Wall clock time and date at job start Tue Mar 31 2020 11:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35793 * 116.99849 * 2 1 4 4 C 1.38544 * 120.11502 * 359.97438 * 3 2 1 5 5 C 1.38385 * 120.04891 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.87057 * 180.02562 * 5 4 3 7 7 C 1.38701 * 120.27309 * 0.02562 * 5 4 3 8 8 C 1.50699 * 119.88796 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47058 * 120.00165 * 8 7 5 10 10 C 1.53008 * 109.46828 * 239.99755 * 8 7 5 11 11 C 1.37885 * 120.22506 * 359.73897 * 7 5 4 12 12 C 1.39433 * 119.95091 * 0.49564 * 11 7 5 13 13 C 1.48132 * 120.13862 * 179.79000 * 12 11 7 14 14 C 1.40141 * 119.99151 * 359.68975 * 13 12 11 15 15 N 1.32146 * 120.28821 * 180.02562 * 14 13 12 16 16 C 1.31905 * 120.29280 * 359.70800 * 15 14 13 17 17 C 1.40814 * 119.98275 * 0.59430 * 16 15 14 18 18 C 1.41310 * 120.14166 * 179.67832 * 17 16 15 19 19 H 1.07999 * 119.99999 * 204.97643 * 18 17 16 20 20 C 1.40044 * 119.99552 * 24.97693 * 18 17 16 21 21 N 1.30734 * 120.00227 * 17.52312 * 20 18 17 22 22 Si 1.86800 * 119.99627 * 197.51258 * 20 18 17 23 23 H 1.48494 * 109.47623 * 265.19099 * 22 20 18 24 24 H 1.48506 * 109.46993 * 25.19357 * 22 20 18 25 25 H 1.48506 * 109.46909 * 145.18889 * 22 20 18 26 26 N 1.32572 * 120.00019 * 179.72286 * 13 12 11 27 27 H 1.08998 * 109.47387 * 300.00238 * 1 2 3 28 28 H 1.09003 * 109.47378 * 59.99658 * 1 2 3 29 29 H 1.09002 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.97596 * 0.02776 * 4 3 2 31 31 H 1.08998 * 109.47090 * 359.97438 * 8 7 5 32 32 H 1.08999 * 109.47371 * 59.99996 * 9 8 7 33 33 H 1.08999 * 109.46461 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.46762 * 299.99514 * 9 8 7 35 35 H 1.08998 * 109.46616 * 60.00170 * 10 8 7 36 36 H 1.08999 * 109.46616 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.46997 * 299.99704 * 10 8 7 38 38 H 1.07998 * 120.02151 * 180.27412 * 11 7 5 39 39 H 1.08008 * 119.85500 * 0.02889 * 14 13 12 40 40 H 1.07997 * 120.00842 * 180.27419 * 16 15 14 41 41 H 0.97001 * 119.99873 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2932 2.3734 -0.0005 5 6 1.9228 3.6057 0.0000 6 9 1.1857 4.7379 0.0000 7 6 3.3076 3.6833 0.0005 8 6 3.9843 5.0298 0.0017 9 6 4.8573 5.1608 1.2513 10 6 4.8582 5.1625 -1.2472 11 6 4.0673 2.5326 0.0060 12 6 3.4427 1.2860 0.0005 13 6 4.2548 0.0472 0.0016 14 6 5.6540 0.1268 0.0016 15 7 6.3842 -0.9746 0.0021 16 6 5.8026 -2.1585 0.0084 17 6 4.3976 -2.2524 0.0020 18 6 3.7711 -3.5190 0.0018 19 1 2.7736 -3.6279 -0.3976 20 6 4.4437 -4.6328 0.5196 21 7 5.4792 -4.4666 1.3001 22 14 3.8609 -6.3561 0.0952 23 1 2.9522 -6.8482 1.1616 24 1 3.1349 -6.3282 -1.2000 25 1 5.0326 -7.2621 -0.0137 26 7 3.6581 -1.1366 0.0019 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2145 2.3185 -0.0005 31 1 3.2292 5.8159 0.0015 32 1 5.6124 4.3748 1.2511 33 1 5.3463 6.1350 1.2523 34 1 4.2347 5.0663 2.1410 35 1 4.2362 5.0691 -2.1374 36 1 5.3473 6.1366 -1.2465 37 1 5.6133 4.3764 -1.2474 38 1 5.1454 2.5969 0.0109 39 1 6.1376 1.0925 0.0013 40 1 6.4038 -3.0556 0.0132 41 1 5.9448 -5.2382 1.6590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241786342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:06 Heat of formation + Delta-G solvation = -30.874238 kcal Electronic energy + Delta-G solvation = -26052.004588 eV Core-core repulsion = 22232.171323 eV Total energy + Delta-G solvation = -3819.833265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.82931 -40.07676 -38.75008 -37.72903 -34.85211 -34.11689 -32.66251 -31.43569 -29.29014 -28.61060 -27.13578 -27.06714 -25.99315 -23.59632 -23.13571 -21.93688 -21.17039 -19.70744 -18.26615 -17.61826 -16.94024 -15.82847 -15.71990 -15.68295 -15.48362 -15.29899 -15.11283 -14.82331 -14.21343 -14.09873 -13.73978 -13.45198 -13.36640 -13.12098 -12.87582 -12.55355 -12.29257 -12.04698 -11.93819 -11.59900 -11.42259 -11.25555 -11.25056 -11.10107 -10.91557 -10.71643 -10.67843 -10.48731 -10.40527 -9.78188 -9.77535 -9.43562 -8.71010 -8.13906 -7.37234 -7.18599 -7.03828 -4.68968 1.07649 1.49947 2.50526 2.85289 2.98843 3.03814 3.10917 3.61619 3.78291 3.88622 4.35905 4.49736 4.64082 4.72460 4.96290 5.10946 5.18942 5.20071 5.36108 5.37556 5.43602 5.62265 5.66461 5.69940 5.72262 5.78786 5.83787 5.90597 5.97896 6.12223 6.14789 6.16413 6.23112 6.23646 6.40568 6.54025 6.68851 6.87797 6.93193 7.08883 7.23704 7.61775 7.75186 8.16388 8.43187 8.51858 9.16850 9.65817 9.95209 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.003835 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.327915 B = 7299.438733 C = 8540.586472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.252 6.252 3 C 0.182 3.818 4 C -0.256 4.256 5 C 0.132 3.868 6 F -0.141 7.141 7 C -0.155 4.155 8 C -0.049 4.049 9 C -0.144 4.144 10 C -0.144 4.144 11 C -0.038 4.038 12 C -0.058 4.058 13 C 0.133 3.867 14 C -0.089 4.089 15 N -0.444 5.444 16 C 0.009 3.991 17 C 0.226 3.774 18 C -0.421 4.421 19 H 0.091 0.909 20 C 0.075 3.925 21 N -0.785 5.785 22 Si 0.923 3.077 23 H -0.268 1.268 24 H -0.257 1.257 25 H -0.272 1.272 26 N -0.491 5.491 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.159 0.841 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 11.644 -1.718 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.161 6.161 3 C 0.134 3.866 4 C -0.275 4.275 5 C 0.113 3.887 6 F -0.120 7.120 7 C -0.156 4.156 8 C -0.068 4.068 9 C -0.202 4.202 10 C -0.201 4.201 11 C -0.057 4.057 12 C -0.060 4.060 13 C -0.011 4.011 14 C -0.246 4.246 15 N -0.155 5.155 16 C -0.161 4.161 17 C 0.097 3.903 18 C -0.454 4.454 19 H 0.109 0.891 20 C -0.146 4.146 21 N -0.410 5.410 22 Si 0.746 3.254 23 H -0.193 1.193 24 H -0.181 1.181 25 H -0.197 1.197 26 N -0.209 5.209 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.176 0.824 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.148 11.371 -1.581 12.581 hybrid contribution -0.697 -0.446 0.046 0.829 sum -5.845 10.925 -1.535 12.485 Atomic orbital electron populations 1.23121 0.80175 1.04020 1.00359 1.86682 1.19295 1.23971 1.86154 1.18887 0.91385 0.84266 0.92099 1.21011 1.00785 0.91041 1.14700 1.17197 0.88434 0.81257 1.01858 1.91434 1.77121 1.49549 1.93901 1.19547 0.91121 0.96336 1.08631 1.19936 0.97523 0.93209 0.96111 1.21871 0.99604 1.01760 0.96921 1.21868 0.99585 1.01753 0.96919 1.20725 1.00138 0.89076 0.95752 1.18192 0.89396 0.92732 1.05720 1.20131 0.91252 0.91665 0.98011 1.22593 0.90666 0.96793 1.14510 1.67886 1.40140 0.98977 1.08509 1.23843 0.94485 0.94456 1.03339 1.19373 0.90427 0.91873 0.88608 1.19328 1.02470 0.89761 1.33845 0.89136 1.26024 0.93927 1.02354 0.92277 1.69733 1.16426 1.34054 1.20824 0.86057 0.79316 0.79718 0.80314 1.19298 1.18083 1.19726 1.69125 1.37649 0.96623 1.17536 0.93229 0.93260 0.88093 0.84467 0.90404 0.92059 0.92479 0.92591 0.92605 0.92485 0.92071 0.84089 0.85383 0.82440 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.25 -4.85 8.35 -19.09 -0.16 -5.01 16 3 C 0.18 3.35 6.69 -38.83 -0.26 3.09 16 4 C -0.26 -3.92 9.01 -39.41 -0.35 -4.27 16 5 C 0.13 1.96 7.24 -39.36 -0.29 1.68 16 6 F -0.14 -1.99 16.17 2.25 0.04 -1.96 16 7 C -0.16 -2.22 4.79 -104.58 -0.50 -2.72 16 8 C -0.05 -0.57 3.07 -91.77 -0.28 -0.85 16 9 C -0.14 -1.52 9.00 37.16 0.33 -1.18 16 10 C -0.14 -1.50 9.01 37.16 0.33 -1.16 16 11 C -0.04 -0.60 8.07 -39.27 -0.32 -0.92 16 12 C -0.06 -1.13 5.89 -104.75 -0.62 -1.75 16 13 C 0.13 3.13 6.74 -82.77 -0.56 2.58 16 14 C -0.09 -2.05 10.62 -16.70 -0.18 -2.23 16 15 N -0.44 -11.33 10.47 -12.03 -0.13 -11.45 16 16 C 0.01 0.24 9.88 -16.55 -0.16 0.08 16 17 C 0.23 6.13 6.41 -84.84 -0.54 5.59 16 18 C -0.42 -10.93 9.29 -37.74 -0.35 -11.28 16 19 H 0.09 2.30 7.91 -52.49 -0.41 1.88 16 20 C 0.08 1.78 5.14 -17.34 -0.09 1.70 16 21 N -0.78 -19.29 10.96 55.55 0.61 -18.68 16 22 Si 0.92 17.62 29.59 -169.99 -5.03 12.59 16 23 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 N -0.49 -12.83 8.27 -7.52 -0.06 -12.89 16 27 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.14 1.77 6.30 -52.49 -0.33 1.44 16 31 H 0.08 0.88 7.11 -51.93 -0.37 0.51 16 32 H 0.06 0.65 7.36 -51.93 -0.38 0.27 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.64 7.39 -51.93 -0.38 0.26 16 38 H 0.14 2.04 5.21 -52.49 -0.27 1.77 16 39 H 0.13 2.50 6.19 -52.48 -0.32 2.17 16 40 H 0.16 4.19 6.17 -52.49 -0.32 3.87 16 41 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -29.31 343.73 -7.24 -36.54 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.85 Total: 6.09 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.84 Total: -10.41 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.42 Total: -43.02 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.16 Total: -5.01 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.31 -7.24 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241786342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.669 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds