Wall clock time and date at job start Tue Mar 31 2020 10:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38116 * 119.93889 * 2 1 4 4 C 1.38089 * 120.25338 * 180.02562 * 3 2 1 5 5 C 1.39437 * 120.13092 * 359.97438 * 4 3 2 6 6 C 1.48403 * 120.05842 * 180.02562 * 5 4 3 7 7 C 1.39337 * 120.12303 * 179.72241 * 6 5 4 8 8 C 1.38018 * 119.88050 * 179.77015 * 7 6 5 9 9 C 1.38322 * 120.11830 * 0.53533 * 8 7 6 10 10 C 1.38322 * 120.24407 * 359.69746 * 9 8 7 11 11 C 1.38023 * 120.11879 * 0.04168 * 10 9 8 12 12 C 1.39107 * 119.88386 * 359.77059 * 5 4 3 13 13 C 1.39211 * 119.74727 * 0.50370 * 12 5 4 14 14 C 1.48315 * 120.06890 * 179.74432 * 13 12 5 15 15 C 1.40027 * 119.98289 * 128.20350 * 14 13 12 16 16 N 1.32182 * 120.29589 * 180.02562 * 15 14 13 17 17 C 1.31883 * 120.27858 * 359.74961 * 16 15 14 18 18 C 1.40819 * 119.96491 * 0.52650 * 17 16 15 19 19 C 1.41333 * 120.14633 * 179.72676 * 18 17 16 20 20 H 1.08008 * 120.00083 * 6.63493 * 19 18 17 21 21 C 1.40054 * 120.00001 * 186.63473 * 19 18 17 22 22 N 1.30737 * 119.99707 * 183.35671 * 21 19 18 23 23 Si 1.86793 * 119.99959 * 3.35958 * 21 19 18 24 24 H 1.48504 * 109.47110 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47047 * 299.99811 * 23 21 19 26 26 H 1.48496 * 109.47412 * 59.99920 * 23 21 19 27 27 N 1.32509 * 119.98405 * 308.22757 * 14 13 12 28 28 H 1.09007 * 109.47175 * 264.39986 * 1 2 3 29 29 H 1.09001 * 109.47507 * 24.39926 * 1 2 3 30 30 H 1.08993 * 109.47275 * 144.40118 * 1 2 3 31 31 H 1.07996 * 119.87257 * 0.04431 * 3 2 1 32 32 H 1.07996 * 119.93592 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.05697 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.94049 * 180.25297 * 8 7 6 35 35 H 1.07998 * 119.87673 * 179.72763 * 9 8 7 36 36 H 1.07996 * 119.94157 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.05896 * 179.97438 * 11 10 9 38 38 H 1.07996 * 120.12484 * 180.24951 * 12 5 4 39 39 H 1.07999 * 119.85339 * 0.02562 * 15 14 13 40 40 H 1.08005 * 120.01948 * 180.26006 * 17 16 15 41 41 H 0.97000 * 119.99723 * 354.88383 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1969 0.0000 4 6 3.5772 1.2044 -0.0005 5 6 4.2837 0.0023 -0.0005 6 6 5.7677 0.0124 -0.0005 7 6 6.4751 -1.1881 0.0053 8 6 7.8552 -1.1729 0.0005 9 6 8.5361 0.0311 0.0010 10 6 7.8390 1.2258 0.0001 11 6 6.4587 1.2222 -0.0005 12 6 3.5951 -1.2063 0.0048 13 6 2.2030 -1.2082 -0.0005 14 6 1.4616 -2.4928 -0.0005 15 6 0.4586 -2.7219 0.9493 16 7 -0.2057 -3.8647 0.9552 17 6 0.0673 -4.7971 0.0633 18 6 1.0778 -4.5811 -0.8933 19 6 1.3774 -5.5800 -1.8472 20 1 0.7623 -6.4654 -1.9134 21 6 2.4719 -5.4218 -2.7066 22 7 2.7103 -6.3137 -3.6323 23 14 3.5908 -3.9366 -2.5303 24 1 4.6662 -4.0028 -3.5523 25 1 2.7997 -2.6949 -2.7246 26 1 4.1958 -3.9308 -1.1742 27 7 1.7491 -3.4233 -0.8991 28 1 -0.3634 -0.1003 1.0228 29 1 -0.3634 0.9359 -0.4245 30 1 -0.3633 -0.8355 -0.5982 31 1 1.6532 2.1303 0.0007 32 1 4.1109 2.1433 -0.0009 33 1 5.9444 -2.1286 0.0094 34 1 8.4045 -2.1029 0.0009 35 1 9.6161 0.0384 0.0017 36 1 8.3756 2.1630 0.0002 37 1 5.9153 2.1556 -0.0008 38 1 4.1384 -2.1397 0.0089 39 1 0.2266 -1.9615 1.6803 40 1 -0.4810 -5.7276 0.0694 41 1 2.1750 -7.1214 -3.6768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244059470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:56 Heat of formation + Delta-G solvation = 51.647937 kcal Electronic energy + Delta-G solvation = -24975.216007 eV Core-core repulsion = 21589.730397 eV Total energy + Delta-G solvation = -3385.485610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63171 -40.64092 -39.28882 -36.29259 -35.07555 -34.59674 -33.26880 -32.00514 -31.25634 -30.77843 -27.88678 -27.51858 -25.66047 -24.06603 -23.70273 -23.39444 -22.16899 -21.17657 -20.57067 -18.58752 -18.02225 -17.60102 -17.10844 -16.61886 -16.43646 -16.05355 -15.61875 -15.49240 -15.07642 -14.92278 -14.74975 -14.67228 -14.49839 -14.13559 -14.03388 -13.95102 -13.48149 -13.30502 -13.12516 -12.96322 -12.79577 -12.43700 -12.32432 -12.04317 -11.89769 -11.68572 -11.62638 -11.46910 -11.13768 -10.57018 -10.27473 -9.87671 -9.79255 -9.62576 -9.20499 -8.85379 -7.01834 -0.32972 -0.04444 0.47761 0.48676 0.69753 0.97298 1.43481 1.54022 1.85612 2.26258 2.46852 2.63484 3.08836 3.26052 3.37116 3.61837 3.77964 3.83819 3.94317 4.07094 4.09393 4.10439 4.15024 4.31739 4.32768 4.46022 4.55488 4.61952 4.62871 4.75635 4.80353 4.82412 4.91552 4.97545 5.05289 5.14980 5.21747 5.24462 5.28848 5.34813 5.40090 5.57990 5.58784 5.62048 5.76960 5.81326 5.97483 6.04483 6.09458 6.34705 6.85977 7.33899 7.77761 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.005275 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.070097 B = 5306.771125 C = 7055.283302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 C -0.108 4.108 4 C -0.094 4.094 5 C -0.066 4.066 6 C -0.060 4.060 7 C -0.144 4.144 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.116 4.116 11 C -0.112 4.112 12 C -0.105 4.105 13 C -0.058 4.058 14 C 0.164 3.836 15 C -0.081 4.081 16 N -0.423 5.423 17 C -0.055 4.055 18 C 0.188 3.812 19 C -0.480 4.480 20 H 0.087 0.913 21 C 0.024 3.976 22 N -0.811 5.811 23 Si 1.170 2.830 24 H -0.326 1.326 25 H -0.283 1.283 26 H -0.293 1.293 27 N -0.552 5.552 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.156 0.844 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 18.731 6.884 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.069 4.069 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.066 4.066 6 C -0.060 4.060 7 C -0.162 4.162 8 C -0.145 4.145 9 C -0.139 4.139 10 C -0.134 4.134 11 C -0.129 4.129 12 C -0.124 4.124 13 C -0.060 4.060 14 C 0.020 3.980 15 C -0.239 4.239 16 N -0.134 5.134 17 C -0.224 4.224 18 C 0.063 3.937 19 C -0.514 4.514 20 H 0.105 0.895 21 C -0.196 4.196 22 N -0.433 5.433 23 Si 1.004 2.996 24 H -0.260 1.260 25 H -0.211 1.211 26 H -0.222 1.222 27 N -0.275 5.275 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.118 0.882 39 H 0.186 0.814 40 H 0.173 0.827 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.679 19.309 6.182 22.053 hybrid contribution -1.661 -2.406 0.360 2.945 sum 7.018 16.903 6.542 19.436 Atomic orbital electron populations 1.20896 0.89710 1.02940 1.03157 1.20252 0.97195 0.91554 0.97914 1.21278 0.93966 0.97602 0.99717 1.21624 0.94299 0.97462 0.97737 1.18887 0.92433 0.93171 1.02133 1.18939 0.91241 0.94454 1.01372 1.21422 0.95658 0.97545 1.01564 1.21339 0.93296 0.99891 1.00022 1.21583 1.01380 0.91934 0.98984 1.21514 0.93715 0.99399 0.98753 1.21524 0.95051 0.97007 0.99351 1.21313 0.93256 0.98093 0.99770 1.18480 0.92732 0.91047 1.03701 1.20844 0.93279 0.92731 0.91115 1.23063 0.99873 0.97434 1.03513 1.67807 1.23585 1.00994 1.20996 1.23340 1.02350 1.00225 0.96504 1.19634 0.90789 0.90281 0.93043 1.20815 1.11882 1.04252 1.14403 0.89535 1.28173 0.97897 1.04047 0.89498 1.70623 1.38226 1.08102 1.26362 0.81673 0.71815 0.72249 0.73864 1.25951 1.21141 1.22196 1.67476 1.31180 1.03084 1.25778 0.89348 0.88585 0.94368 0.81283 0.81738 0.88277 0.84857 0.83191 0.82413 0.82930 0.88181 0.81374 0.82716 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 8.44 71.24 0.60 -2.26 16 2 C -0.07 -2.04 5.88 -19.60 -0.12 -2.15 16 3 C -0.11 -2.43 9.65 22.21 0.21 -2.21 16 4 C -0.09 -2.14 9.42 22.52 0.21 -1.93 16 5 C -0.07 -2.03 5.87 -20.07 -0.12 -2.14 16 6 C -0.06 -1.68 5.88 -20.04 -0.12 -1.80 16 7 C -0.14 -4.37 9.43 22.48 0.21 -4.16 16 8 C -0.13 -3.09 10.03 22.24 0.22 -2.87 16 9 C -0.12 -2.24 10.04 22.31 0.22 -2.02 16 10 C -0.12 -1.95 10.03 22.24 0.22 -1.73 16 11 C -0.11 -2.25 9.43 22.48 0.21 -2.04 16 12 C -0.11 -4.05 8.75 22.71 0.20 -3.85 16 13 C -0.06 -2.26 5.59 -20.07 -0.11 -2.37 16 14 C 0.16 7.42 5.50 42.16 0.23 7.65 16 15 C -0.08 -3.44 9.27 85.07 0.79 -2.65 16 16 N -0.42 -19.28 10.47 -192.06 -2.01 -21.29 16 17 C -0.06 -2.67 10.97 85.32 0.94 -1.74 16 18 C 0.19 9.95 6.38 40.23 0.26 10.21 16 19 C -0.48 -26.31 9.59 23.47 0.23 -26.08 16 20 H 0.09 4.64 8.05 -2.91 -0.02 4.61 16 21 C 0.02 1.33 5.52 85.30 0.47 1.80 16 22 N -0.81 -44.42 13.65 21.84 0.30 -44.12 16 23 Si 1.17 60.12 24.85 68.60 1.70 61.82 16 24 H -0.33 -16.45 7.11 99.48 0.71 -15.75 16 25 H -0.28 -14.94 6.64 99.48 0.66 -14.28 16 26 H -0.29 -14.96 6.27 99.48 0.62 -14.34 16 27 N -0.55 -28.64 4.63 -177.65 -0.82 -29.46 16 28 H 0.09 2.00 7.23 -2.38 -0.02 1.99 16 29 H 0.10 1.82 8.05 -2.39 -0.02 1.80 16 30 H 0.04 1.24 6.89 -2.39 -0.02 1.22 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.17 2.37 6.19 -2.91 -0.02 2.35 16 33 H 0.10 3.44 6.20 -2.91 -0.02 3.43 16 34 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 2.08 6.20 -2.91 -0.02 2.07 16 38 H 0.10 4.31 4.94 -2.91 -0.01 4.30 16 39 H 0.17 5.93 6.81 -2.91 -0.02 5.91 16 40 H 0.16 6.80 8.06 -2.91 -0.02 6.77 16 41 H 0.29 15.05 8.72 -92.71 -0.81 14.24 16 Total: -1.00 -67.53 338.87 4.84 -62.70 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.90 Total: 12.70 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.77 Total: -42.34 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -2.54 Total: -94.88 kcal Atomic # 14 Polarization: 60.12 SS G_CDS: 1.70 Total: 61.82 kcal Total: -67.53 4.84 -62.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244059470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.347 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds