Wall clock time and date at job start Tue Mar 31 2020 10:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31235 * 119.79638 * 2 1 4 4 C 1.33069 * 121.72349 * 180.26732 * 3 2 1 5 5 C 1.47836 * 119.45600 * 179.74698 * 4 3 2 6 6 C 1.39743 * 120.02404 * 359.72658 * 5 4 3 7 7 C 1.37631 * 119.97846 * 179.97438 * 6 5 4 8 8 C 1.39559 * 120.02258 * 359.97438 * 7 6 5 9 9 C 1.48221 * 119.97731 * 179.97438 * 8 7 6 10 10 C 1.39418 * 119.73205 * 179.97438 * 9 8 7 11 11 C 1.38386 * 119.06105 * 179.97438 * 10 9 8 12 12 C 1.38791 * 118.51840 * 0.02562 * 11 10 9 13 13 C 1.38297 * 119.37506 * 0.24828 * 12 11 10 14 14 N 1.31732 * 120.89702 * 359.45693 * 13 12 11 15 15 C 1.39564 * 120.04368 * 0.25393 * 8 7 6 16 16 C 1.37631 * 120.02156 * 359.49195 * 15 8 7 17 17 C 1.39956 * 121.08837 * 359.47027 * 4 3 2 18 18 C 1.36580 * 119.46524 * 0.25212 * 17 4 3 19 19 C 1.40979 * 119.79850 * 179.73964 * 2 1 3 20 20 C 1.41004 * 120.54949 * 0.02756 * 19 2 1 21 21 H 1.08004 * 119.99616 * 334.60727 * 20 19 2 22 22 C 1.40036 * 120.00320 * 154.61396 * 20 19 2 23 23 N 1.30788 * 119.99554 * 343.65228 * 22 20 19 24 24 Si 1.86795 * 120.00345 * 163.65518 * 22 20 19 25 25 H 1.48501 * 109.47267 * 59.99963 * 24 22 20 26 26 H 1.48507 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47164 * 299.99705 * 24 22 20 28 28 H 1.08995 * 109.47157 * 270.26059 * 1 2 3 29 29 H 1.09002 * 109.47190 * 30.25539 * 1 2 3 30 30 H 1.08995 * 109.47038 * 150.25672 * 1 2 3 31 31 H 1.08006 * 120.00866 * 359.96029 * 6 5 4 32 32 H 1.08007 * 119.98489 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.46554 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.73875 * 180.02562 * 11 10 9 35 35 H 1.07995 * 120.31491 * 179.97438 * 12 11 10 36 36 H 1.07994 * 119.55074 * 179.74779 * 13 12 11 37 37 H 1.08008 * 119.99090 * 179.72379 * 15 8 7 38 38 H 1.07997 * 120.01030 * 180.25359 * 16 15 8 39 39 H 1.08002 * 120.26933 * 180.28148 * 17 4 3 40 40 H 1.08001 * 120.78814 * 179.97438 * 18 17 4 41 41 H 0.97003 * 120.00077 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1388 0.0000 4 6 3.4891 1.1836 -0.0053 5 6 4.1723 2.4946 -0.0107 6 6 3.4226 3.6738 -0.0160 7 6 4.0596 4.8938 -0.0205 8 6 5.4539 4.9535 -0.0192 9 6 6.1390 6.2678 -0.0247 10 6 7.5322 6.3215 -0.0228 11 6 8.1573 7.5560 -0.0285 12 6 7.3687 8.6981 -0.0353 13 6 5.9916 8.5716 -0.0310 14 7 5.4214 7.3841 -0.0312 15 6 6.2037 3.7763 -0.0187 16 6 5.5685 2.5553 -0.0089 17 6 4.2517 0.0101 0.0000 18 6 3.6206 -1.2012 0.0055 19 6 2.2076 -1.2234 0.0056 20 6 1.5100 -2.4487 0.0105 21 1 0.5084 -2.4982 0.4114 22 6 2.1159 -3.6016 -0.5042 23 7 3.1727 -3.4994 -1.2680 24 14 1.4149 -5.2851 -0.0999 25 1 0.0144 -5.3681 -0.5868 26 1 2.2318 -6.3336 -0.7625 27 1 1.4410 -5.4922 1.3703 28 1 -0.3633 0.0047 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5098 31 1 2.3435 3.6279 -0.0168 32 1 3.4803 5.8053 -0.0242 33 1 8.1151 5.4124 -0.0170 34 1 9.2349 7.6292 -0.0276 35 1 7.8262 9.6764 -0.0394 36 1 5.3753 9.4584 -0.0321 37 1 7.2827 3.8234 -0.0222 38 1 6.1489 1.6446 -0.0044 39 1 5.3304 0.0618 0.0002 40 1 4.1881 -2.1201 0.0092 41 1 3.5922 -4.2978 -1.6248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241974738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:40 Heat of formation + Delta-G solvation = 74.689463 kcal Electronic energy + Delta-G solvation = -23676.555461 eV Core-core repulsion = 20292.069007 eV Total energy + Delta-G solvation = -3384.486455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.25887 -39.00098 -37.82227 -34.44299 -33.05852 -32.53800 -31.65122 -30.83256 -30.35589 -28.86746 -27.03832 -25.43211 -23.85567 -23.53360 -21.87743 -21.82323 -20.40553 -19.88411 -17.55969 -17.49483 -16.32895 -15.98829 -15.91037 -15.49615 -14.83716 -14.35131 -14.10727 -14.09921 -13.69305 -13.50641 -13.28229 -13.21970 -12.92415 -12.66710 -12.31676 -12.15542 -11.75430 -11.72106 -11.67819 -11.36515 -11.24937 -11.00040 -10.86125 -10.66940 -10.54890 -10.02597 -9.88759 -9.67340 -9.44837 -9.44324 -8.49984 -8.41960 -8.18967 -8.12046 -7.24470 -7.01361 -4.60885 0.63304 1.19796 1.77952 1.94347 2.63100 2.87433 2.90314 2.92454 3.10623 3.67773 3.79649 4.20918 4.27720 4.62717 4.64716 4.73797 4.96190 5.03254 5.21688 5.37755 5.42948 5.50038 5.52469 5.67381 5.83568 5.92758 5.96278 6.06013 6.11603 6.25674 6.32470 6.48129 6.51068 6.58251 6.59879 6.67556 6.75610 6.77504 6.90323 6.94664 7.01335 7.20304 7.27199 7.41600 7.63176 7.72143 7.82428 7.97847 8.23721 8.43395 8.54873 9.51621 9.80667 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.035428 B = 0.002373 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.148391 B =11797.970439 C =12506.979221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.010 3.990 3 N -0.443 5.443 4 C -0.011 4.011 5 C 0.043 3.957 6 C -0.124 4.124 7 C -0.071 4.071 8 C -0.100 4.100 9 C 0.192 3.808 10 C -0.174 4.174 11 C -0.072 4.072 12 C -0.193 4.193 13 C 0.106 3.894 14 N -0.485 5.485 15 C -0.089 4.089 16 C -0.143 4.143 17 C -0.121 4.121 18 C -0.145 4.145 19 C 0.075 3.925 20 C -0.426 4.426 21 H 0.090 0.910 22 C 0.071 3.929 23 N -0.773 5.773 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.260 1.260 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 11.990 1.537 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.137 4.137 3 N -0.151 5.151 4 C -0.144 4.144 5 C 0.041 3.959 6 C -0.143 4.143 7 C -0.089 4.089 8 C -0.101 4.101 9 C 0.057 3.943 10 C -0.194 4.194 11 C -0.098 4.098 12 C -0.213 4.213 13 C -0.053 4.053 14 N -0.194 5.194 15 C -0.108 4.108 16 C -0.162 4.162 17 C -0.142 4.142 18 C -0.169 4.169 19 C 0.070 3.930 20 C -0.454 4.454 21 H 0.108 0.892 22 C -0.151 4.151 23 N -0.396 5.396 24 Si 0.740 3.260 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.184 1.184 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.175 12.572 1.375 14.074 hybrid contribution 1.419 -1.511 0.035 2.073 sum 7.594 11.062 1.411 13.492 Atomic orbital electron populations 1.20266 0.90925 1.01329 1.00450 1.21021 0.95195 0.87953 1.09534 1.66731 1.08634 1.30415 1.09291 1.18732 0.89107 0.90644 1.15937 1.18861 0.92053 0.92300 0.92650 1.21256 1.00757 0.90892 1.01356 1.21141 0.93187 0.97887 0.96729 1.18325 0.93467 0.89613 1.08722 1.19936 0.89818 0.91879 0.92708 1.22130 0.95298 0.98899 1.03080 1.21493 1.00346 0.92288 0.95645 1.22102 0.95425 0.99462 1.04340 1.22715 0.92647 0.95174 0.94730 1.67682 1.40759 0.98106 1.12851 1.20919 0.98871 0.91506 0.99547 1.21067 0.93902 0.97245 1.03976 1.21315 0.98640 0.93440 1.00781 1.21299 0.94663 0.96652 1.04297 1.18440 0.92586 0.93194 0.88779 1.19709 1.01686 0.91865 1.32172 0.89187 1.26132 0.94216 1.02206 0.92514 1.69771 1.16779 1.32715 1.20336 0.86206 0.80083 0.79523 0.80207 1.18512 1.20018 1.18428 0.93244 0.93062 0.91444 0.85035 0.85540 0.84591 0.85022 0.85143 0.82898 0.86390 0.85767 0.87986 0.85581 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.01 0.34 -1.12 16 2 C 0.01 0.23 6.86 -81.81 -0.56 -0.33 16 3 N -0.44 -10.71 9.29 -5.40 -0.05 -10.76 16 4 C -0.01 -0.26 6.74 -82.76 -0.56 -0.81 16 5 C 0.04 0.86 5.88 -104.84 -0.62 0.25 16 6 C -0.12 -2.36 9.56 -39.24 -0.38 -2.74 16 7 C -0.07 -1.21 9.55 -39.31 -0.38 -1.59 16 8 C -0.10 -1.61 5.88 -104.81 -0.62 -2.23 16 9 C 0.19 2.78 6.73 -82.95 -0.56 2.23 16 10 C -0.17 -2.04 9.46 -39.09 -0.37 -2.41 16 11 C -0.07 -0.69 10.16 -39.32 -0.40 -1.09 16 12 C -0.19 -1.78 10.11 -39.36 -0.40 -2.18 16 13 C 0.11 1.16 11.18 -17.57 -0.20 0.96 16 14 N -0.49 -6.96 9.42 -9.78 -0.09 -7.05 16 15 C -0.09 -1.36 9.40 -39.31 -0.37 -1.73 16 16 C -0.14 -2.48 9.40 -39.24 -0.37 -2.85 16 17 C -0.12 -2.78 9.38 -39.54 -0.37 -3.15 16 18 C -0.14 -3.56 8.73 -39.01 -0.34 -3.90 16 19 C 0.07 1.88 5.58 -106.64 -0.59 1.29 16 20 C -0.43 -10.20 8.14 -37.86 -0.31 -10.50 16 21 H 0.09 2.02 6.87 -52.48 -0.36 1.66 16 22 C 0.07 1.60 5.18 -17.32 -0.09 1.51 16 23 N -0.77 -18.21 10.95 55.55 0.61 -17.61 16 24 Si 0.92 16.83 29.59 -169.99 -5.03 11.80 16 25 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 26 H -0.28 -4.96 7.11 56.52 0.40 -4.55 16 27 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.32 6.76 -51.93 -0.35 0.97 16 31 H 0.13 2.56 7.51 -52.48 -0.39 2.17 16 32 H 0.13 2.04 7.52 -52.48 -0.39 1.65 16 33 H 0.14 1.34 6.18 -52.49 -0.32 1.01 16 34 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.42 6.16 -52.48 -0.32 1.09 16 38 H 0.12 1.99 6.13 -52.49 -0.32 1.67 16 39 H 0.10 2.03 6.14 -52.49 -0.32 1.71 16 40 H 0.13 3.12 6.26 -52.49 -0.33 2.79 16 41 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -27.99 346.34 -10.84 -38.83 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.37 Total: 9.95 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -7.12 Total: -30.38 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.47 Total: -35.42 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.99 -10.84 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241974738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.518 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds