Wall clock time and date at job start Tue Mar 31 2020 11:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47163 * 180.02562 * 4 3 2 6 6 C 1.35794 * 117.00176 * 179.97438 * 5 4 3 7 7 C 1.38549 * 120.11817 * 359.97438 * 6 5 4 8 8 C 1.38190 * 120.11460 * 180.02562 * 7 6 5 9 9 C 1.38754 * 120.34851 * 0.02562 * 8 7 6 10 10 F 1.35105 * 119.87633 * 180.02562 * 9 8 7 11 11 C 1.38018 * 120.24361 * 359.71500 * 9 8 7 12 12 C 1.39685 * 119.87690 * 0.56031 * 11 9 8 13 13 C 1.47761 * 120.17344 * 179.71629 * 12 11 9 14 14 C 1.40526 * 120.79905 * 309.72590 * 13 12 11 15 15 N 1.31554 * 119.08459 * 179.97438 * 14 13 12 16 16 C 1.33674 * 120.83915 * 0.02562 * 15 14 13 17 17 C 1.41001 * 119.12479 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.40124 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.30673 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99659 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47725 * 89.99891 * 21 19 17 23 23 H 1.48504 * 109.46883 * 209.99950 * 21 19 17 24 24 H 1.48504 * 109.47181 * 329.99648 * 21 19 17 25 25 N 1.33675 * 121.74719 * 359.97219 * 16 15 14 26 26 C 1.31552 * 120.84249 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47611 * 300.00149 * 1 2 3 28 28 H 1.08995 * 109.47254 * 60.00174 * 1 2 3 29 29 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47371 * 239.99445 * 2 1 3 31 31 H 1.09006 * 109.46988 * 119.99460 * 2 1 3 32 32 H 1.09003 * 109.47644 * 59.99875 * 3 2 1 33 33 H 1.09000 * 109.47173 * 299.99650 * 3 2 1 34 34 H 1.08990 * 109.47133 * 59.99828 * 4 3 2 35 35 H 1.09006 * 109.46988 * 299.99460 * 4 3 2 36 36 H 1.07999 * 119.94502 * 0.04462 * 7 6 5 37 37 H 1.07993 * 119.81956 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.06016 * 180.29883 * 11 9 8 39 39 H 1.08003 * 120.45224 * 0.25717 * 14 13 12 40 40 H 0.97002 * 119.99833 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.45928 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.3926 2.9677 0.0024 7 6 6.2389 1.8707 0.0035 8 6 7.6088 2.0519 0.0052 9 6 8.1469 3.3309 0.0064 10 9 9.4877 3.4970 0.0075 11 6 7.3174 4.4340 -0.0001 12 6 5.9311 4.2622 0.0040 13 6 5.0370 5.4386 0.0035 14 6 5.2183 6.4806 0.9288 15 7 4.4028 7.5124 0.8978 16 6 3.4126 7.5766 0.0022 17 6 2.5594 8.6992 0.0016 18 1 2.7102 9.4923 0.7189 19 6 1.5152 8.7851 -0.9288 20 7 1.3325 7.8251 -1.7963 21 14 0.3845 10.2719 -0.9290 22 1 0.9391 11.3157 -1.8279 23 1 -0.9620 9.8697 -1.4092 24 1 0.2771 10.8124 0.4500 25 7 3.2098 6.6048 -0.8930 26 6 3.9851 5.5424 -0.9224 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8890 35 1 3.9330 0.9288 0.8910 36 1 5.8272 0.8723 0.0027 37 1 8.2641 1.1934 0.0056 38 1 7.7394 5.4281 -0.0040 39 1 6.0189 6.4369 1.6524 40 1 0.6098 7.8847 -2.4407 41 1 3.8154 4.7607 -1.6481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243237519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:38 Heat of formation + Delta-G solvation = -32.050068 kcal Electronic energy + Delta-G solvation = -25371.638079 eV Core-core repulsion = 21551.753827 eV Total energy + Delta-G solvation = -3819.884253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.57051 -39.97516 -38.69930 -37.11562 -35.06292 -33.99947 -32.21302 -31.77795 -29.96616 -29.43851 -28.35080 -26.12325 -24.30483 -22.95573 -22.64211 -21.62105 -21.26969 -20.66765 -17.94922 -17.85010 -16.95609 -16.53631 -16.32085 -15.83147 -15.30367 -15.00620 -14.69431 -14.55990 -14.46371 -14.38426 -13.72471 -13.43306 -13.12549 -12.81056 -12.70434 -12.67098 -12.57077 -12.11088 -11.96839 -11.63020 -11.36719 -11.32295 -11.27408 -11.20710 -10.88156 -10.79982 -10.74065 -10.44102 -10.34622 -9.61503 -9.19075 -9.16770 -8.95385 -8.10261 -7.55469 -7.24181 -6.61849 -4.79466 1.33898 1.50786 2.55326 2.97712 3.00239 3.03713 3.07390 3.37001 3.80625 3.88932 4.52544 4.58182 4.77912 4.79787 4.91500 4.97341 5.03107 5.13035 5.22774 5.37672 5.42996 5.57188 5.63200 5.68098 5.73340 5.75464 5.86692 5.91526 5.94569 6.01817 6.11372 6.15789 6.23399 6.31909 6.37792 6.43724 6.51733 6.87248 6.98063 7.03141 7.29069 7.56814 7.73762 8.07275 8.41288 8.48823 9.05250 10.01765 10.21426 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.004438 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.424526 B = 6307.972577 C = 9106.033417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.059 3.941 5 O -0.295 6.295 6 C 0.113 3.887 7 C -0.181 4.181 8 C -0.141 4.141 9 C 0.063 3.937 10 F -0.149 7.149 11 C -0.128 4.128 12 C 0.028 3.972 13 C -0.326 4.326 14 C 0.188 3.812 15 N -0.595 5.595 16 C 0.384 3.616 17 C -0.384 4.384 18 H 0.095 0.905 19 C 0.063 3.937 20 N -0.699 5.699 21 Si 0.920 3.080 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.258 1.258 25 N -0.509 5.509 26 C 0.200 3.800 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.278 0.722 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -13.741 0.893 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.017 4.017 5 O -0.208 6.208 6 C 0.067 3.933 7 C -0.200 4.200 8 C -0.161 4.161 9 C 0.043 3.957 10 F -0.128 7.128 11 C -0.148 4.148 12 C 0.025 3.975 13 C -0.337 4.337 14 C 0.014 3.986 15 N -0.313 5.313 16 C 0.151 3.849 17 C -0.417 4.417 18 H 0.113 0.887 19 C -0.166 4.166 20 N -0.319 5.319 21 Si 0.743 3.257 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.182 1.182 25 N -0.225 5.225 26 C 0.023 3.977 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.089 0.911 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.065 -12.712 0.694 12.775 hybrid contribution 0.574 -0.607 -0.053 0.837 sum 1.639 -13.319 0.640 13.434 Atomic orbital electron populations 1.21751 0.95298 1.01533 1.02377 1.21415 0.96387 0.95830 1.02013 1.21570 0.92646 0.97326 1.04337 1.22798 0.95513 0.82614 1.00770 1.86208 1.18450 1.27892 1.88222 1.19183 0.82640 0.93220 0.98269 1.20894 0.93134 0.98014 1.07910 1.20714 0.95157 0.95505 1.04678 1.17466 0.76841 0.94184 1.07181 1.91447 1.30344 1.96451 1.94519 1.21116 0.92064 0.98246 1.03331 1.17879 0.91211 0.90313 0.98073 1.19481 1.06033 0.98937 1.09201 1.22622 0.94617 0.88042 0.93358 1.68643 1.08880 1.25909 1.27885 1.19938 0.88513 0.91865 0.84600 1.19428 1.07434 1.02087 1.12779 0.88707 1.26191 0.98101 0.97805 0.94472 1.70139 1.23581 1.28526 1.09689 0.86111 0.78765 0.80697 0.80101 1.19093 1.19866 1.18172 1.69361 1.26742 1.01751 1.24628 1.22929 0.87551 0.94401 0.92824 0.92502 0.92394 0.92730 0.91863 0.91946 0.90723 0.90451 0.92387 0.92515 0.85239 0.85406 0.84508 0.85363 0.91110 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -1.41 5.58 -26.73 -0.15 -1.56 16 4 C 0.06 0.72 4.74 37.16 0.18 0.89 16 5 O -0.29 -4.98 8.56 -19.09 -0.16 -5.15 16 6 C 0.11 1.89 6.62 -38.73 -0.26 1.63 16 7 C -0.18 -2.47 9.03 -39.48 -0.36 -2.83 16 8 C -0.14 -1.91 10.02 -39.41 -0.39 -2.31 16 9 C 0.06 0.96 7.29 -39.47 -0.29 0.67 16 10 F -0.15 -2.27 17.26 2.25 0.04 -2.23 16 11 C -0.13 -2.15 9.53 -39.12 -0.37 -2.52 16 12 C 0.03 0.51 5.53 -104.72 -0.58 -0.06 16 13 C -0.33 -7.20 5.31 -104.28 -0.55 -7.75 16 14 C 0.19 4.32 10.86 -16.81 -0.18 4.14 16 15 N -0.59 -15.66 10.33 -12.40 -0.13 -15.79 16 16 C 0.38 10.72 7.35 -158.15 -1.16 9.56 16 17 C -0.38 -10.31 9.35 -37.83 -0.35 -10.66 16 18 H 0.09 2.44 7.85 -52.49 -0.41 2.03 16 19 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 20 N -0.70 -17.90 11.40 55.56 0.63 -17.27 16 21 Si 0.92 17.96 29.56 -169.99 -5.02 12.94 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 25 N -0.51 -13.92 7.82 -12.40 -0.10 -14.02 16 26 C 0.20 4.81 10.11 -16.81 -0.17 4.64 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.13 1.40 6.29 -52.49 -0.33 1.07 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.14 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.13 2.53 8.06 -52.48 -0.42 2.11 16 40 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 41 H 0.13 2.85 7.76 -52.49 -0.41 2.44 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -29.61 355.61 -9.22 -38.83 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.31 Total: 4.21 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -4.53 Total: -6.88 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.41 Total: -47.07 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.16 Total: -5.15 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.61 -9.22 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243237519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.777 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds