Wall clock time and date at job start Tue Mar 31 2020 11:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46901 * 2 1 4 4 C 1.52998 * 109.46849 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.35887 * 116.99850 * 180.02562 * 5 4 3 7 7 C 1.38816 * 119.93496 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.09802 * 180.02562 * 7 6 5 9 9 C 1.39469 * 119.96388 * 0.02562 * 8 7 6 10 10 C 1.48219 * 120.05790 * 179.97438 * 9 8 7 11 11 C 1.40084 * 119.99147 * 4.72533 * 10 9 8 12 12 N 1.32160 * 120.29180 * 179.75214 * 11 10 9 13 13 C 1.31904 * 120.28811 * 0.52732 * 12 11 10 14 14 C 1.40817 * 119.97193 * 359.72698 * 13 12 11 15 15 C 1.41322 * 120.14142 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99543 * 353.75656 * 15 14 13 17 17 C 1.40035 * 120.00071 * 173.76238 * 15 14 13 18 18 N 1.30736 * 120.00184 * 6.29348 * 17 15 14 19 19 Si 1.86806 * 120.00129 * 186.30190 * 17 15 14 20 20 H 1.48494 * 109.47120 * 59.99488 * 19 17 15 21 21 H 1.48503 * 109.47132 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46647 * 299.99503 * 19 17 15 23 23 N 1.32552 * 119.98786 * 185.00186 * 10 9 8 24 24 C 1.39461 * 119.87982 * 359.97438 * 9 8 7 25 25 C 1.38045 * 119.90149 * 359.97438 * 24 9 8 26 26 F 1.35099 * 119.98265 * 179.97438 * 25 24 9 27 27 H 1.08993 * 109.47171 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46802 * 300.00172 * 1 2 3 29 29 H 1.08999 * 109.46735 * 60.00383 * 1 2 3 30 30 H 1.08990 * 109.46952 * 239.99564 * 2 1 3 31 31 H 1.08999 * 109.46735 * 119.99617 * 2 1 3 32 32 H 1.08993 * 109.47367 * 59.99577 * 3 2 1 33 33 H 1.09001 * 109.46806 * 299.99812 * 3 2 1 34 34 H 1.09006 * 109.47320 * 59.99423 * 4 3 2 35 35 H 1.09001 * 109.47262 * 299.99531 * 4 3 2 36 36 H 1.07996 * 119.95515 * 0.03324 * 7 6 5 37 37 H 1.07996 * 120.02244 * 179.75260 * 8 7 6 38 38 H 1.08003 * 119.85721 * 359.97438 * 11 10 9 39 39 H 1.07994 * 120.01404 * 179.75689 * 13 12 11 40 40 H 0.96994 * 120.00183 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.05194 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0463 2.7899 -0.0012 6 6 5.3935 2.9679 -0.0024 7 6 6.2378 1.8661 -0.0024 8 6 7.6053 2.0429 -0.0031 9 6 8.1412 3.3305 -0.0032 10 6 9.6108 3.5229 -0.0033 11 6 10.4621 2.4150 -0.1032 12 7 11.7734 2.5801 -0.1088 13 6 12.2921 3.7888 -0.0099 14 6 11.4472 4.9104 0.0965 15 6 11.9991 6.2070 0.2032 16 1 13.0669 6.3326 0.3049 17 6 11.1614 7.3288 0.1773 18 7 9.8631 7.1754 0.1785 19 14 11.8990 9.0447 0.1407 20 1 12.7395 9.1964 -1.0740 21 1 10.8081 10.0520 0.1163 22 1 12.7356 9.2496 1.3504 23 7 10.1192 4.7430 0.0967 24 6 7.2918 4.4366 -0.0032 25 6 5.9235 4.2535 -0.0036 26 9 5.0991 5.3238 -0.0031 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9338 0.9287 0.8892 36 1 5.8232 0.8689 -0.0020 37 1 8.2610 1.1848 0.0010 38 1 10.0451 1.4216 -0.1797 39 1 13.3642 3.9183 -0.0110 40 1 9.2828 7.9524 0.1602 41 1 7.7038 5.4349 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243197737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:56 Heat of formation + Delta-G solvation = -36.112294 kcal Electronic energy + Delta-G solvation = -24944.702271 eV Core-core repulsion = 21124.641867 eV Total energy + Delta-G solvation = -3820.060404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.36411 -39.93231 -39.04341 -37.29050 -35.34970 -34.12924 -32.43033 -31.14136 -30.41057 -29.77277 -28.24338 -26.08834 -24.49682 -23.20552 -22.75922 -21.79322 -21.07089 -20.68682 -18.16139 -17.72291 -16.77712 -16.58514 -16.20868 -15.72334 -15.42327 -15.35858 -14.81483 -14.60324 -14.52811 -14.28550 -14.08131 -13.53438 -13.22345 -13.19300 -12.80297 -12.66422 -12.29577 -11.92910 -11.80096 -11.62924 -11.53324 -11.42569 -11.39517 -11.23947 -11.14268 -10.89311 -10.75405 -10.69691 -10.37517 -9.90518 -9.62380 -9.31767 -8.57612 -8.27611 -7.55748 -7.32286 -6.62249 -4.78103 1.24255 1.52370 2.54760 2.91440 2.99232 3.00692 3.07560 3.12547 3.79156 4.00838 4.47206 4.55664 4.60695 4.61778 4.73180 4.93462 4.94126 5.06104 5.08840 5.22524 5.32689 5.42681 5.45273 5.53416 5.62052 5.69434 5.76462 5.86809 5.87538 5.94537 6.01379 6.10175 6.21556 6.33236 6.36230 6.51949 6.79245 6.85709 7.00364 7.07107 7.15674 7.47633 7.54718 7.94525 8.31389 8.55869 9.13148 9.69825 10.04403 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002902 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.710872 B = 9645.266568 C =11009.802659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.058 3.942 5 O -0.311 6.311 6 C 0.088 3.912 7 C -0.190 4.190 8 C -0.078 4.078 9 C -0.024 4.024 10 C 0.138 3.862 11 C -0.107 4.107 12 N -0.429 5.429 13 C -0.060 4.060 14 C 0.208 3.792 15 C -0.410 4.410 16 H 0.092 0.908 17 C 0.067 3.933 18 N -0.712 5.712 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.263 1.263 23 N -0.443 5.443 24 C -0.076 4.076 25 C 0.059 3.941 26 F -0.137 7.137 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.279 0.721 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -8.454 -0.268 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.226 6.226 6 C 0.042 3.958 7 C -0.209 4.209 8 C -0.098 4.098 9 C -0.026 4.026 10 C -0.009 4.009 11 C -0.266 4.266 12 N -0.140 5.140 13 C -0.230 4.230 14 C 0.081 3.919 15 C -0.441 4.441 16 H 0.110 0.890 17 C -0.160 4.160 18 N -0.332 5.332 19 Si 0.738 3.262 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.187 1.187 23 N -0.161 5.161 24 C -0.095 4.095 25 C 0.039 3.961 26 F -0.116 7.116 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.100 -8.141 -0.267 16.284 hybrid contribution 0.238 0.709 -0.022 0.748 sum -13.862 -7.433 -0.289 15.732 Atomic orbital electron populations 1.21750 0.95259 1.01785 1.02119 1.21436 0.96362 0.95668 1.02442 1.21578 0.92667 0.97654 1.03840 1.22841 0.95248 0.82136 1.01492 1.86065 1.18476 1.28984 1.89029 1.19005 0.82842 0.92985 1.00941 1.20896 0.93733 0.97218 1.09058 1.21106 0.93947 0.97037 0.97683 1.18445 0.91859 0.91776 1.00493 1.20503 0.91823 0.92072 0.96546 1.22480 0.89800 0.97631 1.16650 1.67673 1.13214 1.25662 1.07451 1.23222 0.99607 0.88972 1.11245 1.19348 0.88083 0.94077 0.90350 1.19615 0.95136 0.88947 1.40450 0.89020 1.26126 0.94685 1.01801 0.93393 1.70000 1.03898 1.32320 1.26987 0.86256 0.79656 0.80173 0.80113 1.18700 1.20011 1.18708 1.69522 1.12706 1.18617 1.15211 1.21563 0.89063 1.02797 0.96077 1.16956 0.87958 0.80727 1.10440 1.91464 1.71724 1.53889 1.94523 0.92527 0.92548 0.92545 0.91642 0.91640 0.90785 0.90796 0.91972 0.91965 0.84893 0.84740 0.85389 0.84768 0.90951 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.80 5.93 -26.72 -0.16 -0.95 16 3 C -0.12 -1.02 5.58 -26.73 -0.15 -1.17 16 4 C 0.06 0.60 4.74 37.16 0.18 0.77 16 5 O -0.31 -4.62 9.99 -19.38 -0.19 -4.81 16 6 C 0.09 1.44 6.70 -39.06 -0.26 1.18 16 7 C -0.19 -2.74 9.02 -39.50 -0.36 -3.10 16 8 C -0.08 -1.28 9.41 -39.25 -0.37 -1.65 16 9 C -0.02 -0.48 5.88 -104.88 -0.62 -1.10 16 10 C 0.14 3.25 6.73 -82.76 -0.56 2.69 16 11 C -0.11 -2.43 10.61 -16.72 -0.18 -2.61 16 12 N -0.43 -10.37 10.47 -12.04 -0.13 -10.49 16 13 C -0.06 -1.48 10.97 -16.55 -0.18 -1.66 16 14 C 0.21 5.45 6.54 -84.84 -0.55 4.89 16 15 C -0.41 -10.23 9.15 -37.74 -0.35 -10.57 16 16 H 0.09 2.09 7.86 -52.49 -0.41 1.68 16 17 C 0.07 1.59 5.49 -17.34 -0.10 1.49 16 18 N -0.71 -17.63 11.51 55.55 0.64 -16.99 16 19 Si 0.91 17.52 29.56 -169.99 -5.03 12.50 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 21 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 N -0.44 -11.60 7.17 -7.51 -0.05 -11.66 16 24 C -0.08 -1.54 9.55 -39.20 -0.37 -1.92 16 25 C 0.06 1.10 7.30 -39.35 -0.29 0.82 16 26 F -0.14 -2.64 17.10 2.25 0.04 -2.60 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.57 7.65 -51.93 -0.40 0.18 16 35 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 36 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 37 H 0.13 1.91 6.21 -52.49 -0.33 1.58 16 38 H 0.13 2.47 6.21 -52.48 -0.33 2.14 16 39 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 40 H 0.28 6.31 8.29 -40.82 -0.34 5.98 16 41 H 0.17 3.82 7.55 -52.49 -0.40 3.42 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -28.74 353.41 -8.44 -37.17 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.10 Total: 4.97 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -3.94 Total: -13.41 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.46 Total: -39.14 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.19 Total: -4.81 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.74 -8.44 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243197737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.061 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds