Wall clock time and date at job start Tue Mar 31 2020 10:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38909 * 119.24466 * 2 1 4 4 C 1.36859 * 119.81449 * 180.02562 * 3 2 1 5 5 C 1.41137 * 118.39937 * 0.02562 * 4 3 2 6 6 C 1.40833 * 120.72505 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00278 * 150.63296 * 6 5 4 8 8 C 1.40079 * 119.99872 * 330.64326 * 6 5 4 9 9 N 1.30769 * 120.00056 * 163.00916 * 8 6 5 10 10 Si 1.86806 * 119.99820 * 343.00595 * 8 6 5 11 11 H 1.48501 * 109.46932 * 90.39511 * 10 8 6 12 12 H 1.48503 * 109.46995 * 210.39058 * 10 8 6 13 13 H 1.48497 * 109.47077 * 330.39072 * 10 8 6 14 14 C 1.41922 * 118.55510 * 0.02562 * 5 4 3 15 15 C 1.47670 * 120.00008 * 179.97438 * 14 5 4 16 16 C 1.40275 * 120.46919 * 136.56366 * 15 14 5 17 17 C 1.37979 * 118.37910 * 179.72390 * 16 15 14 18 18 C 1.39576 * 119.23394 * 359.97438 * 17 16 15 19 19 C 1.48184 * 119.56020 * 179.97438 * 18 17 16 20 20 C 1.39454 * 120.13721 * 359.72214 * 19 18 17 21 21 C 1.37984 * 119.86823 * 179.74501 * 20 19 18 22 22 C 1.38348 * 120.12945 * 0.55744 * 21 20 19 23 23 C 1.38346 * 120.27017 * 359.69313 * 22 21 20 24 24 C 1.37990 * 120.13068 * 0.02947 * 23 22 21 25 25 N 1.32792 * 120.87196 * 359.97438 * 18 17 16 26 26 C 1.31489 * 121.77508 * 0.04069 * 25 18 17 27 27 N 1.31709 * 119.24298 * 180.27906 * 2 1 3 28 28 H 1.08998 * 109.46970 * 89.99271 * 1 2 3 29 29 H 1.08998 * 109.46874 * 209.99528 * 1 2 3 30 30 H 1.09004 * 109.46706 * 330.00123 * 1 2 3 31 31 H 1.08006 * 120.09219 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.79670 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00019 * 179.97438 * 9 8 6 34 34 H 1.07997 * 120.80859 * 359.73987 * 16 15 14 35 35 H 1.08000 * 120.38270 * 180.02562 * 17 16 15 36 36 H 1.08005 * 120.06406 * 359.97438 * 20 19 18 37 37 H 1.07995 * 119.93433 * 180.29413 * 21 20 19 38 38 H 1.07999 * 119.86293 * 179.72335 * 22 21 20 39 39 H 1.07998 * 119.93567 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.06692 * 180.02562 * 24 23 22 41 41 H 1.07992 * 119.66548 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2120 0.0000 4 6 3.5541 1.2256 -0.0005 5 6 4.2377 -0.0091 -0.0016 6 6 5.6454 -0.0523 -0.0027 7 1 6.1605 -0.8837 0.4551 8 6 6.3773 0.9834 -0.5976 9 7 7.6475 1.1282 -0.3222 10 14 5.5390 2.1575 -1.7843 11 1 4.9974 3.3181 -1.0326 12 1 6.5243 2.6341 -2.7880 13 1 4.4291 1.4538 -2.4756 14 6 3.4757 -1.2064 -0.0027 15 6 4.1581 -2.5160 -0.0044 16 6 3.7085 -3.5534 0.8259 17 6 4.3746 -4.7611 0.7854 18 6 5.4645 -4.9101 -0.0736 19 6 6.1854 -6.2038 -0.1225 20 6 5.7797 -7.2625 0.6895 21 6 6.4517 -8.4664 0.6357 22 6 7.5332 -8.6208 -0.2132 23 6 7.9437 -7.5726 -1.0173 24 6 7.2761 -6.3656 -0.9765 25 7 5.8640 -3.9077 -0.8477 26 6 5.2567 -2.7415 -0.8387 27 7 2.1504 -1.1492 -0.0056 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6348 2.1411 0.0004 32 1 4.0978 2.1588 -0.0010 33 1 8.1544 1.8451 -0.7344 34 1 2.8617 -3.4104 1.4806 35 1 4.0557 -5.5820 1.4106 36 1 4.9388 -7.1414 1.3564 37 1 6.1354 -9.2885 1.2606 38 1 8.0588 -9.5636 -0.2485 39 1 8.7883 -7.6991 -1.6783 40 1 7.5972 -5.5481 -1.6050 41 1 5.6101 -1.9499 -1.4827 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241791250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:17 Heat of formation + Delta-G solvation = 63.538705 kcal Electronic energy + Delta-G solvation = -24440.354156 eV Core-core repulsion = 21055.384168 eV Total energy + Delta-G solvation = -3384.969988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44236 -40.45385 -39.38757 -36.17645 -34.71470 -33.64105 -33.36234 -32.40684 -31.70738 -30.18032 -29.48772 -26.40165 -24.98947 -24.80355 -23.37106 -22.96970 -22.31839 -21.79915 -19.49108 -18.53358 -17.74270 -17.58613 -17.02646 -16.89521 -16.37536 -15.59041 -15.42621 -15.34419 -15.27273 -15.10255 -14.86412 -14.69687 -14.24252 -14.09002 -13.88403 -13.77489 -13.53040 -13.41612 -13.04833 -13.02070 -12.75440 -12.56373 -12.12223 -12.11681 -11.92840 -11.82653 -11.37971 -10.96824 -10.60683 -10.43481 -10.28093 -10.04183 -9.82868 -9.59086 -9.03124 -8.92223 -6.56396 -0.48034 0.38166 0.43115 0.53356 0.69285 1.05767 1.18982 1.34126 1.41809 2.00873 2.51619 2.71303 3.15032 3.20985 3.41724 3.60786 3.73491 4.04258 4.09241 4.14907 4.16111 4.19215 4.23824 4.35167 4.44405 4.54088 4.65542 4.67449 4.73704 4.79307 4.83814 4.92444 4.97346 5.02066 5.11673 5.18709 5.22824 5.31333 5.39006 5.52125 5.56738 5.60980 5.64072 5.71571 5.84655 5.91831 6.10724 6.17038 6.48190 6.59118 7.04832 7.51781 8.02786 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003853 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.842062 B = 7265.983325 C = 8841.338580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 C -0.115 4.115 4 C -0.216 4.216 5 C 0.043 3.957 6 C -0.446 4.446 7 H 0.065 0.935 8 C 0.053 3.947 9 N -0.824 5.824 10 Si 0.960 3.040 11 H -0.247 1.247 12 H -0.273 1.273 13 H -0.261 1.261 14 C 0.021 3.979 15 C -0.055 4.055 16 C -0.067 4.067 17 C -0.156 4.156 18 C 0.130 3.870 19 C -0.063 4.063 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.108 4.108 25 N -0.499 5.499 26 C 0.116 3.884 27 N -0.453 5.453 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.299 0.701 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -11.473 0.815 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C -0.135 4.135 4 C -0.242 4.242 5 C 0.038 3.962 6 C -0.474 4.474 7 H 0.083 0.917 8 C -0.165 4.165 9 N -0.447 5.447 10 Si 0.783 3.217 11 H -0.171 1.171 12 H -0.199 1.199 13 H -0.185 1.185 14 C -0.118 4.118 15 C -0.058 4.058 16 C -0.093 4.093 17 C -0.175 4.175 18 C -0.006 4.006 19 C -0.064 4.064 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.127 4.127 25 N -0.207 5.207 26 C -0.043 4.043 27 N -0.162 5.162 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.162 0.838 35 H 0.188 0.812 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.131 0.869 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.140 -12.237 0.258 12.921 hybrid contribution 0.188 2.052 0.030 2.061 sum -3.951 -10.185 0.288 10.929 Atomic orbital electron populations 1.20409 0.87308 1.02953 1.02282 1.21237 0.97630 0.87768 1.08516 1.21646 0.94089 0.99506 0.98242 1.21438 0.95381 0.97190 1.10174 1.18566 0.94134 0.92248 0.91241 1.19314 0.90161 1.06045 1.31910 0.91657 1.26835 0.95137 0.97568 0.96997 1.69663 1.09922 1.29495 1.35668 0.85609 0.78688 0.78971 0.78414 1.17146 1.19909 1.18472 1.19470 0.88765 0.91291 1.12247 1.19516 0.96002 0.93133 0.97113 1.21757 0.98871 0.91918 0.96764 1.22196 0.96166 0.98685 1.00494 1.20261 0.93972 0.92801 0.93572 1.18710 0.96836 0.91390 0.99485 1.21514 1.00616 0.92406 0.98158 1.21453 0.95751 0.97300 0.99420 1.21660 0.96727 0.99486 0.95109 1.21399 1.00465 0.92612 1.00358 1.21413 0.94965 0.98337 0.97979 1.67537 1.30029 1.00455 1.22704 1.22791 0.91810 0.93177 0.96482 1.67012 1.08901 1.30491 1.09784 0.91410 0.91850 0.89669 0.83606 0.86378 0.88962 0.83849 0.81211 0.83766 0.82463 0.82811 0.84042 0.86940 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.06 10.15 71.23 0.72 -1.34 16 2 C -0.01 -0.42 6.79 42.74 0.29 -0.13 16 3 C -0.12 -4.50 9.64 22.11 0.21 -4.29 16 4 C -0.22 -9.78 7.31 22.66 0.17 -9.61 16 5 C 0.04 2.15 5.12 -21.02 -0.11 2.04 16 6 C -0.45 -23.81 7.22 23.35 0.17 -23.64 16 7 H 0.07 3.85 6.72 -2.91 -0.02 3.83 16 8 C 0.05 2.68 5.44 85.30 0.46 3.15 16 9 N -0.82 -42.89 13.92 21.85 0.30 -42.58 16 10 Si 0.96 40.32 24.53 68.60 1.68 42.00 16 11 H -0.25 -9.50 6.46 99.48 0.64 -8.86 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 13 H -0.26 -11.46 7.00 99.48 0.70 -10.76 16 14 C 0.02 1.03 6.44 42.43 0.27 1.30 16 15 C -0.05 -2.50 5.27 -19.92 -0.10 -2.60 16 16 C -0.07 -2.57 9.81 22.70 0.22 -2.35 16 17 C -0.16 -5.19 9.44 22.53 0.21 -4.98 16 18 C 0.13 4.84 6.73 41.97 0.28 5.12 16 19 C -0.06 -1.98 5.88 -20.05 -0.12 -2.10 16 20 C -0.11 -2.52 9.42 22.50 0.21 -2.31 16 21 C -0.12 -2.20 10.03 22.24 0.22 -1.98 16 22 C -0.11 -2.02 10.04 22.32 0.22 -1.79 16 23 C -0.13 -2.97 10.03 22.24 0.22 -2.74 16 24 C -0.11 -3.28 9.57 22.51 0.22 -3.06 16 25 N -0.50 -21.77 9.40 -183.70 -1.73 -23.49 16 26 C 0.12 5.45 9.06 85.12 0.77 6.22 16 27 N -0.45 -20.34 10.07 -171.18 -1.72 -22.07 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.95 8.07 -2.38 -0.02 1.93 16 31 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.12 5.15 4.52 -2.91 -0.01 5.13 16 33 H 0.30 13.93 8.29 -92.71 -0.77 13.16 16 34 H 0.14 5.02 8.06 -2.91 -0.02 4.99 16 35 H 0.17 4.05 6.17 -2.91 -0.02 4.03 16 36 H 0.14 2.67 6.17 -2.91 -0.02 2.65 16 37 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.11 3.81 7.53 -2.91 -0.02 3.79 16 41 H 0.14 7.20 6.74 -2.91 -0.02 7.18 16 Total: -1.00 -64.45 342.67 4.08 -60.37 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.99 Total: 30.86 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 4.55 Total: -45.09 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -3.15 Total: -88.14 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.68 Total: 42.00 kcal Total: -64.45 4.08 -60.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241791250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.909 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds