Wall clock time and date at job start Tue Mar 31 2020 10:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38015 * 119.95277 * 2 1 4 4 C 1.38166 * 120.27838 * 179.97438 * 3 2 1 5 5 C 1.39501 * 120.18855 * 0.02562 * 4 3 2 6 6 C 1.48412 * 120.04506 * 180.02562 * 5 4 3 7 7 C 1.39329 * 120.11916 * 179.72528 * 6 5 4 8 8 C 1.38021 * 119.88000 * 179.76597 * 7 6 5 9 9 C 1.38322 * 120.11550 * 0.50468 * 8 7 6 10 10 C 1.38315 * 120.24599 * 359.74423 * 9 8 7 11 11 C 1.38024 * 120.11865 * 0.02562 * 10 9 8 12 12 C 1.39017 * 119.91141 * 359.74392 * 5 4 3 13 13 C 1.39519 * 119.71777 * 0.50830 * 12 5 4 14 14 C 1.47807 * 120.09622 * 179.76972 * 13 12 5 15 15 N 1.32852 * 120.25071 * 235.18601 * 14 13 12 16 16 C 1.32004 * 120.08347 * 180.27580 * 15 14 13 17 17 C 1.39199 * 120.58391 * 359.71998 * 16 15 14 18 18 N 1.31600 * 120.50467 * 359.97438 * 17 16 15 19 19 C 1.33979 * 119.89761 * 0.02562 * 18 17 16 20 20 C 1.40797 * 120.28240 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99869 * 190.40320 * 20 19 18 22 22 C 1.40170 * 120.00440 * 10.40406 * 20 19 18 23 23 N 1.30682 * 119.99844 * 191.92870 * 22 20 19 24 24 Si 1.86795 * 119.99916 * 12.19625 * 22 20 19 25 25 H 1.48504 * 109.47631 * 274.92055 * 24 22 20 26 26 H 1.48502 * 109.47051 * 34.92446 * 24 22 20 27 27 H 1.48504 * 109.47286 * 154.91901 * 24 22 20 28 28 H 1.09004 * 109.46905 * 264.47566 * 1 2 3 29 29 H 1.08995 * 109.46882 * 24.47759 * 1 2 3 30 30 H 1.08999 * 109.46921 * 144.47792 * 1 2 3 31 31 H 1.07995 * 119.86148 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.90752 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.06027 * 359.97438 * 7 6 5 34 34 H 1.07995 * 119.94223 * 180.24902 * 8 7 6 35 35 H 1.08002 * 119.87776 * 179.76329 * 9 8 7 36 36 H 1.08003 * 119.94338 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.06021 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.14452 * 180.27478 * 12 5 4 39 39 H 1.07998 * 119.70691 * 179.70055 * 16 15 14 40 40 H 1.07999 * 119.74796 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99692 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1958 0.0000 4 6 3.5778 1.2037 0.0005 5 6 4.2861 0.0019 0.0005 6 6 5.7702 0.0140 0.0017 7 6 6.4792 -1.1854 0.0075 8 6 7.8593 -1.1683 0.0036 9 6 8.5385 0.0366 0.0046 10 6 7.8397 1.2303 0.0041 11 6 6.4595 1.2248 0.0031 12 6 3.6000 -1.2072 0.0054 13 6 2.2048 -1.2107 -0.0005 14 6 1.4669 -2.4914 -0.0006 15 7 0.5690 -2.7464 -0.9460 16 6 -0.0921 -3.8890 -0.9397 17 6 0.1457 -4.8394 0.0491 18 7 1.0342 -4.6133 0.9932 19 6 1.7165 -3.4603 1.0058 20 6 2.6686 -3.2097 2.0123 21 1 3.0930 -2.2225 2.1204 22 6 3.0657 -4.2415 2.8741 23 7 3.7626 -3.9666 3.9448 24 14 2.6051 -6.0101 2.4879 25 1 1.2440 -6.2926 3.0104 26 1 2.6237 -6.2167 1.0175 27 1 3.5816 -6.9272 3.1289 28 1 -0.3633 -0.0989 1.0229 29 1 -0.3633 0.9353 -0.4258 30 1 -0.3633 -0.8364 -0.5971 31 1 1.6531 2.1293 -0.0004 32 1 4.1110 2.1429 0.0009 33 1 5.9498 -2.1268 0.0115 34 1 8.4098 -2.0974 0.0040 35 1 9.6185 0.0455 0.0054 36 1 8.3750 2.1683 0.0052 37 1 5.9148 2.1574 0.0023 38 1 4.1446 -2.1398 0.0099 39 1 -0.8241 -4.0880 -1.7084 40 1 -0.4032 -5.7695 0.0415 41 1 4.0371 -4.6806 4.5414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244057796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:53 Heat of formation + Delta-G solvation = 60.106411 kcal Electronic energy + Delta-G solvation = -25156.312144 eV Core-core repulsion = 21771.193320 eV Total energy + Delta-G solvation = -3385.118823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47882 -40.50901 -39.14198 -36.12585 -35.02745 -34.13269 -33.51066 -31.95207 -31.11789 -30.69343 -28.19871 -27.36006 -25.30756 -24.15620 -23.53775 -23.46671 -22.10697 -21.09393 -19.83895 -18.48363 -18.17072 -17.36783 -17.04993 -16.45534 -16.23924 -16.07594 -15.59981 -15.37424 -15.00844 -14.79495 -14.71462 -14.57693 -14.37154 -13.98236 -13.92968 -13.79050 -13.53369 -13.36597 -12.94214 -12.92556 -12.81185 -12.51531 -12.32180 -12.20032 -11.88303 -11.54711 -11.53215 -11.47042 -11.09139 -10.44167 -10.09070 -9.83706 -9.66393 -9.27519 -9.04382 -8.73510 -6.82169 -0.19958 0.16203 0.51873 0.56377 0.82959 1.07544 1.39068 1.49134 1.56362 2.31570 2.50336 2.72727 3.17541 3.45923 3.54515 3.74774 3.88794 3.94762 4.05313 4.14808 4.17560 4.22730 4.28144 4.37143 4.46449 4.53813 4.59825 4.69371 4.71018 4.78442 4.81215 4.94594 4.97581 5.09184 5.11780 5.12184 5.23986 5.35540 5.42384 5.48060 5.60904 5.62177 5.69785 5.84279 5.89205 5.93138 6.10181 6.15985 6.34525 6.38390 7.02153 7.48136 7.88863 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.005380 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.152484 B = 5203.054496 C = 6871.795779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.119 4.119 4 C -0.110 4.110 5 C -0.070 4.070 6 C -0.055 4.055 7 C -0.137 4.137 8 C -0.127 4.127 9 C -0.124 4.124 10 C -0.118 4.118 11 C -0.118 4.118 12 C -0.096 4.096 13 C -0.013 4.013 14 C -0.009 4.009 15 N -0.411 5.411 16 C -0.104 4.104 17 C 0.099 3.901 18 N -0.562 5.562 19 C 0.191 3.809 20 C -0.406 4.406 21 H 0.086 0.914 22 C 0.053 3.947 23 N -0.803 5.803 24 Si 1.044 2.956 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.312 1.312 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 8.694 -6.407 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.128 4.128 5 C -0.070 4.070 6 C -0.055 4.055 7 C -0.155 4.155 8 C -0.145 4.145 9 C -0.142 4.142 10 C -0.136 4.136 11 C -0.136 4.136 12 C -0.115 4.115 13 C -0.014 4.014 14 C -0.156 4.156 15 N -0.123 5.123 16 C -0.263 4.263 17 C -0.067 4.067 18 N -0.284 5.284 19 C 0.067 3.933 20 C -0.437 4.437 21 H 0.104 0.896 22 C -0.169 4.169 23 N -0.426 5.426 24 Si 0.877 3.123 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.243 1.243 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.120 0.880 39 H 0.194 0.806 40 H 0.195 0.805 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.353 8.705 -6.165 11.521 hybrid contribution -0.310 -1.407 0.303 1.472 sum 4.043 7.298 -5.862 10.197 Atomic orbital electron populations 1.20831 0.90635 1.03768 1.01564 1.20322 0.96971 0.92176 0.98922 1.21162 0.94114 0.97473 1.00936 1.21485 0.94106 0.97405 0.99804 1.18850 0.92352 0.93289 1.02549 1.18961 0.91343 0.94464 1.00749 1.21401 0.95515 0.97553 1.01064 1.21322 0.93292 0.99758 1.00103 1.21555 1.01298 0.91919 0.99406 1.21475 0.93555 0.99451 0.99070 1.21493 0.95161 0.96996 0.99924 1.21228 0.93235 0.97534 0.99475 1.18200 0.92142 0.91049 1.00016 1.20173 1.02193 0.96869 0.96362 1.67823 1.03199 1.19768 1.21551 1.23249 1.06707 0.92529 1.03864 1.23866 0.92759 1.00046 0.90016 1.67498 1.12122 1.21347 1.27433 1.19341 0.92629 0.88618 0.92713 1.19539 1.16985 0.98800 1.08365 0.89640 1.27009 0.91105 1.06672 0.92159 1.69594 1.25402 1.38641 1.08962 0.83907 0.76339 0.74086 0.78008 1.20218 1.20804 1.24303 0.92862 0.89257 0.91308 0.82555 0.82640 0.87942 0.84793 0.83142 0.82565 0.83576 0.87998 0.80592 0.80513 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.80 9.52 71.24 0.68 -3.12 16 2 C -0.08 -3.16 5.92 -19.55 -0.12 -3.27 16 3 C -0.12 -3.67 9.65 22.20 0.21 -3.46 16 4 C -0.11 -3.36 9.43 22.56 0.21 -3.15 16 5 C -0.07 -2.59 5.87 -20.08 -0.12 -2.71 16 6 C -0.06 -1.83 5.88 -20.04 -0.12 -1.95 16 7 C -0.14 -4.71 9.42 22.48 0.21 -4.50 16 8 C -0.13 -3.49 10.03 22.24 0.22 -3.27 16 9 C -0.12 -2.74 10.04 22.31 0.22 -2.51 16 10 C -0.12 -2.49 10.03 22.24 0.22 -2.27 16 11 C -0.12 -3.01 9.43 22.48 0.21 -2.80 16 12 C -0.10 -4.19 7.22 22.77 0.16 -4.02 16 13 C -0.01 -0.57 4.93 -20.07 -0.10 -0.67 16 14 C -0.01 -0.44 5.67 42.43 0.24 -0.19 16 15 N -0.41 -18.48 8.39 -182.30 -1.53 -20.01 16 16 C -0.10 -4.12 11.22 84.90 0.95 -3.16 16 17 C 0.10 4.04 11.22 84.96 0.95 4.99 16 18 N -0.56 -27.78 5.15 -187.85 -0.97 -28.75 16 19 C 0.19 9.99 6.27 40.35 0.25 10.24 16 20 C -0.41 -22.32 8.50 23.37 0.20 -22.12 16 21 H 0.09 4.97 6.14 -2.91 -0.02 4.95 16 22 C 0.05 2.81 5.52 85.33 0.47 3.29 16 23 N -0.80 -42.36 13.92 21.86 0.30 -42.05 16 24 Si 1.04 48.69 25.44 68.60 1.74 50.44 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.28 -13.65 6.63 99.48 0.66 -12.99 16 27 H -0.31 -13.61 7.11 99.48 0.71 -12.91 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.09 2.35 8.05 -2.39 -0.02 2.33 16 30 H 0.07 2.60 5.75 -2.39 -0.01 2.59 16 31 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.16 3.45 6.19 -2.91 -0.02 3.43 16 33 H 0.10 3.92 6.20 -2.91 -0.02 3.90 16 34 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.15 2.90 6.20 -2.91 -0.02 2.88 16 38 H 0.10 4.83 5.82 -2.91 -0.02 4.81 16 39 H 0.18 5.42 8.06 -2.91 -0.02 5.40 16 40 H 0.18 5.62 8.06 -2.91 -0.02 5.60 16 41 H 0.30 14.34 8.29 -92.70 -0.77 13.57 16 Total: -1.00 -66.27 338.63 5.56 -60.71 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 1.02 Total: 24.31 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 4.98 Total: -44.66 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -2.19 Total: -90.80 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.74 Total: 50.44 kcal Total: -66.27 5.56 -60.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244057796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.821 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds