Wall clock time and date at job start Tue Mar 31 2020 10:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38909 * 119.24466 * 2 1 4 4 C 1.36859 * 119.81449 * 180.02562 * 3 2 1 5 5 C 1.41137 * 118.39937 * 0.02562 * 4 3 2 6 6 C 1.40833 * 120.72505 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00278 * 150.63296 * 6 5 4 8 8 C 1.40079 * 119.99872 * 330.64326 * 6 5 4 9 9 N 1.30769 * 120.00056 * 163.00916 * 8 6 5 10 10 Si 1.86806 * 119.99820 * 343.00595 * 8 6 5 11 11 H 1.48501 * 109.46932 * 90.39511 * 10 8 6 12 12 H 1.48503 * 109.46995 * 210.39058 * 10 8 6 13 13 H 1.48497 * 109.47077 * 330.39072 * 10 8 6 14 14 C 1.41922 * 118.55510 * 0.02562 * 5 4 3 15 15 C 1.47670 * 120.00008 * 179.97438 * 14 5 4 16 16 C 1.40275 * 120.46919 * 136.56366 * 15 14 5 17 17 C 1.37979 * 118.37910 * 179.72390 * 16 15 14 18 18 C 1.39576 * 119.23394 * 359.97438 * 17 16 15 19 19 C 1.48184 * 119.56020 * 179.97438 * 18 17 16 20 20 C 1.39454 * 120.13721 * 359.72214 * 19 18 17 21 21 C 1.37984 * 119.86823 * 179.74501 * 20 19 18 22 22 C 1.38348 * 120.12945 * 0.55744 * 21 20 19 23 23 C 1.38346 * 120.27017 * 359.69313 * 22 21 20 24 24 C 1.37990 * 120.13068 * 0.02947 * 23 22 21 25 25 N 1.32792 * 120.87196 * 359.97438 * 18 17 16 26 26 C 1.31489 * 121.77508 * 0.04069 * 25 18 17 27 27 N 1.31709 * 119.24298 * 180.27906 * 2 1 3 28 28 H 1.08998 * 109.46970 * 89.99271 * 1 2 3 29 29 H 1.08998 * 109.46874 * 209.99528 * 1 2 3 30 30 H 1.09004 * 109.46706 * 330.00123 * 1 2 3 31 31 H 1.08006 * 120.09219 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.79670 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00019 * 179.97438 * 9 8 6 34 34 H 1.07997 * 120.80859 * 359.73987 * 16 15 14 35 35 H 1.08000 * 120.38270 * 180.02562 * 17 16 15 36 36 H 1.08005 * 120.06406 * 359.97438 * 20 19 18 37 37 H 1.07995 * 119.93433 * 180.29413 * 21 20 19 38 38 H 1.07999 * 119.86293 * 179.72335 * 22 21 20 39 39 H 1.07998 * 119.93567 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.06692 * 180.02562 * 24 23 22 41 41 H 1.07992 * 119.66548 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2120 0.0000 4 6 3.5541 1.2256 -0.0005 5 6 4.2377 -0.0091 -0.0016 6 6 5.6454 -0.0523 -0.0027 7 1 6.1605 -0.8837 0.4551 8 6 6.3773 0.9834 -0.5976 9 7 7.6475 1.1282 -0.3222 10 14 5.5390 2.1575 -1.7843 11 1 4.9974 3.3181 -1.0326 12 1 6.5243 2.6341 -2.7880 13 1 4.4291 1.4538 -2.4756 14 6 3.4757 -1.2064 -0.0027 15 6 4.1581 -2.5160 -0.0044 16 6 3.7085 -3.5534 0.8259 17 6 4.3746 -4.7611 0.7854 18 6 5.4645 -4.9101 -0.0736 19 6 6.1854 -6.2038 -0.1225 20 6 5.7797 -7.2625 0.6895 21 6 6.4517 -8.4664 0.6357 22 6 7.5332 -8.6208 -0.2132 23 6 7.9437 -7.5726 -1.0173 24 6 7.2761 -6.3656 -0.9765 25 7 5.8640 -3.9077 -0.8477 26 6 5.2567 -2.7415 -0.8387 27 7 2.1504 -1.1492 -0.0056 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6348 2.1411 0.0004 32 1 4.0978 2.1588 -0.0010 33 1 8.1544 1.8451 -0.7344 34 1 2.8617 -3.4104 1.4806 35 1 4.0557 -5.5820 1.4106 36 1 4.9388 -7.1414 1.3564 37 1 6.1354 -9.2885 1.2606 38 1 8.0588 -9.5636 -0.2485 39 1 8.7883 -7.6991 -1.6783 40 1 7.5972 -5.5481 -1.6050 41 1 5.6101 -1.9499 -1.4827 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241791250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:18 Heat of formation + Delta-G solvation = 76.991311 kcal Electronic energy + Delta-G solvation = -24439.770807 eV Core-core repulsion = 21055.384168 eV Total energy + Delta-G solvation = -3384.386639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.97676 -38.97607 -38.13073 -34.44348 -33.21648 -32.08256 -31.84348 -31.02648 -30.63051 -28.80936 -27.92571 -24.86621 -23.56442 -23.36309 -21.87178 -21.73226 -20.91453 -20.31273 -17.71146 -17.33695 -16.15703 -16.00438 -15.80888 -15.46545 -14.78403 -14.31356 -14.16431 -13.92786 -13.74659 -13.64046 -13.39449 -13.30893 -13.11237 -12.55026 -12.44168 -12.37700 -12.14637 -11.88710 -11.67508 -11.53665 -11.22974 -11.10775 -10.92862 -10.89895 -10.44066 -10.11449 -9.63961 -9.51009 -9.19080 -8.94282 -8.85564 -8.63579 -8.36027 -8.03791 -7.44263 -7.24719 -4.73787 0.83122 1.50641 1.87454 1.90082 2.35534 2.60859 2.89774 3.02525 3.10823 3.71961 3.86917 4.27353 4.52658 4.56162 4.88856 5.01744 5.10868 5.15449 5.21442 5.32023 5.42710 5.56235 5.67024 5.72641 5.73009 5.79729 5.89558 5.97748 6.13569 6.14344 6.20655 6.24388 6.27338 6.38530 6.45363 6.51503 6.57114 6.61568 6.73418 6.76371 6.93389 7.00534 7.06758 7.23856 7.27195 7.46035 7.62287 8.00914 8.22702 8.41435 8.56394 9.23491 9.74062 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003853 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.842062 B = 7265.983325 C = 8841.338580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.111 4.111 4 C -0.206 4.206 5 C 0.062 3.938 6 C -0.421 4.421 7 H 0.102 0.898 8 C 0.083 3.917 9 N -0.780 5.780 10 Si 0.912 3.088 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.245 1.245 14 C 0.030 3.970 15 C -0.023 4.023 16 C -0.069 4.069 17 C -0.164 4.164 18 C 0.129 3.871 19 C -0.028 4.028 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.086 4.086 25 N -0.477 5.477 26 C 0.130 3.870 27 N -0.436 5.436 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.292 0.708 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -9.494 0.037 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C -0.131 4.131 4 C -0.231 4.231 5 C 0.056 3.944 6 C -0.448 4.448 7 H 0.120 0.880 8 C -0.140 4.140 9 N -0.402 5.402 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.168 1.168 14 C -0.110 4.110 15 C -0.026 4.026 16 C -0.095 4.095 17 C -0.184 4.184 18 C -0.006 4.006 19 C -0.029 4.029 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.104 4.104 25 N -0.185 5.185 26 C -0.031 4.031 27 N -0.144 5.144 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.937 -10.266 -0.523 10.460 hybrid contribution -0.386 1.737 0.228 1.794 sum -2.323 -8.529 -0.295 8.845 Atomic orbital electron populations 1.20291 0.90994 1.01161 1.00758 1.20267 0.95123 0.88180 1.11978 1.21206 0.94779 0.97689 0.99440 1.21227 0.94119 0.97644 1.10114 1.18387 0.94319 0.91027 0.90627 1.19556 0.89526 1.06167 1.29573 0.88008 1.26271 0.94812 0.96632 0.96287 1.69640 1.08836 1.27956 1.33747 0.86337 0.79794 0.80249 0.79876 1.19134 1.21157 1.16820 1.19170 0.88210 0.90707 1.12957 1.19458 0.95239 0.92565 0.95348 1.21569 0.98611 0.91945 0.97405 1.21823 0.97321 0.98343 1.00881 1.19629 0.93818 0.92386 0.94742 1.18623 0.95660 0.91602 0.97030 1.21244 1.00067 0.92660 0.98864 1.20994 0.96496 0.97224 0.99627 1.21182 0.97274 0.98811 0.96881 1.21132 1.00185 0.93365 0.99738 1.21408 0.94055 0.97469 0.97517 1.67557 1.29463 1.00189 1.21298 1.23103 0.91144 0.92964 0.95841 1.66870 1.09396 1.29410 1.08697 0.92953 0.92340 0.92681 0.87641 0.86792 0.89728 0.85122 0.85473 0.85717 0.86106 0.86383 0.86063 0.84656 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.15 36.00 0.37 -0.83 16 2 C -0.02 -0.32 6.79 -82.40 -0.56 -0.88 16 3 C -0.11 -2.28 9.64 -39.83 -0.38 -2.67 16 4 C -0.21 -4.64 7.31 -38.98 -0.29 -4.93 16 5 C 0.06 1.47 5.12 -106.41 -0.55 0.93 16 6 C -0.42 -10.38 7.22 -37.91 -0.27 -10.65 16 7 H 0.10 2.69 6.72 -52.49 -0.35 2.33 16 8 C 0.08 1.97 5.44 -17.31 -0.09 1.88 16 9 N -0.78 -19.04 13.92 55.55 0.77 -18.27 16 10 Si 0.91 19.05 24.53 -169.99 -4.17 14.88 16 11 H -0.27 -5.34 6.46 56.52 0.37 -4.98 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.24 -5.32 7.00 56.52 0.40 -4.92 16 14 C 0.03 0.70 6.44 -82.25 -0.53 0.17 16 15 C -0.02 -0.50 5.27 -104.70 -0.55 -1.05 16 16 C -0.07 -1.31 9.81 -38.91 -0.38 -1.69 16 17 C -0.16 -2.76 9.44 -39.18 -0.37 -3.13 16 18 C 0.13 2.35 6.73 -82.87 -0.56 1.79 16 19 C -0.03 -0.45 5.88 -104.90 -0.62 -1.06 16 20 C -0.11 -1.42 9.42 -39.22 -0.37 -1.79 16 21 C -0.13 -1.40 10.03 -39.63 -0.40 -1.80 16 22 C -0.12 -1.35 10.04 -39.50 -0.40 -1.75 16 23 C -0.13 -1.54 10.03 -39.63 -0.40 -1.93 16 24 C -0.09 -1.28 9.57 -39.22 -0.38 -1.65 16 25 N -0.48 -9.64 9.40 -9.42 -0.09 -9.73 16 26 C 0.13 2.76 9.06 -17.12 -0.16 2.61 16 27 N -0.44 -9.81 10.07 -5.46 -0.05 -9.86 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 32 H 0.11 2.50 4.52 -52.49 -0.24 2.26 16 33 H 0.29 6.42 8.29 -40.82 -0.34 6.08 16 34 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.13 1.70 6.17 -52.49 -0.32 1.38 16 36 H 0.13 1.39 6.17 -52.48 -0.32 1.07 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.14 2.10 7.53 -52.49 -0.40 1.70 16 41 H 0.17 3.67 6.74 -52.49 -0.35 3.32 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -27.14 342.67 -9.79 -36.94 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.54 Total: 9.32 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -6.88 Total: -28.44 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.63 Total: -37.85 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.17 Total: 14.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.14 -9.79 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241791250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.927 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds