Wall clock time and date at job start Tue Mar 31 2020 10:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38116 * 119.93889 * 2 1 4 4 C 1.38089 * 120.25338 * 180.02562 * 3 2 1 5 5 C 1.39437 * 120.13092 * 359.97438 * 4 3 2 6 6 C 1.48403 * 120.05842 * 180.02562 * 5 4 3 7 7 C 1.39337 * 120.12303 * 179.72241 * 6 5 4 8 8 C 1.38018 * 119.88050 * 179.77015 * 7 6 5 9 9 C 1.38322 * 120.11830 * 0.53533 * 8 7 6 10 10 C 1.38322 * 120.24407 * 359.69746 * 9 8 7 11 11 C 1.38023 * 120.11879 * 0.04168 * 10 9 8 12 12 C 1.39107 * 119.88386 * 359.77059 * 5 4 3 13 13 C 1.39211 * 119.74727 * 0.50370 * 12 5 4 14 14 C 1.48315 * 120.06890 * 179.74432 * 13 12 5 15 15 C 1.40027 * 119.98289 * 128.20350 * 14 13 12 16 16 N 1.32182 * 120.29589 * 180.02562 * 15 14 13 17 17 C 1.31883 * 120.27858 * 359.74961 * 16 15 14 18 18 C 1.40819 * 119.96491 * 0.52650 * 17 16 15 19 19 C 1.41333 * 120.14633 * 179.72676 * 18 17 16 20 20 H 1.08008 * 120.00083 * 6.63493 * 19 18 17 21 21 C 1.40054 * 120.00001 * 186.63473 * 19 18 17 22 22 N 1.30737 * 119.99707 * 183.35671 * 21 19 18 23 23 Si 1.86793 * 119.99959 * 3.35958 * 21 19 18 24 24 H 1.48504 * 109.47110 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47047 * 299.99811 * 23 21 19 26 26 H 1.48496 * 109.47412 * 59.99920 * 23 21 19 27 27 N 1.32509 * 119.98405 * 308.22757 * 14 13 12 28 28 H 1.09007 * 109.47175 * 264.39986 * 1 2 3 29 29 H 1.09001 * 109.47507 * 24.39926 * 1 2 3 30 30 H 1.08993 * 109.47275 * 144.40118 * 1 2 3 31 31 H 1.07996 * 119.87257 * 0.04431 * 3 2 1 32 32 H 1.07996 * 119.93592 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.05697 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.94049 * 180.25297 * 8 7 6 35 35 H 1.07998 * 119.87673 * 179.72763 * 9 8 7 36 36 H 1.07996 * 119.94157 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.05896 * 179.97438 * 11 10 9 38 38 H 1.07996 * 120.12484 * 180.24951 * 12 5 4 39 39 H 1.07999 * 119.85339 * 0.02562 * 15 14 13 40 40 H 1.08005 * 120.01948 * 180.26006 * 17 16 15 41 41 H 0.97000 * 119.99723 * 354.88383 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1969 0.0000 4 6 3.5772 1.2044 -0.0005 5 6 4.2837 0.0023 -0.0005 6 6 5.7677 0.0124 -0.0005 7 6 6.4751 -1.1881 0.0053 8 6 7.8552 -1.1729 0.0005 9 6 8.5361 0.0311 0.0010 10 6 7.8390 1.2258 0.0001 11 6 6.4587 1.2222 -0.0005 12 6 3.5951 -1.2063 0.0048 13 6 2.2030 -1.2082 -0.0005 14 6 1.4616 -2.4928 -0.0005 15 6 0.4586 -2.7219 0.9493 16 7 -0.2057 -3.8647 0.9552 17 6 0.0673 -4.7971 0.0633 18 6 1.0778 -4.5811 -0.8933 19 6 1.3774 -5.5800 -1.8472 20 1 0.7623 -6.4654 -1.9134 21 6 2.4719 -5.4218 -2.7066 22 7 2.7103 -6.3137 -3.6323 23 14 3.5908 -3.9366 -2.5303 24 1 4.6662 -4.0028 -3.5523 25 1 2.7997 -2.6949 -2.7246 26 1 4.1958 -3.9308 -1.1742 27 7 1.7491 -3.4233 -0.8991 28 1 -0.3634 -0.1003 1.0228 29 1 -0.3634 0.9359 -0.4245 30 1 -0.3633 -0.8355 -0.5982 31 1 1.6532 2.1303 0.0007 32 1 4.1109 2.1433 -0.0009 33 1 5.9444 -2.1286 0.0094 34 1 8.4045 -2.1029 0.0009 35 1 9.6161 0.0384 0.0017 36 1 8.3756 2.1630 0.0002 37 1 5.9153 2.1556 -0.0008 38 1 4.1384 -2.1397 0.0089 39 1 0.2266 -1.9615 1.6803 40 1 -0.4810 -5.7276 0.0694 41 1 2.1750 -7.1214 -3.6768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244059470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:56 Heat of formation + Delta-G solvation = 65.770360 kcal Electronic energy + Delta-G solvation = -24974.603613 eV Core-core repulsion = 21589.730397 eV Total energy + Delta-G solvation = -3384.873216 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.11340 -39.31578 -38.14355 -34.37773 -33.74164 -32.97613 -31.72585 -30.96794 -30.21659 -29.30006 -26.40291 -26.00598 -24.14577 -22.66282 -22.63121 -21.82568 -21.02759 -19.86023 -18.62679 -17.48670 -16.26586 -15.95273 -15.74000 -15.39383 -15.30001 -14.64946 -14.28529 -14.10539 -13.70135 -13.48366 -13.39814 -13.18625 -13.05710 -12.97282 -12.88437 -12.52080 -12.00546 -11.93073 -11.60635 -11.42830 -11.28749 -11.17651 -11.06634 -10.90051 -10.54556 -9.93979 -9.85770 -9.51102 -9.41399 -9.20259 -8.95967 -8.81612 -8.04071 -7.81691 -7.74058 -7.27048 -5.03658 0.75995 1.38599 1.40366 1.93778 2.27973 2.51595 3.44134 3.52983 3.69211 3.86178 4.16150 4.25236 4.45987 4.63609 4.71539 4.87390 4.93543 5.01861 5.09121 5.24226 5.28869 5.32476 5.42061 5.46785 5.57099 5.62358 5.82122 5.85707 5.87807 5.93469 5.97259 6.03903 6.10995 6.24622 6.31285 6.38277 6.42440 6.49309 6.51937 6.60191 6.74382 6.84580 6.88843 6.97764 7.13937 7.18621 7.22722 7.77595 7.94312 8.31087 8.73121 9.21163 9.76845 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.005275 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.070097 B = 5306.771125 C = 7055.283302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.062 4.062 6 C -0.034 4.034 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.115 4.115 12 C -0.080 4.080 13 C -0.020 4.020 14 C 0.169 3.831 15 C -0.100 4.100 16 N -0.419 5.419 17 C -0.042 4.042 18 C 0.200 3.800 19 C -0.451 4.451 20 H 0.090 0.910 21 C 0.043 3.957 22 N -0.789 5.789 23 Si 1.140 2.860 24 H -0.325 1.325 25 H -0.271 1.271 26 H -0.290 1.290 27 N -0.532 5.532 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 13.875 5.611 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.062 4.062 6 C -0.034 4.034 7 C -0.131 4.131 8 C -0.133 4.133 9 C -0.144 4.144 10 C -0.138 4.138 11 C -0.133 4.133 12 C -0.098 4.098 13 C -0.022 4.022 14 C 0.025 3.975 15 C -0.256 4.256 16 N -0.129 5.129 17 C -0.214 4.214 18 C 0.075 3.925 19 C -0.483 4.483 20 H 0.108 0.892 21 C -0.180 4.180 22 N -0.410 5.410 23 Si 0.974 3.026 24 H -0.258 1.258 25 H -0.198 1.198 26 H -0.219 1.219 27 N -0.255 5.255 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.815 14.481 4.904 17.170 hybrid contribution -1.439 -1.150 0.576 1.930 sum 6.376 13.331 5.480 15.761 Atomic orbital electron populations 1.20885 0.90891 1.02565 1.02680 1.19982 0.96251 0.91853 0.98161 1.20800 0.93800 0.97109 1.02222 1.21135 0.93996 0.96994 1.00294 1.18635 0.91424 0.93311 1.02807 1.18820 0.91735 0.93433 0.99429 1.21413 0.94387 0.98028 0.99276 1.21121 0.94121 0.98233 0.99829 1.21174 0.99763 0.92589 1.00839 1.21044 0.94044 0.98057 1.00696 1.21195 0.94206 0.97261 1.00591 1.21425 0.93271 0.97709 0.97410 1.18418 0.92422 0.91246 1.00094 1.20249 0.93173 0.92015 0.92100 1.22474 1.01388 0.97633 1.04109 1.67723 1.23329 1.00619 1.21269 1.23160 1.02377 0.99264 0.96582 1.19441 0.90216 0.90088 0.92748 1.20830 1.11026 1.03533 1.12910 0.89207 1.27820 0.97388 1.03418 0.89383 1.70635 1.37312 1.07471 1.25558 0.82126 0.72620 0.73631 0.74229 1.25824 1.19798 1.21859 1.67553 1.30719 1.02623 1.24574 0.90737 0.91924 0.91033 0.85733 0.85877 0.85483 0.85802 0.86212 0.86095 0.85775 0.85246 0.84618 0.84256 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 8.44 36.00 0.30 -1.32 16 2 C -0.06 -0.99 5.88 -104.22 -0.61 -1.60 16 3 C -0.12 -1.64 9.65 -39.68 -0.38 -2.02 16 4 C -0.11 -1.43 9.42 -39.19 -0.37 -1.80 16 5 C -0.06 -0.98 5.87 -104.94 -0.62 -1.59 16 6 C -0.03 -0.50 5.88 -104.90 -0.62 -1.11 16 7 C -0.11 -1.65 9.43 -39.25 -0.37 -2.02 16 8 C -0.12 -1.42 10.03 -39.63 -0.40 -1.81 16 9 C -0.13 -1.35 10.04 -39.52 -0.40 -1.75 16 10 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 11 C -0.11 -1.37 9.43 -39.25 -0.37 -1.74 16 12 C -0.08 -1.48 8.75 -38.90 -0.34 -1.82 16 13 C -0.02 -0.39 5.59 -104.94 -0.59 -0.98 16 14 C 0.17 3.75 5.50 -82.76 -0.46 3.30 16 15 C -0.10 -2.13 9.27 -16.73 -0.16 -2.28 16 16 N -0.42 -9.58 10.47 -12.06 -0.13 -9.71 16 17 C -0.04 -0.99 10.97 -16.55 -0.18 -1.18 16 18 C 0.20 5.07 6.38 -84.84 -0.54 4.53 16 19 C -0.45 -11.72 9.59 -37.72 -0.36 -12.09 16 20 H 0.09 2.27 8.05 -52.48 -0.42 1.85 16 21 C 0.04 1.14 5.52 -17.34 -0.10 1.04 16 22 N -0.79 -20.71 13.65 55.55 0.76 -19.95 16 23 Si 1.14 27.89 24.85 -169.99 -4.22 23.66 16 24 H -0.33 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 26 H -0.29 -6.87 6.27 56.52 0.35 -6.51 16 27 N -0.53 -13.27 4.63 -7.50 -0.03 -13.30 16 28 H 0.07 0.97 7.23 -51.93 -0.38 0.60 16 29 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 30 H 0.07 1.21 6.89 -51.93 -0.36 0.85 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.28 6.19 -52.49 -0.33 0.95 16 33 H 0.13 1.95 6.20 -52.49 -0.33 1.63 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.20 6.20 -52.48 -0.33 0.88 16 38 H 0.13 2.54 4.94 -52.49 -0.26 2.28 16 39 H 0.14 2.53 6.81 -52.49 -0.36 2.17 16 40 H 0.14 2.99 8.06 -52.48 -0.42 2.57 16 41 H 0.29 7.11 8.72 -40.82 -0.36 6.75 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -28.92 338.87 -9.97 -38.89 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.51 Total: 3.22 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -6.94 Total: -27.91 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.60 Total: -42.96 kcal Atomic # 14 Polarization: 27.89 SS G_CDS: -4.22 Total: 23.66 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.92 -9.97 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244059470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.657 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds