0.819 3.181 22 H -0.182 1.182 23 H -0.184 1.184 24 H -0.181 1.181 25 N -0.341 5.341 26 C 0.015 3.985 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.098 0.902 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.790 11.547 0.818 13.953 hybrid contribution -0.720 0.403 -0.048 0.827 sum -8.510 11.950 0.770 14.690 Atomic orbital electron populations 1.23371 0.76660 1.05339 1.02477 1.86188 1.23229 1.26362 1.88117 1.18898 0.91143 0.84343 0.96247 1.21087 1.01639 0.90181 1.12223 1.17280 0.88604 0.81482 1.03372 1.91440 1.76932 1.49314 1.94020 1.19837 0.91197 0.97010 1.05810 1.20032 0.97856 0.91982 0.97019 1.21852 0.99238 1.02616 0.96215 1.21859 0.99279 1.02681 0.96165 1.20798 1.00020 0.89021 0.97316 1.18071 0.89367 0.92707 1.04183 1.19686 1.05793 0.98465 1.06623 1.23443 0.89087 0.94632 0.93968 1.69298 1.28905 1.02078 1.25141 1.20299 0.88851 0.93193 0.85431 1.19672 1.11721 1.00101 1.14690 0.89140 1.27094 0.97896 1.01839 0.93228 1.70182 1.22974 1.32225 1.10604 0.85001 0.77417 0.76180 0.79537 1.18239 1.18431 1.18137 1.68647 1.11177 1.26030 1.28272 1.22952 0.93851 0.87640 0.94030 0.91529 0.87075 0.91019 0.82258 0.89853 0.92871 0.90554 0.92959 0.92934 0.90575 0.92728 0.84587 0.83410 0.90230 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -10.51 8.90 -90.88 -0.81 -11.32 16 3 C 0.14 4.49 6.62 22.82 0.15 4.65 16 4 C -0.23 -6.15 9.01 22.38 0.20 -5.95 16 5 C 0.11 2.99 7.25 22.46 0.16 3.16 16 6 F -0.14 -3.49 16.17 44.97 0.73 -2.77 16 7 C -0.14 -3.66 4.79 -19.83 -0.10 -3.76 16 8 C -0.05 -1.08 3.07 -11.54 -0.04 -1.12 16 9 C -0.14 -2.79 9.00 71.98 0.65 -2.14 16 10 C -0.14 -2.80 9.00 71.98 0.65 -2.15 16 11 C -0.05 -1.63 8.20 22.52 0.18 -1.45 16 12 C -0.04 -1.47 5.53 -19.92 -0.11 -1.58 16 13 C -0.30 -13.13 5.32 -19.65 -0.10 -13.23 16 14 C 0.16 7.88 10.86 85.30 0.93 8.81 16 15 N -0.54 -30.29 7.82 -193.14 -1.51 -31.80 16 16 C 0.36 20.83 7.35 134.86 0.99 21.82 16 17 C -0.43 -24.01 9.34 23.39 0.22 -23.79 16 18 H 0.09 4.90 7.85 -2.91 -0.02 4.88 16 19 C 0.02 1.21 5.50 85.32 0.47 1.68 16 20 N -0.74 -38.84 11.40 21.85 0.25 -38.59 16 21 Si 1.00 37.36 29.56 68.60 2.03 39.38 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 25 N -0.62 -34.22 10.33 -193.14 -2.00 -36.22 16 26 C 0.19 8.94 10.10 85.30 0.86 9.80 16 27 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 30 H 0.16 3.31 6.29 -2.91 -0.02 3.29 16 31 H 0.08 1.70 7.11 -2.39 -0.02 1.68 16 32 H 0.05 1.13 7.37 -2.38 -0.02 1.11 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.15 7.37 -2.38 -0.02 1.13 16 38 H 0.14 4.08 7.07 -2.91 -0.02 4.06 16 39 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 40 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 41 H 0.15 6.21 7.75 -2.91 -0.02 6.19 16 Total: -1.00 -66.78 349.47 5.98 -60.81 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.06 Total: 24.33 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 6.23 Total: -3.82 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -3.26 Total: -106.61 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.81 Total: -11.32 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.73 Total: -2.77 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.38 kcal Total: -66.78 5.98 -60.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241786145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.496 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds