Wall clock time and date at job start Tue Mar 31 2020 10:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38015 * 119.95277 * 2 1 4 4 C 1.38166 * 120.27838 * 179.97438 * 3 2 1 5 5 C 1.39501 * 120.18855 * 0.02562 * 4 3 2 6 6 C 1.48412 * 120.04506 * 180.02562 * 5 4 3 7 7 C 1.39329 * 120.11916 * 179.72528 * 6 5 4 8 8 C 1.38021 * 119.88000 * 179.76597 * 7 6 5 9 9 C 1.38322 * 120.11550 * 0.50468 * 8 7 6 10 10 C 1.38315 * 120.24599 * 359.74423 * 9 8 7 11 11 C 1.38024 * 120.11865 * 0.02562 * 10 9 8 12 12 C 1.39017 * 119.91141 * 359.74392 * 5 4 3 13 13 C 1.39519 * 119.71777 * 0.50830 * 12 5 4 14 14 C 1.47807 * 120.09622 * 179.76972 * 13 12 5 15 15 N 1.32852 * 120.25071 * 235.18601 * 14 13 12 16 16 C 1.32004 * 120.08347 * 180.27580 * 15 14 13 17 17 C 1.39199 * 120.58391 * 359.71998 * 16 15 14 18 18 N 1.31600 * 120.50467 * 359.97438 * 17 16 15 19 19 C 1.33979 * 119.89761 * 0.02562 * 18 17 16 20 20 C 1.40797 * 120.28240 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99869 * 190.40320 * 20 19 18 22 22 C 1.40170 * 120.00440 * 10.40406 * 20 19 18 23 23 N 1.30682 * 119.99844 * 191.92870 * 22 20 19 24 24 Si 1.86795 * 119.99916 * 12.19625 * 22 20 19 25 25 H 1.48504 * 109.47631 * 274.92055 * 24 22 20 26 26 H 1.48502 * 109.47051 * 34.92446 * 24 22 20 27 27 H 1.48504 * 109.47286 * 154.91901 * 24 22 20 28 28 H 1.09004 * 109.46905 * 264.47566 * 1 2 3 29 29 H 1.08995 * 109.46882 * 24.47759 * 1 2 3 30 30 H 1.08999 * 109.46921 * 144.47792 * 1 2 3 31 31 H 1.07995 * 119.86148 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.90752 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.06027 * 359.97438 * 7 6 5 34 34 H 1.07995 * 119.94223 * 180.24902 * 8 7 6 35 35 H 1.08002 * 119.87776 * 179.76329 * 9 8 7 36 36 H 1.08003 * 119.94338 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.06021 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.14452 * 180.27478 * 12 5 4 39 39 H 1.07998 * 119.70691 * 179.70055 * 16 15 14 40 40 H 1.07999 * 119.74796 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99692 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1958 0.0000 4 6 3.5778 1.2037 0.0005 5 6 4.2861 0.0019 0.0005 6 6 5.7702 0.0140 0.0017 7 6 6.4792 -1.1854 0.0075 8 6 7.8593 -1.1683 0.0036 9 6 8.5385 0.0366 0.0046 10 6 7.8397 1.2303 0.0041 11 6 6.4595 1.2248 0.0031 12 6 3.6000 -1.2072 0.0054 13 6 2.2048 -1.2107 -0.0005 14 6 1.4669 -2.4914 -0.0006 15 7 0.5690 -2.7464 -0.9460 16 6 -0.0921 -3.8890 -0.9397 17 6 0.1457 -4.8394 0.0491 18 7 1.0342 -4.6133 0.9932 19 6 1.7165 -3.4603 1.0058 20 6 2.6686 -3.2097 2.0123 21 1 3.0930 -2.2225 2.1204 22 6 3.0657 -4.2415 2.8741 23 7 3.7626 -3.9666 3.9448 24 14 2.6051 -6.0101 2.4879 25 1 1.2440 -6.2926 3.0104 26 1 2.6237 -6.2167 1.0175 27 1 3.5816 -6.9272 3.1289 28 1 -0.3633 -0.0989 1.0229 29 1 -0.3633 0.9353 -0.4258 30 1 -0.3633 -0.8364 -0.5971 31 1 1.6531 2.1293 -0.0004 32 1 4.1110 2.1429 0.0009 33 1 5.9498 -2.1268 0.0115 34 1 8.4098 -2.0974 0.0040 35 1 9.6185 0.0455 0.0054 36 1 8.3750 2.1683 0.0052 37 1 5.9148 2.1574 0.0023 38 1 4.1446 -2.1398 0.0099 39 1 -0.8241 -4.0880 -1.7084 40 1 -0.4032 -5.7695 0.0415 41 1 4.0371 -4.6806 4.5414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244057796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:54 Heat of formation + Delta-G solvation = 73.059166 kcal Electronic energy + Delta-G solvation = -25155.750470 eV Core-core repulsion = 21771.193320 eV Total energy + Delta-G solvation = -3384.557150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.88171 -39.15271 -37.84923 -34.29491 -33.53543 -32.57037 -31.88902 -30.80853 -29.90608 -29.15482 -26.45821 -25.98252 -23.78629 -22.59499 -22.33089 -21.93082 -20.77797 -19.73124 -17.96098 -17.27289 -16.39346 -15.94132 -15.40996 -15.07276 -14.98686 -14.65058 -14.04969 -13.98878 -13.66790 -13.27577 -13.19263 -13.16118 -12.85501 -12.75806 -12.71886 -12.27047 -11.81373 -11.76526 -11.52336 -11.28398 -11.18940 -11.10835 -11.00404 -10.71213 -10.54213 -10.23648 -9.80817 -9.58597 -9.28396 -9.17122 -8.76627 -8.50036 -7.97321 -7.64709 -7.38420 -7.16533 -4.95379 1.04090 1.59148 1.74095 2.20066 2.32933 2.60559 3.27161 3.34096 3.42624 3.92970 4.16279 4.34390 4.49135 4.89286 4.96152 5.10870 5.20345 5.23994 5.28238 5.40367 5.52526 5.59857 5.61532 5.64416 5.72968 5.88355 5.91434 6.06992 6.14169 6.19014 6.19676 6.21108 6.36399 6.41627 6.54490 6.57586 6.64615 6.65930 6.70576 6.77518 6.90347 6.95987 7.13567 7.17673 7.31457 7.40897 7.53743 7.86654 8.15521 8.23391 8.81437 9.27009 9.69966 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.005380 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.152484 B = 5203.054496 C = 6871.795779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.064 4.064 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.066 4.066 6 C -0.026 4.026 7 C -0.109 4.109 8 C -0.117 4.117 9 C -0.131 4.131 10 C -0.122 4.122 11 C -0.118 4.118 12 C -0.074 4.074 13 C 0.021 3.979 14 C -0.002 4.002 15 N -0.400 5.400 16 C -0.121 4.121 17 C 0.112 3.888 18 N -0.541 5.541 19 C 0.203 3.797 20 C -0.376 4.376 21 H 0.109 0.891 22 C 0.079 3.921 23 N -0.771 5.771 24 Si 0.997 3.003 25 H -0.272 1.272 26 H -0.265 1.265 27 H -0.324 1.324 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 6.567 -5.149 9.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.066 4.066 6 C -0.026 4.026 7 C -0.127 4.127 8 C -0.135 4.135 9 C -0.149 4.149 10 C -0.140 4.140 11 C -0.136 4.136 12 C -0.093 4.093 13 C 0.020 3.980 14 C -0.151 4.151 15 N -0.112 5.112 16 C -0.280 4.280 17 C -0.056 4.056 18 N -0.262 5.262 19 C 0.080 3.920 20 C -0.406 4.406 21 H 0.127 0.873 22 C -0.148 4.148 23 N -0.392 5.392 24 Si 0.831 3.169 25 H -0.198 1.198 26 H -0.191 1.191 27 H -0.256 1.256 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.132 6.571 -4.909 9.184 hybrid contribution -0.207 -0.805 0.114 0.839 sum 3.926 5.766 -4.795 8.465 Atomic orbital electron populations 1.20880 0.91567 1.02804 1.02192 1.20045 0.96055 0.92074 0.98344 1.20736 0.93783 0.97030 1.02963 1.21043 0.93917 0.96783 1.01694 1.18553 0.91083 0.93440 1.03521 1.18851 0.92029 0.93240 0.98512 1.21388 0.94140 0.98160 0.99003 1.21080 0.94255 0.97976 1.00161 1.21116 0.99543 0.92680 1.01517 1.21006 0.94085 0.97914 1.01006 1.21193 0.94132 0.97392 1.00861 1.21330 0.93280 0.97223 0.97458 1.18041 0.91709 0.90702 0.97591 1.19871 1.02162 0.96200 0.96876 1.67682 1.02873 1.18836 1.21763 1.22455 1.07778 0.93772 1.03956 1.23154 0.93373 0.98278 0.90769 1.67536 1.11300 1.21404 1.25951 1.19176 0.92644 0.87728 0.92449 1.19710 1.15063 0.99310 1.06511 0.87276 1.26552 0.91094 1.04841 0.92289 1.69599 1.23760 1.37699 1.08140 0.84581 0.76675 0.76285 0.79396 1.19830 1.19102 1.25646 0.92075 0.92668 0.89361 0.86490 0.86502 0.85326 0.86125 0.86501 0.86348 0.85943 0.85392 0.84698 0.84654 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.52 36.01 0.34 -1.71 16 2 C -0.06 -1.22 5.92 -104.14 -0.62 -1.84 16 3 C -0.13 -2.08 9.65 -39.69 -0.38 -2.47 16 4 C -0.12 -1.87 9.43 -39.14 -0.37 -2.23 16 5 C -0.07 -1.18 5.87 -104.95 -0.62 -1.80 16 6 C -0.03 -0.43 5.88 -104.90 -0.62 -1.05 16 7 C -0.11 -1.75 9.42 -39.26 -0.37 -2.12 16 8 C -0.12 -1.61 10.03 -39.63 -0.40 -2.00 16 9 C -0.13 -1.61 10.04 -39.52 -0.40 -2.01 16 10 C -0.12 -1.50 10.03 -39.63 -0.40 -1.90 16 11 C -0.12 -1.64 9.43 -39.26 -0.37 -2.01 16 12 C -0.07 -1.50 7.22 -38.82 -0.28 -1.78 16 13 C 0.02 0.45 4.93 -104.95 -0.52 -0.07 16 14 C 0.00 -0.04 5.67 -82.11 -0.47 -0.51 16 15 N -0.40 -8.95 8.39 -8.97 -0.08 -9.02 16 16 C -0.12 -2.48 11.22 -17.12 -0.19 -2.67 16 17 C 0.11 2.35 11.22 -17.29 -0.19 2.16 16 18 N -0.54 -13.15 5.15 -10.73 -0.06 -13.21 16 19 C 0.20 5.06 6.27 -84.56 -0.53 4.53 16 20 C -0.38 -9.62 8.50 -37.89 -0.32 -9.94 16 21 H 0.11 2.88 6.14 -52.48 -0.32 2.56 16 22 C 0.08 1.97 5.52 -17.32 -0.10 1.88 16 23 N -0.77 -19.28 13.92 55.56 0.77 -18.51 16 24 Si 1.00 22.88 25.44 -169.99 -4.32 18.55 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.31 6.63 56.52 0.37 -5.93 16 27 H -0.32 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.79 8.05 -51.93 -0.42 0.38 16 30 H 0.09 1.68 5.75 -51.93 -0.30 1.38 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.12 1.52 6.19 -52.48 -0.32 1.20 16 33 H 0.13 2.13 6.20 -52.48 -0.33 1.80 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.12 1.45 6.20 -52.49 -0.33 1.13 16 38 H 0.13 2.65 5.82 -52.49 -0.31 2.35 16 39 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 40 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -28.32 338.63 -9.80 -38.12 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.44 Total: 6.49 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -6.79 Total: -27.53 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.64 Total: -40.74 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.32 Total: 18.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.32 -9.80 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244057796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.184 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds