Wall clock time and date at job start Tue Mar 31 2020 10:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38911 * 119.24129 * 2 1 4 4 C 1.36855 * 119.81457 * 179.97438 * 3 2 1 5 5 C 1.41138 * 118.39941 * 359.74600 * 4 3 2 6 6 C 1.40831 * 120.72513 * 180.24719 * 5 4 3 7 7 H 1.07997 * 119.99793 * 150.75253 * 6 5 4 8 8 C 1.40069 * 119.99719 * 330.75410 * 6 5 4 9 9 N 1.30777 * 119.99788 * 162.88418 * 8 6 5 10 10 Si 1.86801 * 120.00236 * 342.88580 * 8 6 5 11 11 H 1.48493 * 109.47286 * 90.53124 * 10 8 6 12 12 H 1.48504 * 109.46911 * 210.52957 * 10 8 6 13 13 H 1.48494 * 109.47160 * 330.52752 * 10 8 6 14 14 C 1.41930 * 118.55210 * 0.47181 * 5 4 3 15 15 C 1.47659 * 119.99688 * 179.79562 * 14 5 4 16 16 C 1.39825 * 120.03257 * 316.51950 * 15 14 5 17 17 C 1.37604 * 119.97079 * 180.02562 * 16 15 14 18 18 C 1.39574 * 120.02799 * 359.97438 * 17 16 15 19 19 C 1.48232 * 119.96756 * 180.02562 * 18 17 16 20 20 C 1.39868 * 120.54624 * 179.97438 * 19 18 17 21 21 C 1.38387 * 118.30648 * 180.02562 * 20 19 18 22 22 C 1.38336 * 119.29031 * 359.97438 * 21 20 19 23 23 N 1.31904 * 121.05015 * 0.02562 * 22 21 20 24 24 C 1.31727 * 121.85976 * 359.65569 * 23 22 21 25 25 C 1.39573 * 120.06183 * 0.02562 * 18 17 16 26 26 C 1.37601 * 120.03057 * 359.97438 * 25 18 17 27 27 N 1.31701 * 119.24442 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47103 * 270.02259 * 1 2 3 29 29 H 1.08996 * 109.47289 * 30.02520 * 1 2 3 30 30 H 1.09003 * 109.46871 * 150.02176 * 1 2 3 31 31 H 1.08004 * 120.09310 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.79560 * 180.02562 * 4 3 2 33 33 H 0.97004 * 119.99728 * 180.02562 * 9 8 6 34 34 H 1.07996 * 120.01858 * 0.04166 * 16 15 14 35 35 H 1.07999 * 119.98673 * 180.25169 * 17 16 15 36 36 H 1.08000 * 120.84176 * 359.97438 * 20 19 18 37 37 H 1.07994 * 120.35387 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.47305 * 179.97438 * 22 21 20 39 39 H 1.08010 * 119.70836 * 180.31420 * 24 23 22 40 40 H 1.07999 * 119.98228 * 179.97438 * 25 18 17 41 41 H 1.08001 * 120.01191 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2121 0.0000 4 6 3.5540 1.2258 0.0005 5 6 4.2377 -0.0089 0.0066 6 6 5.6453 -0.0520 0.0126 7 1 6.1582 -0.8830 0.4739 8 6 6.3802 0.9830 -0.5796 9 7 7.6484 1.1297 -0.2961 10 14 5.5487 2.1538 -1.7744 11 1 5.0039 3.3170 -1.0293 12 1 6.5394 2.6265 -2.7745 13 1 4.4419 1.4485 -2.4691 14 6 3.4757 -1.2063 0.0015 15 6 4.1581 -2.5157 0.0031 16 6 5.2644 -2.7293 -0.8251 17 6 5.8991 -3.9502 -0.8230 18 6 5.4394 -4.9750 0.0056 19 6 6.1245 -6.2895 0.0072 20 6 5.6745 -7.3247 0.8331 21 6 6.3489 -8.5326 0.7979 22 6 7.4360 -8.6764 -0.0455 23 7 7.8376 -7.6820 -0.8133 24 6 7.2242 -6.5163 -0.8190 25 6 4.3353 -4.7632 0.8328 26 6 3.6987 -3.5433 0.8327 27 7 2.1504 -1.1491 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6347 2.1411 -0.0004 32 1 4.0977 2.1590 0.0010 33 1 8.1572 1.8468 -0.7059 34 1 5.6207 -1.9363 -1.4658 35 1 6.7560 -4.1141 -1.4595 36 1 4.8229 -7.1845 1.4823 37 1 6.0294 -9.3543 1.4214 38 1 7.9647 -9.6177 -0.0750 39 1 7.5796 -5.7275 -1.4655 40 1 3.9805 -5.5572 1.4731 41 1 2.8442 -3.3798 1.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241844978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:43 Heat of formation + Delta-G solvation = 77.195107 kcal Electronic energy + Delta-G solvation = -24403.848566 eV Core-core repulsion = 21019.470765 eV Total energy + Delta-G solvation = -3384.377802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.21197 -39.20736 -37.89049 -34.42996 -33.47629 -32.22311 -31.85918 -31.12275 -30.42245 -28.62322 -27.91845 -24.82922 -23.92907 -23.48105 -22.11059 -21.51874 -20.87753 -20.07464 -17.70018 -17.50451 -16.22518 -16.12855 -16.00051 -15.63492 -14.87184 -14.16304 -14.00551 -13.94441 -13.92902 -13.67708 -13.48026 -13.29816 -13.18676 -12.60512 -12.49179 -12.32686 -12.09574 -11.90518 -11.71026 -11.63900 -11.31152 -11.00398 -10.92873 -10.47056 -10.37765 -10.10398 -9.92451 -9.61951 -9.43957 -9.40931 -8.65181 -8.40783 -8.31729 -8.02458 -7.35249 -7.23116 -4.70309 0.70810 1.25574 1.87909 2.01872 2.37674 2.63660 2.90547 3.02608 3.11446 3.73024 3.84616 4.27860 4.41983 4.46781 4.78043 4.82752 4.93064 5.04424 5.14398 5.25158 5.36538 5.38934 5.58427 5.74228 5.75876 5.84622 5.94672 6.02115 6.05136 6.08679 6.20442 6.22524 6.29276 6.35428 6.46939 6.50353 6.61682 6.67289 6.75579 6.85406 7.00913 7.09697 7.16878 7.33252 7.42827 7.57957 7.66719 7.98340 8.04244 8.27123 8.44731 9.27427 9.75517 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.003783 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.586860 B = 7400.098766 C = 8973.550407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 C -0.113 4.113 4 C -0.208 4.208 5 C 0.061 3.939 6 C -0.419 4.419 7 H 0.104 0.896 8 C 0.083 3.917 9 N -0.784 5.784 10 Si 0.910 3.090 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.246 1.246 14 C 0.029 3.971 15 C 0.032 3.968 16 C -0.089 4.089 17 C -0.108 4.108 18 C -0.078 4.078 19 C -0.069 4.069 20 C -0.080 4.080 21 C -0.169 4.169 22 C 0.080 3.920 23 N -0.482 5.482 24 C 0.098 3.902 25 C -0.110 4.110 26 C -0.108 4.108 27 N -0.436 5.436 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.291 0.709 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.116 0.884 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -9.374 0.319 9.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.156 4.156 3 C -0.133 4.133 4 C -0.233 4.233 5 C 0.055 3.945 6 C -0.447 4.447 7 H 0.122 0.878 8 C -0.140 4.140 9 N -0.406 5.406 10 Si 0.736 3.264 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.169 1.169 14 C -0.111 4.111 15 C 0.031 3.969 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.079 4.079 19 C -0.071 4.071 20 C -0.105 4.105 21 C -0.189 4.189 22 C -0.077 4.077 23 N -0.190 5.190 24 C -0.059 4.059 25 C -0.128 4.128 26 C -0.127 4.127 27 N -0.144 5.144 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.133 0.867 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.474 -10.155 -0.229 10.454 hybrid contribution -0.396 1.693 0.257 1.757 sum -2.870 -8.462 0.028 8.935 Atomic orbital electron populations 1.20289 0.91054 1.01161 1.00696 1.20268 0.95112 0.88229 1.12016 1.21194 0.94789 0.97666 0.99617 1.21220 0.94128 0.97668 1.10281 1.18411 0.94393 0.91035 0.90625 1.19561 0.89519 1.06146 1.29444 0.87781 1.26260 0.94802 0.96576 0.96333 1.69649 1.08831 1.28074 1.34043 0.86357 0.79728 0.80323 0.79960 1.19191 1.21258 1.16891 1.19413 0.88186 0.91235 1.12312 1.18516 0.93319 0.91392 0.93641 1.21389 0.94732 0.96360 0.98295 1.21017 0.99801 0.92796 0.98993 1.18492 0.97289 0.92002 1.00141 1.19917 0.96280 0.94066 0.96828 1.21703 0.99131 0.92308 0.97374 1.22043 0.97626 0.98298 1.00890 1.22719 0.94634 0.97637 0.92703 1.67624 1.29806 1.00606 1.20954 1.22978 0.91807 0.94438 0.96673 1.20922 0.95695 0.97169 0.99054 1.21145 0.99794 0.92464 0.99272 1.66891 1.09490 1.29306 1.08738 0.92947 0.92786 0.92324 0.87740 0.86897 0.89831 0.84440 0.86211 0.84668 0.84959 0.83126 0.82420 0.86659 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.15 36.01 0.37 -0.85 16 2 C -0.02 -0.34 6.79 -82.40 -0.56 -0.90 16 3 C -0.11 -2.34 9.64 -39.83 -0.38 -2.73 16 4 C -0.21 -4.73 7.31 -38.98 -0.29 -5.02 16 5 C 0.06 1.45 5.12 -106.40 -0.54 0.91 16 6 C -0.42 -10.26 7.18 -37.92 -0.27 -10.53 16 7 H 0.10 2.69 6.71 -52.49 -0.35 2.34 16 8 C 0.08 1.96 5.44 -17.31 -0.09 1.86 16 9 N -0.78 -18.96 13.93 55.55 0.77 -18.19 16 10 Si 0.91 19.07 24.53 -169.99 -4.17 14.90 16 11 H -0.27 -5.40 6.47 56.52 0.37 -5.03 16 12 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.25 -5.36 6.99 56.52 0.40 -4.97 16 14 C 0.03 0.66 6.43 -82.26 -0.53 0.13 16 15 C 0.03 0.67 5.27 -104.86 -0.55 0.12 16 16 C -0.09 -1.75 7.84 -39.22 -0.31 -2.06 16 17 C -0.11 -1.83 9.42 -39.31 -0.37 -2.20 16 18 C -0.08 -1.25 5.88 -104.79 -0.62 -1.87 16 19 C -0.07 -0.98 5.89 -104.75 -0.62 -1.60 16 20 C -0.08 -0.96 9.53 -38.92 -0.37 -1.33 16 21 C -0.17 -1.76 10.10 -39.49 -0.40 -2.16 16 22 C 0.08 0.91 11.17 -17.48 -0.20 0.71 16 23 N -0.48 -6.74 10.35 -12.94 -0.13 -6.87 16 24 C 0.10 1.39 10.60 -17.16 -0.18 1.21 16 25 C -0.11 -1.76 9.42 -39.32 -0.37 -2.13 16 26 C -0.11 -2.00 9.64 -39.22 -0.38 -2.37 16 27 N -0.44 -9.87 10.04 -5.46 -0.05 -9.93 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 32 H 0.11 2.50 4.52 -52.48 -0.24 2.27 16 33 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 34 H 0.14 2.83 6.71 -52.49 -0.35 2.48 16 35 H 0.12 1.74 6.22 -52.49 -0.33 1.41 16 36 H 0.14 1.38 6.31 -52.49 -0.33 1.05 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.16 2.02 6.21 -52.48 -0.33 1.70 16 40 H 0.12 1.49 6.25 -52.49 -0.33 1.17 16 41 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -27.43 340.07 -9.51 -36.94 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.39 Total: 8.82 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -6.66 Total: -30.80 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.58 Total: -34.98 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.17 Total: 14.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.43 -9.51 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241844978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.135 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds