Wall clock time and date at job start Tue Mar 31 2020 10:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38911 * 119.24129 * 2 1 4 4 C 1.36855 * 119.81457 * 179.97438 * 3 2 1 5 5 C 1.41138 * 118.39941 * 359.74600 * 4 3 2 6 6 C 1.40831 * 120.72513 * 180.24719 * 5 4 3 7 7 H 1.07997 * 119.99793 * 150.75253 * 6 5 4 8 8 C 1.40069 * 119.99719 * 330.75410 * 6 5 4 9 9 N 1.30777 * 119.99788 * 162.88418 * 8 6 5 10 10 Si 1.86801 * 120.00236 * 342.88580 * 8 6 5 11 11 H 1.48493 * 109.47286 * 90.53124 * 10 8 6 12 12 H 1.48504 * 109.46911 * 210.52957 * 10 8 6 13 13 H 1.48494 * 109.47160 * 330.52752 * 10 8 6 14 14 C 1.41930 * 118.55210 * 0.47181 * 5 4 3 15 15 C 1.47659 * 119.99688 * 179.79562 * 14 5 4 16 16 C 1.39825 * 120.03257 * 316.51950 * 15 14 5 17 17 C 1.37604 * 119.97079 * 180.02562 * 16 15 14 18 18 C 1.39574 * 120.02799 * 359.97438 * 17 16 15 19 19 C 1.48232 * 119.96756 * 180.02562 * 18 17 16 20 20 C 1.39868 * 120.54624 * 179.97438 * 19 18 17 21 21 C 1.38387 * 118.30648 * 180.02562 * 20 19 18 22 22 C 1.38336 * 119.29031 * 359.97438 * 21 20 19 23 23 N 1.31904 * 121.05015 * 0.02562 * 22 21 20 24 24 C 1.31727 * 121.85976 * 359.65569 * 23 22 21 25 25 C 1.39573 * 120.06183 * 0.02562 * 18 17 16 26 26 C 1.37601 * 120.03057 * 359.97438 * 25 18 17 27 27 N 1.31701 * 119.24442 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47103 * 270.02259 * 1 2 3 29 29 H 1.08996 * 109.47289 * 30.02520 * 1 2 3 30 30 H 1.09003 * 109.46871 * 150.02176 * 1 2 3 31 31 H 1.08004 * 120.09310 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.79560 * 180.02562 * 4 3 2 33 33 H 0.97004 * 119.99728 * 180.02562 * 9 8 6 34 34 H 1.07996 * 120.01858 * 0.04166 * 16 15 14 35 35 H 1.07999 * 119.98673 * 180.25169 * 17 16 15 36 36 H 1.08000 * 120.84176 * 359.97438 * 20 19 18 37 37 H 1.07994 * 120.35387 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.47305 * 179.97438 * 22 21 20 39 39 H 1.08010 * 119.70836 * 180.31420 * 24 23 22 40 40 H 1.07999 * 119.98228 * 179.97438 * 25 18 17 41 41 H 1.08001 * 120.01191 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2121 0.0000 4 6 3.5540 1.2258 0.0005 5 6 4.2377 -0.0089 0.0066 6 6 5.6453 -0.0520 0.0126 7 1 6.1582 -0.8830 0.4739 8 6 6.3802 0.9830 -0.5796 9 7 7.6484 1.1297 -0.2961 10 14 5.5487 2.1538 -1.7744 11 1 5.0039 3.3170 -1.0293 12 1 6.5394 2.6265 -2.7745 13 1 4.4419 1.4485 -2.4691 14 6 3.4757 -1.2063 0.0015 15 6 4.1581 -2.5157 0.0031 16 6 5.2644 -2.7293 -0.8251 17 6 5.8991 -3.9502 -0.8230 18 6 5.4394 -4.9750 0.0056 19 6 6.1245 -6.2895 0.0072 20 6 5.6745 -7.3247 0.8331 21 6 6.3489 -8.5326 0.7979 22 6 7.4360 -8.6764 -0.0455 23 7 7.8376 -7.6820 -0.8133 24 6 7.2242 -6.5163 -0.8190 25 6 4.3353 -4.7632 0.8328 26 6 3.6987 -3.5433 0.8327 27 7 2.1504 -1.1491 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6347 2.1411 -0.0004 32 1 4.0977 2.1590 0.0010 33 1 8.1572 1.8468 -0.7059 34 1 5.6207 -1.9363 -1.4658 35 1 6.7560 -4.1141 -1.4595 36 1 4.8229 -7.1845 1.4823 37 1 6.0294 -9.3543 1.4214 38 1 7.9647 -9.6177 -0.0750 39 1 7.5796 -5.7275 -1.4655 40 1 3.9805 -5.5572 1.4731 41 1 2.8442 -3.3798 1.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241844978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:42 Heat of formation + Delta-G solvation = 63.546899 kcal Electronic energy + Delta-G solvation = -24404.440397 eV Core-core repulsion = 21019.470765 eV Total energy + Delta-G solvation = -3384.969633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.31024 -40.75290 -39.29094 -36.14464 -34.80606 -33.57164 -33.26787 -32.48745 -31.78277 -29.96696 -29.46004 -26.30280 -25.02386 -24.88217 -23.56920 -22.92806 -22.32332 -21.53050 -19.44880 -18.62468 -17.66875 -17.41658 -17.24730 -16.97602 -16.44761 -15.57931 -15.44690 -15.35210 -15.09598 -14.96092 -14.85728 -14.72427 -14.48237 -14.05621 -13.77209 -13.76197 -13.58539 -13.40969 -13.03839 -12.96512 -12.76675 -12.56056 -12.41906 -12.00736 -11.87063 -11.73193 -11.35928 -11.11923 -10.50709 -10.39386 -10.27147 -10.01597 -9.81138 -9.59946 -8.99995 -8.79764 -6.51209 -0.45646 0.31461 0.41960 0.60044 0.70683 1.11356 1.19755 1.34479 1.41801 2.02219 2.53736 2.74925 3.13262 3.44992 3.45387 3.63913 3.77679 3.84403 3.99817 4.05875 4.15483 4.17853 4.21839 4.33825 4.49444 4.54103 4.63045 4.68684 4.76765 4.80359 4.83313 4.93721 4.97560 5.04913 5.15951 5.17567 5.22520 5.22635 5.31061 5.53168 5.53627 5.65833 5.68303 5.80451 5.90661 5.95564 6.09736 6.22541 6.53475 6.63848 7.02557 7.56174 8.04699 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.003783 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.586860 B = 7400.098766 C = 8973.550407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.015 4.015 3 C -0.119 4.119 4 C -0.221 4.221 5 C 0.040 3.960 6 C -0.442 4.442 7 H 0.073 0.927 8 C 0.055 3.945 9 N -0.823 5.823 10 Si 0.957 3.043 11 H -0.251 1.251 12 H -0.273 1.273 13 H -0.263 1.263 14 C 0.020 3.980 15 C -0.006 4.006 16 C -0.101 4.101 17 C -0.116 4.116 18 C -0.063 4.063 19 C -0.094 4.094 20 C -0.078 4.078 21 C -0.159 4.159 22 C 0.080 3.920 23 N -0.508 5.508 24 C 0.086 3.914 25 C -0.106 4.106 26 C -0.111 4.111 27 N -0.456 5.456 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.298 0.702 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -11.303 0.974 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.246 4.246 5 C 0.035 3.965 6 C -0.471 4.471 7 H 0.091 0.909 8 C -0.163 4.163 9 N -0.448 5.448 10 Si 0.781 3.219 11 H -0.176 1.176 12 H -0.199 1.199 13 H -0.187 1.187 14 C -0.119 4.119 15 C -0.007 4.007 16 C -0.121 4.121 17 C -0.133 4.133 18 C -0.064 4.064 19 C -0.096 4.096 20 C -0.103 4.103 21 C -0.178 4.178 22 C -0.076 4.076 23 N -0.217 5.217 24 C -0.071 4.071 25 C -0.123 4.123 26 C -0.130 4.130 27 N -0.164 5.164 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.190 0.810 38 H 0.200 0.800 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.354 -12.079 0.429 12.847 hybrid contribution 0.082 1.983 0.111 1.987 sum -4.273 -10.097 0.541 10.977 Atomic orbital electron populations 1.20394 0.87452 1.02715 1.02327 1.21217 0.97601 0.87854 1.08825 1.21610 0.94170 0.99408 0.98688 1.21425 0.95359 0.97287 1.10568 1.18616 0.94368 0.92175 0.91359 1.19345 0.90018 1.06137 1.31559 0.90862 1.26758 0.95107 0.97438 0.97033 1.69664 1.09776 1.29514 1.35804 0.85654 0.78648 0.79054 0.78579 1.17631 1.19882 1.18734 1.19833 0.88692 0.92139 1.11201 1.18632 0.94571 0.91647 0.95873 1.21256 0.95198 0.96932 0.98665 1.21214 1.00172 0.92239 0.99716 1.18733 0.96680 0.92545 0.98484 1.19845 0.97122 0.93810 0.98822 1.22048 0.99549 0.92138 0.96569 1.22459 0.96416 0.98633 1.00332 1.23394 0.94761 0.97983 0.91503 1.67659 1.30574 1.01080 1.22363 1.23029 0.92117 0.94913 0.96992 1.21249 0.95031 0.97033 0.99026 1.21217 1.00038 0.92875 0.98883 1.67044 1.09182 1.30313 1.09879 0.91131 0.89986 0.92065 0.83939 0.86621 0.89061 0.86771 0.84571 0.82530 0.80974 0.79969 0.82627 0.82894 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.11 10.15 71.24 0.72 -1.38 16 2 C -0.01 -0.59 6.79 42.74 0.29 -0.30 16 3 C -0.12 -4.78 9.64 22.11 0.21 -4.57 16 4 C -0.22 -10.15 7.31 22.66 0.17 -9.99 16 5 C 0.04 1.99 5.12 -21.02 -0.11 1.88 16 6 C -0.44 -23.24 7.18 23.35 0.17 -23.08 16 7 H 0.07 4.17 6.71 -2.91 -0.02 4.15 16 8 C 0.05 2.74 5.44 85.29 0.46 3.20 16 9 N -0.82 -42.03 13.93 21.85 0.30 -41.73 16 10 Si 0.96 40.29 24.53 68.60 1.68 41.98 16 11 H -0.25 -9.86 6.47 99.48 0.64 -9.22 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 13 H -0.26 -11.68 6.99 99.48 0.70 -10.99 16 14 C 0.02 0.98 6.43 42.42 0.27 1.26 16 15 C -0.01 -0.28 5.27 -20.02 -0.11 -0.39 16 16 C -0.10 -4.31 7.84 22.50 0.18 -4.13 16 17 C -0.12 -4.11 9.42 22.44 0.21 -3.90 16 18 C -0.06 -2.01 5.88 -19.98 -0.12 -2.13 16 19 C -0.09 -2.54 5.89 -19.95 -0.12 -2.65 16 20 C -0.08 -1.61 9.53 22.70 0.22 -1.39 16 21 C -0.16 -2.63 10.10 22.33 0.23 -2.40 16 22 C 0.08 1.55 11.17 84.71 0.95 2.50 16 23 N -0.51 -13.40 10.35 -194.85 -2.02 -15.41 16 24 C 0.09 2.37 10.60 84.99 0.90 3.28 16 25 C -0.11 -3.27 9.42 22.44 0.21 -3.05 16 26 C -0.11 -4.18 9.64 22.50 0.22 -3.96 16 27 N -0.46 -20.74 10.04 -171.19 -1.72 -22.46 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.97 8.07 -2.39 -0.02 1.95 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.12 5.14 4.52 -2.91 -0.01 5.13 16 33 H 0.30 13.65 8.30 -92.71 -0.77 12.88 16 34 H 0.11 5.25 6.71 -2.91 -0.02 5.23 16 35 H 0.14 4.22 6.22 -2.91 -0.02 4.20 16 36 H 0.16 2.49 6.31 -2.91 -0.02 2.47 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.16 4.11 6.21 -2.91 -0.02 4.09 16 40 H 0.15 3.47 6.25 -2.91 -0.02 3.45 16 41 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -63.47 340.07 4.20 -59.27 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 1.00 Total: 29.57 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 4.95 Total: -51.21 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.43 Total: -79.60 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.68 Total: 41.98 kcal Total: -63.47 4.20 -59.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241844978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.814 kcal (2) G-P(sol) polarization free energy of solvation -63.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds