Wall clock time and date at job start Tue Mar 31 2020 11:32:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53001 * 109.47358 * 2 1
4 4 C 1.52995 * 109.47358 * 180.02562 * 3 2 1
5 5 O 1.42900 * 109.47043 * 180.02562 * 4 3 2
6 6 C 1.35766 * 117.00031 * 180.02562 * 5 4 3
7 7 C 1.38575 * 120.12669 * 0.02562 * 6 5 4
8 8 C 1.38157 * 120.12225 * 179.97438 * 7 6 5
9 9 C 1.38753 * 120.36598 * 0.02562 * 8 7 6
10 10 F 1.35100 * 119.87424 * 179.97438 * 9 8 7
11 11 C 1.37999 * 120.25007 * 359.74207 * 9 8 7
12 12 C 1.39749 * 119.86900 * 0.49081 * 11 9 8
13 13 C 1.47598 * 120.17752 * 179.79283 * 12 11 9
14 14 N 1.33047 * 120.55212 * 129.87511 * 13 12 11
15 15 C 1.31903 * 120.02987 * 180.30369 * 14 13 12
16 16 C 1.39025 * 121.22199 * 359.69187 * 15 14 13
17 17 N 1.31513 * 121.14737 * 359.97438 * 16 15 14
18 18 C 1.34091 * 119.86036 * 0.02562 * 17 16 15
19 19 C 1.40727 * 120.58275 * 180.02562 * 18 17 16
20 20 H 1.07999 * 120.00053 * 171.82493 * 19 18 17
21 21 C 1.40163 * 119.99890 * 351.81843 * 19 18 17
22 22 N 1.30689 * 119.99888 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 119.99685 * 180.27426 * 21 19 18
24 24 H 1.48501 * 109.46848 * 179.72425 * 23 21 19
25 25 H 1.48497 * 109.47394 * 299.72568 * 23 21 19
26 26 H 1.48497 * 109.47208 * 59.73024 * 23 21 19
27 27 H 1.09007 * 109.47058 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.46981 * 299.99188 * 1 2 3
29 29 H 1.08994 * 109.47558 * 59.99768 * 1 2 3
30 30 H 1.09001 * 109.47402 * 240.00186 * 2 1 3
31 31 H 1.09002 * 109.47460 * 119.99895 * 2 1 3
32 32 H 1.09001 * 109.46712 * 59.99763 * 3 2 1
33 33 H 1.09000 * 109.47184 * 300.00964 * 3 2 1
34 34 H 1.08996 * 109.47183 * 60.00598 * 4 3 2
35 35 H 1.08994 * 109.47558 * 300.00232 * 4 3 2
36 36 H 1.08006 * 119.93700 * 359.97438 * 7 6 5
37 37 H 1.07993 * 119.81539 * 180.02562 * 8 7 6
38 38 H 1.08001 * 120.06310 * 180.27922 * 11 9 8
39 39 H 1.08002 * 119.38628 * 179.67103 * 15 14 13
40 40 H 1.08008 * 119.42576 * 179.97438 * 16 15 14
41 41 H 0.97006 * 119.99931 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 8 4.0463 2.7898 0.0000
6 6 5.3922 2.9677 -0.0010
7 6 6.2388 1.8706 -0.0031
8 6 7.6085 2.0518 -0.0047
9 6 8.1469 3.3306 -0.0036
10 9 9.4877 3.4962 -0.0047
11 6 7.3179 4.4339 -0.0064
12 6 5.9310 4.2624 0.0001
13 6 5.0381 5.4376 0.0018
14 7 4.0402 5.5301 -0.8732
15 6 3.2521 6.5878 -0.8664
16 6 3.4371 7.6184 0.0481
17 7 4.4044 7.5728 0.9379
18 6 5.2319 6.5182 0.9710
19 6 6.2718 6.4534 1.9170
20 1 6.8486 5.5467 2.0241
21 6 6.5588 7.5657 2.7202
22 7 5.8604 8.6628 2.5908
23 14 7.9440 7.4822 3.9706
24 1 8.0471 8.7813 4.6826
25 1 7.6625 6.4020 4.9499
26 1 9.2237 7.1971 3.2733
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5137 0.8901
29 1 -0.3634 0.5138 -0.8899
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.6766 1.9563 0.8900
33 1 1.6766 1.9564 -0.8899
34 1 3.9329 0.9289 -0.8909
35 1 3.9337 0.9285 0.8890
36 1 5.8271 0.8721 -0.0035
37 1 8.2636 1.1933 -0.0067
38 1 7.7403 5.4279 -0.0102
39 1 2.4485 6.6546 -1.5849
40 1 2.7748 8.4714 0.0275
41 1 6.0588 9.4324 3.1469
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243235824.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:32:25
Heat of formation + Delta-G solvation = -51.442692 kcal
Electronic energy + Delta-G solvation = -25916.054234 eV
Core-core repulsion = 22095.329054 eV
Total energy + Delta-G solvation = -3820.725180 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.133 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-49.73604 -41.22953 -40.24562 -38.26394 -36.04543 -35.88812 -34.26271 -33.13219
-30.98988 -30.74683 -29.47485 -27.98660 -25.30989 -25.02623 -23.81073 -22.78326
-22.51899 -21.80846 -19.57374 -19.03741 -18.31464 -18.03897 -17.41364 -17.22831
-16.71905 -16.42705 -16.33690 -15.81002 -15.57029 -15.55479 -15.19608 -14.79209
-14.43425 -14.33813 -13.95514 -13.70960 -13.69746 -13.43211 -13.32509 -13.03467
-12.97135 -12.78250 -12.46555 -12.13232 -12.04444 -11.98861 -11.74368 -11.69798
-11.60402 -11.48306 -11.38765 -11.04684 -10.15440 -9.55430 -9.32168 -8.85459
-8.42625 -6.66373 0.01481 0.31997 0.70052 1.20852 1.35810 1.48534
1.53295 2.13386 2.31553 2.63798 2.74607 3.31999 3.65667 3.71100
3.90402 3.93533 3.98074 4.07798 4.16926 4.18582 4.23042 4.37070
4.38166 4.44631 4.57286 4.63934 4.73364 4.81706 4.86060 4.92617
5.01049 5.04782 5.05971 5.09669 5.18656 5.21940 5.32028 5.32716
5.44039 5.47843 5.79931 5.85884 6.07105 6.42051 6.60133 6.70285
7.35892 7.90272 8.21082
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.010562 B = 0.004857 C = 0.003865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2650.454247 B = 5763.943984 C = 7241.837342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.112 4.112
3 C -0.116 4.116
4 C 0.048 3.952
5 O -0.319 6.319
6 C 0.123 3.877
7 C -0.175 4.175
8 C -0.108 4.108
9 C 0.046 3.954
10 F -0.147 7.147
11 C -0.110 4.110
12 C -0.014 4.014
13 C -0.034 4.034
14 N -0.410 5.410
15 C -0.132 4.132
16 C 0.079 3.921
17 N -0.496 5.496
18 C 0.194 3.806
19 C -0.417 4.417
20 H 0.100 0.900
21 C 0.024 3.976
22 N -0.738 5.738
23 Si 0.982 3.018
24 H -0.261 1.261
25 H -0.255 1.255
26 H -0.254 1.254
27 H 0.071 0.929
28 H 0.049 0.951
29 H 0.052 0.948
30 H 0.077 0.923
31 H 0.074 0.926
32 H 0.054 0.946
33 H 0.059 0.941
34 H 0.078 0.922
35 H 0.075 0.925
36 H 0.172 0.828
37 H 0.172 0.828
38 H 0.124 0.876
39 H 0.154 0.846
40 H 0.155 0.845
41 H 0.289 0.711
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.281 -15.107 -1.443 15.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.150 4.150
3 C -0.154 4.154
4 C -0.026 4.026
5 O -0.232 6.232
6 C 0.076 3.924
7 C -0.194 4.194
8 C -0.127 4.127
9 C 0.027 3.973
10 F -0.126 7.126
11 C -0.131 4.131
12 C -0.016 4.016
13 C -0.183 4.183
14 N -0.121 5.121
15 C -0.292 4.292
16 C -0.090 4.090
17 N -0.213 5.213
18 C 0.068 3.932
19 C -0.447 4.447
20 H 0.118 0.882
21 C -0.200 4.200
22 N -0.358 5.358
23 Si 0.801 3.199
24 H -0.185 1.185
25 H -0.179 1.179
26 H -0.177 1.177
27 H 0.090 0.910
28 H 0.068 0.932
29 H 0.071 0.929
30 H 0.095 0.905
31 H 0.093 0.907
32 H 0.073 0.927
33 H 0.078 0.922
34 H 0.096 0.904
35 H 0.093 0.907
36 H 0.189 0.811
37 H 0.190 0.810
38 H 0.142 0.858
39 H 0.171 0.829
40 H 0.173 0.827
41 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -1.503 -14.661 -1.378 14.802
hybrid contribution 0.415 0.776 0.338 0.943
sum -1.088 -13.885 -1.040 13.966
Atomic orbital electron populations
1.21766 0.95051 1.02459 1.01752 1.21400 0.96522 0.93726 1.03314
1.21551 0.92341 0.99070 1.02398 1.23134 0.95918 0.81099 1.02476
1.86213 1.18484 1.30642 1.87885 1.19280 0.83427 0.93017 0.96702
1.21253 0.92775 0.98530 1.06831 1.21178 0.95557 0.95535 1.00387
1.17464 0.76767 0.94420 1.08682 1.91441 1.29954 1.96529 1.94656
1.20995 0.91840 0.98952 1.01274 1.17494 0.91211 0.89741 1.03181
1.21323 0.99513 0.97675 0.99832 1.67823 1.01653 1.22391 1.20261
1.22864 1.05227 0.94680 1.06383 1.23852 0.95294 0.98144 0.91681
1.69499 1.05090 1.24317 1.22432 1.20790 0.92635 0.87726 0.92044
1.19985 1.11435 1.00019 1.13283 0.88222 1.27120 0.99724 0.93942
0.99250 1.70108 1.32599 1.02316 1.30751 0.85242 0.77649 0.79472
0.77578 1.18465 1.17917 1.17748 0.91047 0.93164 0.92932 0.90469
0.90697 0.92706 0.92191 0.90386 0.90705 0.81079 0.81027 0.85757
0.82862 0.82749 0.90005
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.34 9.91 71.98 0.71 -1.62 16
2 C -0.11 -1.80 5.93 30.59 0.18 -1.62 16
3 C -0.12 -2.73 5.58 30.59 0.17 -2.56 16
4 C 0.05 1.22 4.74 71.98 0.34 1.56 16
5 O -0.32 -12.13 9.16 -90.93 -0.83 -12.96 16
6 C 0.12 4.69 6.68 22.84 0.15 4.84 16
7 C -0.18 -4.94 9.03 22.33 0.20 -4.74 16
8 C -0.11 -2.95 10.01 22.37 0.22 -2.73 16
9 C 0.05 1.59 7.29 22.34 0.16 1.75 16
10 F -0.15 -4.96 17.26 44.97 0.78 -4.18 16
11 C -0.11 -4.60 7.73 22.58 0.17 -4.43 16
12 C -0.01 -0.64 5.18 -19.96 -0.10 -0.74 16
13 C -0.03 -1.79 6.19 43.57 0.27 -1.52 16
14 N -0.41 -21.05 9.89 -178.77 -1.77 -22.82 16
15 C -0.13 -6.31 11.17 84.87 0.95 -5.36 16
16 C 0.08 3.88 11.17 84.93 0.95 4.83 16
17 N -0.50 -27.96 8.12 -184.14 -1.50 -29.46 16
18 C 0.19 10.87 6.67 41.55 0.28 11.14 16
19 C -0.42 -22.10 7.91 23.35 0.18 -21.92 16
20 H 0.10 5.00 5.83 -2.91 -0.02 4.98 16
21 C 0.02 1.20 5.50 85.33 0.47 1.67 16
22 N -0.74 -38.38 11.54 21.86 0.25 -38.12 16
23 Si 0.98 36.71 29.56 68.60 2.03 38.74 16
24 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16
25 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16
26 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16
27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16
28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16
29 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16
30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16
32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.08 1.63 7.66 -2.39 -0.02 1.61 16
35 H 0.07 1.59 7.66 -2.39 -0.02 1.57 16
36 H 0.17 3.34 6.29 -2.91 -0.02 3.32 16
37 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16
38 H 0.12 5.55 7.41 -2.91 -0.02 5.52 16
39 H 0.15 6.17 8.06 -2.91 -0.02 6.15 16
40 H 0.16 6.43 8.06 -2.91 -0.02 6.41 16
41 H 0.29 13.43 8.29 -92.70 -0.77 12.67 16
Total: -1.00 -68.07 351.86 5.33 -62.74
By element:
Atomic # 1 Polarization: 26.44 SS G_CDS: 1.05 Total: 27.49 kcal
Atomic # 6 Polarization: -26.75 SS G_CDS: 5.32 Total: -21.43 kcal
Atomic # 7 Polarization: -87.39 SS G_CDS: -3.01 Total: -90.40 kcal
Atomic # 8 Polarization: -12.13 SS G_CDS: -0.83 Total: -12.96 kcal
Atomic # 9 Polarization: -4.96 SS G_CDS: 0.78 Total: -4.18 kcal
Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal
Total: -68.07 5.33 -62.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243235824.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.302 kcal
(2) G-P(sol) polarization free energy of solvation -68.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.771 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds