Wall clock time and date at job start Tue Mar 31 2020 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47163 * 180.02562 * 4 3 2 6 6 C 1.35794 * 117.00176 * 179.97438 * 5 4 3 7 7 C 1.38549 * 120.11817 * 359.97438 * 6 5 4 8 8 C 1.38190 * 120.11460 * 180.02562 * 7 6 5 9 9 C 1.38754 * 120.34851 * 0.02562 * 8 7 6 10 10 F 1.35105 * 119.87633 * 180.02562 * 9 8 7 11 11 C 1.38018 * 120.24361 * 359.71500 * 9 8 7 12 12 C 1.39685 * 119.87690 * 0.56031 * 11 9 8 13 13 C 1.47761 * 120.17344 * 179.71629 * 12 11 9 14 14 C 1.40526 * 120.79905 * 309.72590 * 13 12 11 15 15 N 1.31554 * 119.08459 * 179.97438 * 14 13 12 16 16 C 1.33674 * 120.83915 * 0.02562 * 15 14 13 17 17 C 1.41001 * 119.12479 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.40124 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.30673 * 120.00090 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99659 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47725 * 89.99891 * 21 19 17 23 23 H 1.48504 * 109.46883 * 209.99950 * 21 19 17 24 24 H 1.48504 * 109.47181 * 329.99648 * 21 19 17 25 25 N 1.33675 * 121.74719 * 359.97219 * 16 15 14 26 26 C 1.31552 * 120.84249 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47611 * 300.00149 * 1 2 3 28 28 H 1.08995 * 109.47254 * 60.00174 * 1 2 3 29 29 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47371 * 239.99445 * 2 1 3 31 31 H 1.09006 * 109.46988 * 119.99460 * 2 1 3 32 32 H 1.09003 * 109.47644 * 59.99875 * 3 2 1 33 33 H 1.09000 * 109.47173 * 299.99650 * 3 2 1 34 34 H 1.08990 * 109.47133 * 59.99828 * 4 3 2 35 35 H 1.09006 * 109.46988 * 299.99460 * 4 3 2 36 36 H 1.07999 * 119.94502 * 0.04462 * 7 6 5 37 37 H 1.07993 * 119.81956 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.06016 * 180.29883 * 11 9 8 39 39 H 1.08003 * 120.45224 * 0.25717 * 14 13 12 40 40 H 0.97002 * 119.99833 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.45928 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.3926 2.9677 0.0024 7 6 6.2389 1.8707 0.0035 8 6 7.6088 2.0519 0.0052 9 6 8.1469 3.3309 0.0064 10 9 9.4877 3.4970 0.0075 11 6 7.3174 4.4340 -0.0001 12 6 5.9311 4.2622 0.0040 13 6 5.0370 5.4386 0.0035 14 6 5.2183 6.4806 0.9288 15 7 4.4028 7.5124 0.8978 16 6 3.4126 7.5766 0.0022 17 6 2.5594 8.6992 0.0016 18 1 2.7102 9.4923 0.7189 19 6 1.5152 8.7851 -0.9288 20 7 1.3325 7.8251 -1.7963 21 14 0.3845 10.2719 -0.9290 22 1 0.9391 11.3157 -1.8279 23 1 -0.9620 9.8697 -1.4092 24 1 0.2771 10.8124 0.4500 25 7 3.2098 6.6048 -0.8930 26 6 3.9851 5.5424 -0.9224 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8890 35 1 3.9330 0.9288 0.8910 36 1 5.8272 0.8723 0.0027 37 1 8.2641 1.1934 0.0056 38 1 7.7394 5.4281 -0.0040 39 1 6.0189 6.4369 1.6524 40 1 0.6098 7.8847 -2.4407 41 1 3.8154 4.7607 -1.6481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243237519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:37 Heat of formation + Delta-G solvation = -47.067182 kcal Electronic energy + Delta-G solvation = -25372.289270 eV Core-core repulsion = 21551.753827 eV Total energy + Delta-G solvation = -3820.535444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.76850 -41.33973 -40.44219 -38.32323 -35.93903 -35.81776 -33.87625 -33.59853 -31.10930 -30.86293 -29.60102 -27.84552 -25.40782 -24.49704 -24.38591 -22.78190 -22.55431 -21.82539 -19.82047 -19.04379 -18.22649 -18.10527 -17.46765 -17.25168 -16.88968 -16.45281 -16.19670 -15.72479 -15.57974 -15.54796 -14.95349 -14.90805 -14.50365 -14.35141 -14.11897 -13.88237 -13.68970 -13.62746 -13.10148 -13.00616 -12.92558 -12.71026 -12.66592 -12.27955 -12.00749 -11.96956 -11.83100 -11.73834 -11.41301 -11.36440 -11.13508 -10.98654 -10.41886 -9.61860 -9.33199 -8.82560 -8.45771 -6.74837 0.00993 0.27823 0.82543 1.06641 1.39432 1.50921 1.56078 2.18515 2.27079 2.58480 2.76377 3.35139 3.73708 3.78214 3.92231 3.93659 3.95586 3.98290 4.05367 4.15150 4.17550 4.25166 4.36223 4.38224 4.42970 4.61472 4.70400 4.84361 4.90262 4.92249 4.93927 5.03605 5.08438 5.15704 5.17315 5.21726 5.29506 5.31366 5.43052 5.53209 5.76514 5.81800 6.10499 6.48911 6.55257 6.57459 7.14438 8.17958 8.31993 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.004438 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.424526 B = 6307.972577 C = 9106.033417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.121 4.121 4 C 0.052 3.948 5 O -0.327 6.327 6 C 0.111 3.889 7 C -0.169 4.169 8 C -0.116 4.116 9 C 0.053 3.947 10 F -0.148 7.148 11 C -0.126 4.126 12 C -0.013 4.013 13 C -0.301 4.301 14 C 0.172 3.828 15 N -0.620 5.620 16 C 0.356 3.644 17 C -0.426 4.426 18 H 0.092 0.908 19 C 0.022 3.978 20 N -0.738 5.738 21 Si 1.001 2.999 22 H -0.258 1.258 23 H -0.261 1.261 24 H -0.256 1.256 25 N -0.539 5.539 26 C 0.182 3.818 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.286 0.714 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -16.499 0.971 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.158 4.158 4 C -0.022 4.022 5 O -0.241 6.241 6 C 0.065 3.935 7 C -0.187 4.187 8 C -0.135 4.135 9 C 0.033 3.967 10 F -0.127 7.127 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.311 4.311 14 C 0.000 4.000 15 N -0.340 5.340 16 C 0.122 3.878 17 C -0.460 4.460 18 H 0.110 0.890 19 C -0.202 4.202 20 N -0.359 5.359 21 Si 0.820 3.180 22 H -0.183 1.183 23 H -0.185 1.185 24 H -0.179 1.179 25 N -0.256 5.256 26 C 0.008 3.992 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.098 0.902 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.003 -15.533 0.776 15.681 hybrid contribution 0.501 -0.037 -0.050 0.505 sum 2.504 -15.571 0.726 15.788 Atomic orbital electron populations 1.21780 0.95420 1.02421 1.01616 1.21389 0.96247 0.93770 1.03441 1.21586 0.92838 0.99048 1.02357 1.23104 0.95409 0.80916 1.02796 1.86185 1.18805 1.30930 1.88214 1.19303 0.83137 0.93313 0.97763 1.21244 0.92770 0.98653 1.06034 1.21171 0.95553 0.95768 1.00997 1.17534 0.76757 0.94562 1.07801 1.91455 1.30158 1.96506 1.94562 1.21070 0.91578 0.99007 1.02854 1.17738 0.91411 0.89997 1.02362 1.19701 1.04961 0.99557 1.06873 1.23166 0.94833 0.87822 0.94175 1.68645 1.09531 1.27581 1.28194 1.20331 0.89449 0.92664 0.85394 1.19724 1.09304 1.02447 1.14504 0.89019 1.27134 0.98890 1.00938 0.93232 1.70201 1.24638 1.30612 1.10485 0.84932 0.76623 0.76325 0.80159 1.18285 1.18454 1.17916 1.69301 1.28290 1.02663 1.25303 1.23189 0.88309 0.94024 0.93709 0.93285 0.93250 0.90970 0.90364 0.90431 0.92765 0.92490 0.90116 0.90325 0.81467 0.81600 0.84853 0.82435 0.90249 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.11 -1.73 5.93 30.59 0.18 -1.55 16 3 C -0.12 -2.74 5.58 30.59 0.17 -2.57 16 4 C 0.05 1.15 4.74 71.98 0.34 1.49 16 5 O -0.33 -10.79 8.56 -91.24 -0.78 -11.57 16 6 C 0.11 3.50 6.62 22.82 0.15 3.65 16 7 C -0.17 -3.87 9.03 22.33 0.20 -3.66 16 8 C -0.12 -2.58 10.02 22.38 0.22 -2.36 16 9 C 0.05 1.46 7.29 22.34 0.16 1.62 16 10 F -0.15 -4.11 17.26 44.97 0.78 -3.33 16 11 C -0.13 -4.07 9.53 22.57 0.22 -3.85 16 12 C -0.01 -0.47 5.53 -19.93 -0.11 -0.58 16 13 C -0.30 -13.65 5.31 -19.64 -0.10 -13.76 16 14 C 0.17 8.18 10.86 85.29 0.93 9.10 16 15 N -0.62 -34.24 10.33 -193.14 -2.00 -36.24 16 16 C 0.36 21.03 7.35 134.87 0.99 22.02 16 17 C -0.43 -24.11 9.35 23.41 0.22 -23.89 16 18 H 0.09 5.00 7.85 -2.91 -0.02 4.98 16 19 C 0.02 1.15 5.50 85.32 0.47 1.62 16 20 N -0.74 -39.39 11.40 21.85 0.25 -39.15 16 21 Si 1.00 37.70 29.56 68.60 2.03 39.73 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 23 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 25 N -0.54 -31.09 7.82 -193.15 -1.51 -32.60 16 26 C 0.18 9.19 10.11 85.29 0.86 10.05 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.42 7.66 -2.39 -0.02 1.40 16 35 H 0.08 1.40 7.66 -2.38 -0.02 1.38 16 36 H 0.17 2.59 6.29 -2.91 -0.02 2.57 16 37 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 39 H 0.16 6.29 8.06 -2.91 -0.02 6.27 16 40 H 0.29 13.55 8.29 -92.71 -0.77 12.78 16 41 H 0.14 6.39 7.76 -2.91 -0.02 6.36 16 Total: -1.00 -68.85 355.61 5.43 -63.42 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 1.05 Total: 24.20 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.62 Total: -4.47 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -3.26 Total: -107.98 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.78 Total: -11.57 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -68.85 5.43 -63.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243237519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.352 kcal (2) G-P(sol) polarization free energy of solvation -68.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds