Wall clock time and date at job start Tue Mar 31 2020 11:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53001 * 109.47358 * 2 1
4 4 C 1.52995 * 109.47358 * 180.02562 * 3 2 1
5 5 O 1.42900 * 109.47043 * 180.02562 * 4 3 2
6 6 C 1.35766 * 117.00031 * 180.02562 * 5 4 3
7 7 C 1.38575 * 120.12669 * 0.02562 * 6 5 4
8 8 C 1.38157 * 120.12225 * 179.97438 * 7 6 5
9 9 C 1.38753 * 120.36598 * 0.02562 * 8 7 6
10 10 F 1.35100 * 119.87424 * 179.97438 * 9 8 7
11 11 C 1.37999 * 120.25007 * 359.74207 * 9 8 7
12 12 C 1.39749 * 119.86900 * 0.49081 * 11 9 8
13 13 C 1.47598 * 120.17752 * 179.79283 * 12 11 9
14 14 N 1.33047 * 120.55212 * 129.87511 * 13 12 11
15 15 C 1.31903 * 120.02987 * 180.30369 * 14 13 12
16 16 C 1.39025 * 121.22199 * 359.69187 * 15 14 13
17 17 N 1.31513 * 121.14737 * 359.97438 * 16 15 14
18 18 C 1.34091 * 119.86036 * 0.02562 * 17 16 15
19 19 C 1.40727 * 120.58275 * 180.02562 * 18 17 16
20 20 H 1.07999 * 120.00053 * 171.82493 * 19 18 17
21 21 C 1.40163 * 119.99890 * 351.81843 * 19 18 17
22 22 N 1.30689 * 119.99888 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 119.99685 * 180.27426 * 21 19 18
24 24 H 1.48501 * 109.46848 * 179.72425 * 23 21 19
25 25 H 1.48497 * 109.47394 * 299.72568 * 23 21 19
26 26 H 1.48497 * 109.47208 * 59.73024 * 23 21 19
27 27 H 1.09007 * 109.47058 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.46981 * 299.99188 * 1 2 3
29 29 H 1.08994 * 109.47558 * 59.99768 * 1 2 3
30 30 H 1.09001 * 109.47402 * 240.00186 * 2 1 3
31 31 H 1.09002 * 109.47460 * 119.99895 * 2 1 3
32 32 H 1.09001 * 109.46712 * 59.99763 * 3 2 1
33 33 H 1.09000 * 109.47184 * 300.00964 * 3 2 1
34 34 H 1.08996 * 109.47183 * 60.00598 * 4 3 2
35 35 H 1.08994 * 109.47558 * 300.00232 * 4 3 2
36 36 H 1.08006 * 119.93700 * 359.97438 * 7 6 5
37 37 H 1.07993 * 119.81539 * 180.02562 * 8 7 6
38 38 H 1.08001 * 120.06310 * 180.27922 * 11 9 8
39 39 H 1.08002 * 119.38628 * 179.67103 * 15 14 13
40 40 H 1.08008 * 119.42576 * 179.97438 * 16 15 14
41 41 H 0.97006 * 119.99931 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 8 4.0463 2.7898 0.0000
6 6 5.3922 2.9677 -0.0010
7 6 6.2388 1.8706 -0.0031
8 6 7.6085 2.0518 -0.0047
9 6 8.1469 3.3306 -0.0036
10 9 9.4877 3.4962 -0.0047
11 6 7.3179 4.4339 -0.0064
12 6 5.9310 4.2624 0.0001
13 6 5.0381 5.4376 0.0018
14 7 4.0402 5.5301 -0.8732
15 6 3.2521 6.5878 -0.8664
16 6 3.4371 7.6184 0.0481
17 7 4.4044 7.5728 0.9379
18 6 5.2319 6.5182 0.9710
19 6 6.2718 6.4534 1.9170
20 1 6.8486 5.5467 2.0241
21 6 6.5588 7.5657 2.7202
22 7 5.8604 8.6628 2.5908
23 14 7.9440 7.4822 3.9706
24 1 8.0471 8.7813 4.6826
25 1 7.6625 6.4020 4.9499
26 1 9.2237 7.1971 3.2733
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5137 0.8901
29 1 -0.3634 0.5138 -0.8899
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.6766 1.9563 0.8900
33 1 1.6766 1.9564 -0.8899
34 1 3.9329 0.9289 -0.8909
35 1 3.9337 0.9285 0.8890
36 1 5.8271 0.8721 -0.0035
37 1 8.2636 1.1933 -0.0067
38 1 7.7403 5.4279 -0.0102
39 1 2.4485 6.6546 -1.5849
40 1 2.7748 8.4714 0.0275
41 1 6.0588 9.4324 3.1469
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001243235824.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:32:26
Heat of formation + Delta-G solvation = -35.638159 kcal
Electronic energy + Delta-G solvation = -25915.368898 eV
Core-core repulsion = 22095.329054 eV
Total energy + Delta-G solvation = -3820.039844 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.133 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-48.33743 -39.76385 -38.50883 -36.91743 -35.00206 -34.17433 -32.51689 -31.41078
-29.84828 -29.17705 -28.14951 -26.15802 -24.11912 -23.50638 -22.06773 -21.49791
-21.16368 -20.57965 -17.76096 -17.62953 -16.87074 -16.39942 -16.19863 -15.78710
-15.08003 -14.88412 -14.72590 -14.56260 -14.29122 -14.17832 -13.97801 -13.39068
-13.03749 -12.75056 -12.61099 -12.55364 -12.42747 -11.85688 -11.78486 -11.56899
-11.55486 -11.39385 -11.21535 -11.11205 -10.88671 -10.76049 -10.48954 -10.31524
-10.22696 -9.89085 -9.56508 -9.22181 -8.58108 -7.86183 -7.51830 -7.27011
-6.61318 -4.77207 1.51141 1.74694 2.47496 2.95174 2.96439 2.99473
3.21397 3.53231 3.75953 4.10560 4.55508 4.72645 4.81981 4.87972
4.97300 5.06759 5.19267 5.20046 5.34114 5.47491 5.49575 5.65811
5.67252 5.70626 5.71387 5.77834 5.94456 6.00033 6.13179 6.15256
6.17754 6.22790 6.29180 6.41635 6.55615 6.59384 6.78617 6.83226
6.94263 7.11561 7.28465 7.63080 7.90653 7.94270 8.28803 8.56958
9.23190 9.78327 9.97906
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.010562 B = 0.004857 C = 0.003865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2650.454247 B = 5763.943984 C = 7241.837342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.120 4.120
3 C -0.119 4.119
4 C 0.057 3.943
5 O -0.286 6.286
6 C 0.129 3.871
7 C -0.191 4.191
8 C -0.133 4.133
9 C 0.054 3.946
10 F -0.148 7.148
11 C -0.101 4.101
12 C 0.030 3.970
13 C -0.030 4.030
14 N -0.392 5.392
15 C -0.126 4.126
16 C 0.093 3.907
17 N -0.461 5.461
18 C 0.227 3.773
19 C -0.396 4.396
20 H 0.096 0.904
21 C 0.065 3.935
22 N -0.701 5.701
23 Si 0.910 3.090
24 H -0.273 1.273
25 H -0.260 1.260
26 H -0.258 1.258
27 H 0.053 0.947
28 H 0.055 0.945
29 H 0.056 0.944
30 H 0.063 0.937
31 H 0.062 0.938
32 H 0.072 0.928
33 H 0.075 0.925
34 H 0.056 0.944
35 H 0.055 0.945
36 H 0.129 0.871
37 H 0.128 0.872
38 H 0.146 0.854
39 H 0.125 0.875
40 H 0.127 0.873
41 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.202 -11.941 -1.776 12.271
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.157 4.157
3 C -0.156 4.156
4 C -0.018 4.018
5 O -0.198 6.198
6 C 0.082 3.918
7 C -0.209 4.209
8 C -0.152 4.152
9 C 0.035 3.965
10 F -0.127 7.127
11 C -0.121 4.121
12 C 0.028 3.972
13 C -0.179 4.179
14 N -0.103 5.103
15 C -0.286 4.286
16 C -0.077 4.077
17 N -0.177 5.177
18 C 0.101 3.899
19 C -0.426 4.426
20 H 0.114 0.886
21 C -0.163 4.163
22 N -0.320 5.320
23 Si 0.732 3.268
24 H -0.198 1.198
25 H -0.184 1.184
26 H -0.182 1.182
27 H 0.073 0.927
28 H 0.075 0.925
29 H 0.075 0.925
30 H 0.081 0.919
31 H 0.081 0.919
32 H 0.091 0.909
33 H 0.093 0.907
34 H 0.075 0.925
35 H 0.074 0.926
36 H 0.147 0.853
37 H 0.146 0.854
38 H 0.164 0.836
39 H 0.142 0.858
40 H 0.145 0.855
41 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -2.391 -11.492 -1.684 11.858
hybrid contribution 0.769 -0.104 0.540 0.946
sum -1.622 -11.596 -1.144 11.765
Atomic orbital electron populations
1.21747 0.95404 1.01508 1.02210 1.21425 0.96260 0.95978 1.02079
1.21533 0.92922 0.97132 1.04022 1.22764 0.95354 0.83094 1.00636
1.86244 1.18433 1.27221 1.87940 1.19136 0.82616 0.93041 0.96969
1.20843 0.93158 0.97841 1.09101 1.20706 0.95097 0.95474 1.03959
1.17388 0.76931 0.94033 1.08173 1.91439 1.30202 1.96453 1.94617
1.21154 0.91861 0.98833 1.00249 1.17436 0.90988 0.89317 0.99504
1.20869 0.99368 0.96943 1.00740 1.67743 1.00984 1.21710 1.19901
1.22370 1.04869 0.95214 1.06153 1.23392 0.95384 0.96977 0.91953
1.69555 1.03910 1.23431 1.20849 1.20321 0.91814 0.86864 0.90878
1.19718 1.11149 0.99119 1.12600 0.88609 1.26218 0.97490 0.94851
0.97749 1.70037 1.30889 1.01491 1.29583 0.86306 0.81154 0.78963
0.80328 1.19801 1.18417 1.18204 0.92741 0.92549 0.92516 0.91864
0.91892 0.90892 0.90661 0.92537 0.92648 0.85319 0.85438 0.83607
0.85781 0.85521 0.90743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16
2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16
3 C -0.12 -1.45 5.58 -26.73 -0.15 -1.60 16
4 C 0.06 0.79 4.74 37.15 0.18 0.96 16
5 O -0.29 -5.50 9.16 -19.01 -0.17 -5.68 16
6 C 0.13 2.53 6.68 -38.71 -0.26 2.27 16
7 C -0.19 -3.04 9.03 -39.49 -0.36 -3.39 16
8 C -0.13 -2.09 10.01 -39.42 -0.39 -2.49 16
9 C 0.05 0.98 7.29 -39.48 -0.29 0.69 16
10 F -0.15 -2.63 17.26 2.25 0.04 -2.59 16
11 C -0.10 -2.06 7.73 -39.10 -0.30 -2.36 16
12 C 0.03 0.66 5.18 -104.76 -0.54 0.12 16
13 C -0.03 -0.76 6.19 -80.22 -0.50 -1.26 16
14 N -0.39 -9.74 9.89 -7.86 -0.08 -9.82 16
15 C -0.13 -2.92 11.17 -17.23 -0.19 -3.11 16
16 C 0.09 2.21 11.17 -17.40 -0.19 2.02 16
17 N -0.46 -12.41 8.12 -9.55 -0.08 -12.48 16
18 C 0.23 6.05 6.67 -82.64 -0.55 5.50 16
19 C -0.40 -10.05 7.91 -37.92 -0.30 -10.35 16
20 H 0.10 2.30 5.83 -52.49 -0.31 1.99 16
21 C 0.07 1.57 5.50 -17.32 -0.10 1.47 16
22 N -0.70 -17.62 11.54 55.56 0.64 -16.98 16
23 Si 0.91 17.73 29.56 -169.99 -5.03 12.71 16
24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16
25 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16
26 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16
27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16
35 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16
36 H 0.13 1.63 6.29 -52.48 -0.33 1.30 16
37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16
38 H 0.15 3.05 7.41 -52.49 -0.39 2.66 16
39 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16
40 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16
41 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16
LS Contribution 351.86 15.07 5.30 5.30
Total: -1.00 -29.50 351.86 -8.29 -37.79
By element:
Atomic # 1 Polarization: 10.65 SS G_CDS: -5.18 Total: 5.47 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: -3.73 Total: -13.72 kcal
Atomic # 7 Polarization: -39.77 SS G_CDS: 0.49 Total: -39.28 kcal
Atomic # 8 Polarization: -5.50 SS G_CDS: -0.17 Total: -5.68 kcal
Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal
Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.71 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -29.50 -8.29 -37.79 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243235824.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.149 kcal
(2) G-P(sol) polarization free energy of solvation -29.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds