Wall clock time and date at job start Tue Mar 31 2020 11:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46901 * 2 1 4 4 C 1.52998 * 109.46849 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.35887 * 116.99850 * 180.02562 * 5 4 3 7 7 C 1.38816 * 119.93496 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.09802 * 180.02562 * 7 6 5 9 9 C 1.39469 * 119.96388 * 0.02562 * 8 7 6 10 10 C 1.48219 * 120.05790 * 179.97438 * 9 8 7 11 11 C 1.40084 * 119.99147 * 4.72533 * 10 9 8 12 12 N 1.32160 * 120.29180 * 179.75214 * 11 10 9 13 13 C 1.31904 * 120.28811 * 0.52732 * 12 11 10 14 14 C 1.40817 * 119.97193 * 359.72698 * 13 12 11 15 15 C 1.41322 * 120.14142 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99543 * 353.75656 * 15 14 13 17 17 C 1.40035 * 120.00071 * 173.76238 * 15 14 13 18 18 N 1.30736 * 120.00184 * 6.29348 * 17 15 14 19 19 Si 1.86806 * 120.00129 * 186.30190 * 17 15 14 20 20 H 1.48494 * 109.47120 * 59.99488 * 19 17 15 21 21 H 1.48503 * 109.47132 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46647 * 299.99503 * 19 17 15 23 23 N 1.32552 * 119.98786 * 185.00186 * 10 9 8 24 24 C 1.39461 * 119.87982 * 359.97438 * 9 8 7 25 25 C 1.38045 * 119.90149 * 359.97438 * 24 9 8 26 26 F 1.35099 * 119.98265 * 179.97438 * 25 24 9 27 27 H 1.08993 * 109.47171 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46802 * 300.00172 * 1 2 3 29 29 H 1.08999 * 109.46735 * 60.00383 * 1 2 3 30 30 H 1.08990 * 109.46952 * 239.99564 * 2 1 3 31 31 H 1.08999 * 109.46735 * 119.99617 * 2 1 3 32 32 H 1.08993 * 109.47367 * 59.99577 * 3 2 1 33 33 H 1.09001 * 109.46806 * 299.99812 * 3 2 1 34 34 H 1.09006 * 109.47320 * 59.99423 * 4 3 2 35 35 H 1.09001 * 109.47262 * 299.99531 * 4 3 2 36 36 H 1.07996 * 119.95515 * 0.03324 * 7 6 5 37 37 H 1.07996 * 120.02244 * 179.75260 * 8 7 6 38 38 H 1.08003 * 119.85721 * 359.97438 * 11 10 9 39 39 H 1.07994 * 120.01404 * 179.75689 * 13 12 11 40 40 H 0.96994 * 120.00183 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.05194 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0463 2.7899 -0.0012 6 6 5.3935 2.9679 -0.0024 7 6 6.2378 1.8661 -0.0024 8 6 7.6053 2.0429 -0.0031 9 6 8.1412 3.3305 -0.0032 10 6 9.6108 3.5229 -0.0033 11 6 10.4621 2.4150 -0.1032 12 7 11.7734 2.5801 -0.1088 13 6 12.2921 3.7888 -0.0099 14 6 11.4472 4.9104 0.0965 15 6 11.9991 6.2070 0.2032 16 1 13.0669 6.3326 0.3049 17 6 11.1614 7.3288 0.1773 18 7 9.8631 7.1754 0.1785 19 14 11.8990 9.0447 0.1407 20 1 12.7395 9.1964 -1.0740 21 1 10.8081 10.0520 0.1163 22 1 12.7356 9.2496 1.3504 23 7 10.1192 4.7430 0.0967 24 6 7.2918 4.4366 -0.0032 25 6 5.9235 4.2535 -0.0036 26 9 5.0991 5.3238 -0.0031 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9338 0.9287 0.8892 36 1 5.8232 0.8689 -0.0020 37 1 8.2610 1.1848 0.0010 38 1 10.0451 1.4216 -0.1797 39 1 13.3642 3.9183 -0.0110 40 1 9.2828 7.9524 0.1602 41 1 7.7038 5.4349 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243197737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:55 Heat of formation + Delta-G solvation = -51.106790 kcal Electronic energy + Delta-G solvation = -24945.352481 eV Core-core repulsion = 21124.641867 eV Total energy + Delta-G solvation = -3820.710614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.83870 -41.28913 -40.66097 -38.59909 -36.05039 -35.92027 -34.15210 -32.80332 -31.77514 -30.76547 -29.60859 -27.84879 -25.60305 -24.63883 -24.26436 -23.05095 -22.22967 -21.87573 -19.61753 -19.25827 -18.26232 -17.73517 -17.50147 -17.34577 -17.09774 -16.54615 -16.52344 -15.84999 -15.69132 -15.48362 -15.14291 -15.03284 -14.82497 -14.27761 -13.91310 -13.69183 -13.54870 -13.38239 -13.13995 -13.05700 -12.95652 -12.87709 -12.56999 -12.23648 -12.02965 -11.99980 -11.96056 -11.81585 -11.67222 -11.48453 -11.45569 -10.99160 -10.08656 -9.87515 -9.38681 -8.85157 -8.41179 -6.67058 -0.25572 0.15026 0.84272 1.16352 1.40042 1.52578 1.54540 2.01359 2.17435 2.52422 2.86155 3.16524 3.49343 3.69343 3.82820 3.91363 3.93961 3.97189 4.08347 4.16342 4.30606 4.35819 4.37457 4.44732 4.57117 4.62069 4.67285 4.77972 4.86779 4.93244 4.96241 5.03032 5.05139 5.09823 5.16062 5.25111 5.26170 5.33852 5.45170 5.57457 5.64828 5.76146 6.10362 6.30023 6.47716 6.69670 7.28366 7.86344 8.28105 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002902 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.710872 B = 9645.266568 C =11009.802659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.118 4.118 4 C 0.046 3.954 5 O -0.326 6.326 6 C 0.105 3.895 7 C -0.171 4.171 8 C -0.060 4.060 9 C -0.055 4.055 10 C 0.127 3.873 11 C -0.109 4.109 12 N -0.436 5.436 13 C -0.082 4.082 14 C 0.177 3.823 15 C -0.437 4.437 16 H 0.104 0.896 17 C 0.023 3.977 18 N -0.745 5.745 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.254 1.254 23 N -0.474 5.474 24 C -0.090 4.090 25 C 0.036 3.964 26 F -0.148 7.148 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.150 0.850 40 H 0.283 0.717 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 -10.674 -0.323 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.028 4.028 5 O -0.240 6.240 6 C 0.058 3.942 7 C -0.189 4.189 8 C -0.079 4.079 9 C -0.057 4.057 10 C -0.020 4.020 11 C -0.268 4.268 12 N -0.147 5.147 13 C -0.251 4.251 14 C 0.050 3.950 15 C -0.468 4.468 16 H 0.122 0.878 17 C -0.201 4.201 18 N -0.366 5.366 19 Si 0.812 3.188 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.178 1.178 23 N -0.193 5.193 24 C -0.110 4.110 25 C 0.016 3.984 26 F -0.127 7.127 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.199 0.801 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.167 0.833 40 H 0.094 0.906 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.262 -10.385 -0.320 18.463 hybrid contribution 0.380 1.241 -0.006 1.298 sum -14.882 -9.144 -0.326 17.470 Atomic orbital electron populations 1.21769 0.95039 1.02356 1.01947 1.21421 0.96523 0.94197 1.03279 1.21598 0.91631 0.99021 1.03264 1.23278 0.96186 0.80097 1.03259 1.86083 1.17358 1.32197 1.88387 1.19049 0.84065 0.92264 0.98827 1.21325 0.92505 0.98634 1.06438 1.21380 0.95215 0.95891 0.95368 1.18452 0.90057 0.93502 1.03659 1.21093 0.93861 0.91662 0.95370 1.23064 0.89321 0.99061 1.15344 1.67714 1.14064 1.25355 1.07616 1.23410 1.00306 0.88949 1.12425 1.19819 0.88724 0.95280 0.91145 1.20032 0.96085 0.89433 1.41293 0.87785 1.27084 0.94860 1.05726 0.92396 1.70123 1.05295 1.33631 1.27551 0.85094 0.78754 0.74596 0.80376 1.18083 1.19607 1.17824 1.69524 1.12948 1.20411 1.16372 1.21257 0.90187 1.01645 0.97864 1.17047 0.87343 0.81810 1.12202 1.91423 1.71777 1.54693 1.94784 0.91589 0.92776 0.92757 0.90770 0.90792 0.91456 0.91439 0.90048 0.90086 0.80096 0.81883 0.81568 0.83263 0.90615 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.15 5.93 30.60 0.18 -0.97 16 3 C -0.12 -1.69 5.58 30.60 0.17 -1.52 16 4 C 0.05 0.77 4.74 71.98 0.34 1.11 16 5 O -0.33 -8.87 9.99 -92.28 -0.92 -9.79 16 6 C 0.10 3.20 6.70 22.60 0.15 3.35 16 7 C -0.17 -4.22 9.02 22.32 0.20 -4.02 16 8 C -0.06 -1.76 9.41 22.48 0.21 -1.55 16 9 C -0.05 -2.22 5.88 -20.03 -0.12 -2.33 16 10 C 0.13 6.11 6.73 42.14 0.28 6.39 16 11 C -0.11 -4.86 10.61 85.09 0.90 -3.96 16 12 N -0.44 -21.06 10.47 -192.02 -2.01 -23.07 16 13 C -0.08 -4.14 10.97 85.31 0.94 -3.20 16 14 C 0.18 9.63 6.54 40.23 0.26 9.89 16 15 C -0.44 -22.59 9.15 23.46 0.21 -22.38 16 16 H 0.10 4.87 7.86 -2.91 -0.02 4.85 16 17 C 0.02 1.11 5.49 85.29 0.47 1.58 16 18 N -0.75 -38.80 11.51 21.84 0.25 -38.55 16 19 Si 0.99 36.55 29.56 68.60 2.03 38.58 16 20 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 23 N -0.47 -25.98 7.17 -177.67 -1.27 -27.25 16 24 C -0.09 -3.82 9.55 22.52 0.22 -3.61 16 25 C 0.04 1.35 7.30 22.42 0.16 1.52 16 26 F -0.15 -5.90 17.10 44.97 0.77 -5.13 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.09 7.65 -2.38 -0.02 1.07 16 35 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 36 H 0.18 2.76 6.28 -2.91 -0.02 2.74 16 37 H 0.16 3.85 6.21 -2.91 -0.02 3.83 16 38 H 0.17 5.90 6.21 -2.91 -0.02 5.88 16 39 H 0.15 6.74 8.06 -2.91 -0.02 6.71 16 40 H 0.28 13.49 8.29 -92.71 -0.77 12.73 16 41 H 0.13 6.60 7.55 -2.91 -0.02 6.57 16 Total: -1.00 -66.26 353.41 5.20 -61.06 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.06 Total: 24.60 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 5.30 Total: -20.45 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -3.03 Total: -88.87 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.92 Total: -9.79 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.77 Total: -5.13 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -66.26 5.20 -61.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243197737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.957 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds