Wall clock time and date at job start Tue Mar 31 2020 11:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35793 * 116.99849 * 2 1 4 4 C 1.38544 * 120.11502 * 359.97438 * 3 2 1 5 5 C 1.38385 * 120.04891 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.87057 * 180.02562 * 5 4 3 7 7 C 1.38701 * 120.27309 * 0.02562 * 5 4 3 8 8 C 1.50699 * 119.88796 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47058 * 120.00165 * 8 7 5 10 10 C 1.53008 * 109.46828 * 239.99755 * 8 7 5 11 11 C 1.37885 * 120.22506 * 359.73897 * 7 5 4 12 12 C 1.39433 * 119.95091 * 0.49564 * 11 7 5 13 13 C 1.48132 * 120.13862 * 179.79000 * 12 11 7 14 14 C 1.40141 * 119.99151 * 359.68975 * 13 12 11 15 15 N 1.32146 * 120.28821 * 180.02562 * 14 13 12 16 16 C 1.31905 * 120.29280 * 359.70800 * 15 14 13 17 17 C 1.40814 * 119.98275 * 0.59430 * 16 15 14 18 18 C 1.41310 * 120.14166 * 179.67832 * 17 16 15 19 19 H 1.07999 * 119.99999 * 204.97643 * 18 17 16 20 20 C 1.40044 * 119.99552 * 24.97693 * 18 17 16 21 21 N 1.30734 * 120.00227 * 17.52312 * 20 18 17 22 22 Si 1.86800 * 119.99627 * 197.51258 * 20 18 17 23 23 H 1.48494 * 109.47623 * 265.19099 * 22 20 18 24 24 H 1.48506 * 109.46993 * 25.19357 * 22 20 18 25 25 H 1.48506 * 109.46909 * 145.18889 * 22 20 18 26 26 N 1.32572 * 120.00019 * 179.72286 * 13 12 11 27 27 H 1.08998 * 109.47387 * 300.00238 * 1 2 3 28 28 H 1.09003 * 109.47378 * 59.99658 * 1 2 3 29 29 H 1.09002 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.97596 * 0.02776 * 4 3 2 31 31 H 1.08998 * 109.47090 * 359.97438 * 8 7 5 32 32 H 1.08999 * 109.47371 * 59.99996 * 9 8 7 33 33 H 1.08999 * 109.46461 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.46762 * 299.99514 * 9 8 7 35 35 H 1.08998 * 109.46616 * 60.00170 * 10 8 7 36 36 H 1.08999 * 109.46616 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.46997 * 299.99704 * 10 8 7 38 38 H 1.07998 * 120.02151 * 180.27412 * 11 7 5 39 39 H 1.08008 * 119.85500 * 0.02889 * 14 13 12 40 40 H 1.07997 * 120.00842 * 180.27419 * 16 15 14 41 41 H 0.97001 * 119.99873 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2932 2.3734 -0.0005 5 6 1.9228 3.6057 0.0000 6 9 1.1857 4.7379 0.0000 7 6 3.3076 3.6833 0.0005 8 6 3.9843 5.0298 0.0017 9 6 4.8573 5.1608 1.2513 10 6 4.8582 5.1625 -1.2472 11 6 4.0673 2.5326 0.0060 12 6 3.4427 1.2860 0.0005 13 6 4.2548 0.0472 0.0016 14 6 5.6540 0.1268 0.0016 15 7 6.3842 -0.9746 0.0021 16 6 5.8026 -2.1585 0.0084 17 6 4.3976 -2.2524 0.0020 18 6 3.7711 -3.5190 0.0018 19 1 2.7736 -3.6279 -0.3976 20 6 4.4437 -4.6328 0.5196 21 7 5.4792 -4.4666 1.3001 22 14 3.8609 -6.3561 0.0952 23 1 2.9522 -6.8482 1.1616 24 1 3.1349 -6.3282 -1.2000 25 1 5.0326 -7.2621 -0.0137 26 7 3.6581 -1.1366 0.0019 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2145 2.3185 -0.0005 31 1 3.2292 5.8159 0.0015 32 1 5.6124 4.3748 1.2511 33 1 5.3463 6.1350 1.2523 34 1 4.2347 5.0663 2.1410 35 1 4.2362 5.0691 -2.1374 36 1 5.3473 6.1366 -1.2465 37 1 5.6133 4.3764 -1.2474 38 1 5.1454 2.5969 0.0109 39 1 6.1376 1.0925 0.0013 40 1 6.4038 -3.0556 0.0132 41 1 5.9448 -5.2382 1.6590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241786342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:05 Heat of formation + Delta-G solvation = -47.107068 kcal Electronic energy + Delta-G solvation = -26052.708496 eV Core-core repulsion = 22232.171323 eV Total energy + Delta-G solvation = -3820.537173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.01163 -41.50657 -40.47796 -38.92757 -36.19129 -35.74048 -34.45074 -33.06688 -30.64033 -30.06653 -28.37311 -27.93537 -27.70878 -25.15440 -24.53422 -23.52585 -22.71207 -20.87110 -19.62503 -19.28992 -18.37020 -17.46252 -17.16809 -17.03431 -16.93022 -16.76426 -16.47926 -16.30487 -15.45596 -15.23110 -15.02643 -14.93812 -14.82592 -14.23361 -14.17760 -13.75594 -13.53539 -13.31356 -13.11612 -12.99436 -12.98182 -12.93621 -12.68109 -12.26202 -12.13625 -12.00698 -11.75661 -11.73571 -11.71330 -11.60918 -11.54441 -11.13636 -10.27689 -9.57145 -9.25830 -8.85639 -8.76954 -6.64378 -0.34362 0.25849 0.73780 1.07819 1.40300 1.50473 1.58340 2.17847 2.41252 2.45904 2.72545 3.13054 3.40215 3.61396 3.67227 3.75210 3.93623 4.03386 4.16287 4.29490 4.33426 4.38566 4.39616 4.42478 4.62127 4.62578 4.71101 4.78401 4.83911 4.87125 4.98528 5.02120 5.04413 5.11156 5.15509 5.17133 5.35103 5.41668 5.43391 5.52663 5.69897 5.74856 6.19015 6.49169 6.55165 6.59976 7.24204 7.74167 8.17069 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.003835 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.327915 B = 7299.438733 C = 8540.586472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.292 6.292 3 C 0.171 3.829 4 C -0.249 4.249 5 C 0.140 3.860 6 F -0.132 7.132 7 C -0.149 4.149 8 C -0.048 4.048 9 C -0.144 4.144 10 C -0.144 4.144 11 C -0.025 4.025 12 C -0.099 4.099 13 C 0.134 3.866 14 C -0.098 4.098 15 N -0.452 5.452 16 C -0.026 4.026 17 C 0.200 3.800 18 C -0.450 4.450 19 H 0.085 0.915 20 C 0.040 3.960 21 N -0.812 5.812 22 Si 1.000 3.000 23 H -0.259 1.259 24 H -0.256 1.256 25 H -0.259 1.259 26 N -0.512 5.512 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.163 0.837 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.148 0.852 41 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 13.311 -1.821 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.203 6.203 3 C 0.122 3.878 4 C -0.268 4.268 5 C 0.121 3.879 6 F -0.111 7.111 7 C -0.150 4.150 8 C -0.066 4.066 9 C -0.201 4.201 10 C -0.201 4.201 11 C -0.044 4.044 12 C -0.101 4.101 13 C -0.010 4.010 14 C -0.256 4.256 15 N -0.164 5.164 16 C -0.195 4.195 17 C 0.072 3.928 18 C -0.483 4.483 19 H 0.103 0.897 20 C -0.179 4.179 21 N -0.437 5.437 22 Si 0.819 3.181 23 H -0.184 1.184 24 H -0.180 1.180 25 H -0.183 1.183 26 N -0.231 5.231 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.180 0.820 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.182 0.818 40 H 0.165 0.835 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.060 13.031 -1.677 14.469 hybrid contribution -0.507 -0.709 0.107 0.878 sum -6.567 12.322 -1.570 14.051 Atomic orbital electron populations 1.23386 0.77684 1.05075 1.02192 1.86612 1.22152 1.25109 1.86416 1.19013 0.91274 0.84950 0.92533 1.21154 1.01897 0.90124 1.13644 1.17307 0.88772 0.81353 1.00507 1.91465 1.76948 1.48996 1.93649 1.19844 0.91050 0.97180 1.06961 1.20032 0.97935 0.91419 0.97249 1.21882 0.99318 1.02925 0.96017 1.21877 0.99301 1.02920 0.95988 1.20817 1.00855 0.88252 0.94476 1.18256 0.90066 0.92169 1.09622 1.20769 0.92152 0.92420 0.95680 1.23160 0.91015 0.97454 1.13997 1.67831 1.40786 0.99331 1.08444 1.23626 0.94416 0.94673 1.06740 1.19712 0.90924 0.92867 0.89291 1.19577 1.02789 0.90725 1.35237 0.89709 1.26959 0.93623 1.06077 0.91214 1.69766 1.17122 1.35936 1.20905 0.84923 0.79192 0.73979 0.79999 1.18383 1.17983 1.18263 1.69199 1.38080 0.97317 1.18465 0.91405 0.91209 0.87636 0.81998 0.89695 0.92402 0.90355 0.93126 0.93026 0.90385 0.92372 0.82823 0.81816 0.83476 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.41 16 2 O -0.29 -11.43 8.35 -91.23 -0.76 -12.19 16 3 C 0.17 6.22 6.69 22.75 0.15 6.37 16 4 C -0.25 -7.13 9.01 22.38 0.20 -6.93 16 5 C 0.14 3.80 7.24 22.42 0.16 3.96 16 6 F -0.13 -3.28 16.17 44.97 0.73 -2.56 16 7 C -0.15 -3.91 4.79 -19.84 -0.10 -4.00 16 8 C -0.05 -0.96 3.07 -11.54 -0.04 -0.99 16 9 C -0.14 -2.60 9.00 71.98 0.65 -1.95 16 10 C -0.14 -2.55 9.01 71.98 0.65 -1.90 16 11 C -0.03 -0.77 8.07 22.47 0.18 -0.58 16 12 C -0.10 -3.86 5.89 -19.95 -0.12 -3.97 16 13 C 0.13 6.50 6.74 42.12 0.28 6.78 16 14 C -0.10 -4.64 10.62 85.11 0.90 -3.73 16 15 N -0.45 -23.87 10.47 -191.98 -2.01 -25.88 16 16 C -0.03 -1.47 9.88 85.31 0.84 -0.63 16 17 C 0.20 11.41 6.41 40.22 0.26 11.67 16 18 C -0.45 -24.48 9.29 23.46 0.22 -24.26 16 19 H 0.08 4.53 7.91 -2.91 -0.02 4.50 16 20 C 0.04 1.93 5.14 85.29 0.44 2.37 16 21 N -0.81 -41.06 10.96 21.84 0.24 -40.82 16 22 Si 1.00 36.27 29.59 68.60 2.03 38.30 16 23 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 24 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 25 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 26 N -0.51 -27.91 8.27 -177.70 -1.47 -29.38 16 27 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 28 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 29 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.16 3.72 6.30 -2.91 -0.02 3.70 16 31 H 0.08 1.62 7.11 -2.39 -0.02 1.60 16 32 H 0.06 1.08 7.36 -2.39 -0.02 1.07 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.07 7.39 -2.39 -0.02 1.05 16 38 H 0.15 4.17 5.21 -2.91 -0.02 4.16 16 39 H 0.16 6.27 6.19 -2.91 -0.02 6.25 16 40 H 0.15 8.33 6.17 -2.91 -0.02 8.31 16 41 H 0.30 13.36 8.29 -92.71 -0.77 12.59 16 Total: -1.00 -66.59 343.73 5.63 -60.96 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 1.07 Total: 27.97 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 5.80 Total: -16.39 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -3.24 Total: -96.08 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.76 Total: -12.19 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.73 Total: -2.56 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -66.59 5.63 -60.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241786342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.849 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds