Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38192 * 120.38300 * 2 1 4 4 C 1.39881 * 118.38173 * 180.02562 * 3 2 1 5 5 C 1.48363 * 120.47765 * 179.97438 * 4 3 2 6 6 C 1.39014 * 120.42235 * 129.99604 * 5 4 3 7 7 C 1.40952 * 118.13027 * 180.02562 * 6 5 4 8 8 C 1.41369 * 120.57274 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00239 * 155.74101 * 8 7 6 10 10 C 1.39899 * 120.00131 * 335.73562 * 8 7 6 11 11 N 1.30866 * 119.99915 * 343.49686 * 10 8 7 12 12 Si 1.86799 * 120.00076 * 163.48493 * 10 8 7 13 13 H 1.48498 * 109.46929 * 60.00718 * 12 10 8 14 14 H 1.48507 * 109.47032 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47406 * 300.00160 * 12 10 8 16 16 C 1.40804 * 118.85480 * 359.97438 * 7 6 5 17 17 N 1.31507 * 120.69930 * 359.97438 * 16 7 6 18 18 C 1.32158 * 122.07753 * 0.02562 * 17 16 7 19 19 F 1.35099 * 119.46211 * 179.97438 * 18 17 16 20 20 C 1.39224 * 119.04547 * 0.24546 * 4 3 2 21 21 N 1.31791 * 120.66376 * 359.50113 * 20 4 3 22 22 C 1.32306 * 121.77371 * 0.49219 * 21 20 4 23 23 O 1.35663 * 119.55339 * 179.74729 * 22 21 20 24 24 C 1.42899 * 116.99946 * 0.02562 * 23 22 21 25 25 C 1.52997 * 109.46971 * 150.00110 * 24 23 22 26 26 C 1.52996 * 109.47622 * 270.00119 * 24 23 22 27 27 H 1.08996 * 109.47138 * 90.00113 * 1 2 3 28 28 H 1.08996 * 109.47109 * 210.00465 * 1 2 3 29 29 H 1.09001 * 109.46795 * 330.00721 * 1 2 3 30 30 H 1.08002 * 120.81347 * 0.03568 * 3 2 1 31 31 H 1.07995 * 120.93270 * 359.97438 * 6 5 4 32 32 H 0.96992 * 120.00287 * 179.97438 * 11 10 8 33 33 H 1.07996 * 119.64860 * 179.73062 * 16 7 6 34 34 H 1.07998 * 119.66704 * 179.75182 * 20 4 3 35 35 H 1.09006 * 109.46606 * 30.00264 * 24 23 22 36 36 H 1.08996 * 109.47349 * 60.00058 * 25 24 23 37 37 H 1.09006 * 109.47182 * 180.02562 * 25 24 23 38 38 H 1.09008 * 109.47121 * 299.99881 * 25 24 23 39 39 H 1.08998 * 109.47329 * 179.97438 * 26 24 23 40 40 H 1.09000 * 109.47392 * 300.00432 * 26 24 23 41 41 H 1.09010 * 109.46872 * 59.99979 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1921 0.0000 4 6 3.6039 1.1433 -0.0006 5 6 4.4006 2.3949 -0.0011 6 6 5.4289 2.5751 0.9167 7 6 6.1542 3.7829 0.8734 8 6 7.2100 4.0207 1.7829 9 1 7.9951 4.7174 1.5288 10 6 7.2378 3.3536 3.0123 11 7 6.1571 2.7706 3.4650 12 14 8.8175 3.2947 4.0076 13 1 9.2448 4.6775 4.3401 14 1 8.5847 2.5331 5.2611 15 1 9.8788 2.6262 3.2127 16 6 5.8091 4.7485 -0.0916 17 7 4.8278 4.5298 -0.9392 18 6 4.1268 3.4095 -0.9274 19 9 3.1291 3.2404 -1.8225 20 6 4.2369 -0.0967 -0.0063 21 7 3.5329 -1.2108 -0.0013 22 6 2.2099 -1.1989 -0.0004 23 8 1.5301 -2.3729 -0.0003 24 6 2.3069 -3.5723 -0.0007 25 6 1.5359 -4.6796 0.7206 26 6 2.5838 -4.0002 -1.4433 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 1.6856 2.1385 0.0006 31 1 5.6648 1.8116 1.6432 32 1 6.1764 2.3078 4.3171 33 1 6.3535 5.6803 -0.1334 34 1 5.3157 -0.1461 -0.0108 35 1 3.2516 -3.3934 0.5129 36 1 0.5912 -4.8584 0.2070 37 1 2.1286 -5.5944 0.7207 38 1 1.3386 -4.3747 1.7484 39 1 3.1768 -4.9148 -1.4436 40 1 1.6392 -4.1790 -1.9570 41 1 3.1332 -3.2113 -1.9572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244688105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = -38.359596 kcal Electronic energy + Delta-G solvation = -25744.352722 eV Core-core repulsion = 21924.194867 eV Total energy + Delta-G solvation = -3820.157855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.62812 -40.49054 -38.58647 -37.78324 -34.25152 -33.76564 -33.19240 -32.18724 -30.43271 -28.55053 -27.37847 -26.83734 -25.58297 -23.74849 -23.01576 -21.79425 -20.88651 -20.49390 -18.26795 -17.54360 -16.75633 -16.61796 -15.90628 -15.56278 -15.33566 -14.80052 -14.67080 -14.47344 -14.25026 -13.76194 -13.45275 -13.23935 -12.86516 -12.67396 -12.59412 -12.42088 -12.39748 -12.30046 -12.20050 -12.12032 -11.90965 -11.83149 -11.52443 -11.37349 -11.26725 -10.91827 -10.77812 -10.69797 -10.21347 -9.55235 -9.48341 -9.35088 -8.63530 -8.45980 -7.97006 -7.44879 -7.06853 -4.68931 1.35480 1.54902 2.35528 2.64060 2.92359 2.93629 3.00267 3.16619 3.70451 4.06364 4.31954 4.55164 4.81275 4.92551 4.98800 5.08105 5.15336 5.21079 5.31488 5.36787 5.38580 5.43782 5.62282 5.63979 5.72961 5.78252 5.79895 5.93804 6.01445 6.04117 6.12834 6.25899 6.36320 6.45173 6.51545 6.74624 6.77701 6.86851 6.92539 7.37620 7.49668 7.55975 7.69525 8.11716 8.18029 8.41020 8.42599 9.16022 9.84373 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003949 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.430330 B = 7088.692179 C = 8513.621485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.156 4.156 3 C -0.029 4.029 4 C -0.093 4.093 5 C -0.094 4.094 6 C -0.097 4.097 7 C 0.056 3.944 8 C -0.439 4.439 9 H 0.089 0.911 10 C 0.073 3.927 11 N -0.784 5.784 12 Si 0.916 3.084 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.260 1.260 16 C 0.011 3.989 17 N -0.488 5.488 18 C 0.162 3.838 19 F -0.146 7.146 20 C 0.143 3.857 21 N -0.536 5.536 22 C 0.307 3.693 23 O -0.303 6.303 24 C 0.081 3.919 25 C -0.149 4.149 26 C -0.167 4.167 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.288 0.712 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 -10.787 -1.402 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.159 4.159 3 C -0.055 4.055 4 C -0.096 4.096 5 C -0.098 4.098 6 C -0.123 4.123 7 C 0.051 3.949 8 C -0.468 4.468 9 H 0.107 0.893 10 C -0.147 4.147 11 N -0.407 5.407 12 Si 0.740 3.260 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.185 1.185 16 C -0.151 4.151 17 N -0.200 5.200 18 C 0.008 3.992 19 F -0.126 7.126 20 C -0.012 4.012 21 N -0.258 5.258 22 C 0.128 3.872 23 O -0.211 6.211 24 C 0.024 3.976 25 C -0.206 4.206 26 C -0.224 4.224 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.716 -11.195 -1.830 12.702 hybrid contribution 0.516 0.104 0.989 1.120 sum -5.200 -11.091 -0.841 12.278 Atomic orbital electron populations 1.20523 0.89965 1.02659 1.02182 1.19750 0.97375 0.90433 1.08331 1.21410 0.93055 0.97363 0.93640 1.19558 0.93225 0.94075 1.02759 1.18928 0.99488 0.92729 0.98695 1.21739 0.94954 0.98094 0.97484 1.18474 0.92830 0.90838 0.92718 1.19552 1.06880 1.21402 0.98981 0.89343 1.26024 0.97689 0.92942 0.98039 1.69758 1.27781 1.24415 1.18787 0.86210 0.81409 0.79781 0.78621 1.18628 1.20089 1.18471 1.22313 0.96732 0.99225 0.96793 1.66279 1.07355 1.20755 1.25565 1.17514 0.93669 0.93801 0.94223 1.91399 1.58648 1.95299 1.67220 1.22470 0.99546 0.85657 0.93557 1.67154 1.06436 1.32645 1.19554 1.19528 0.87659 0.85750 0.94217 1.86237 1.34937 1.11978 1.87933 1.22261 0.95887 0.82433 0.97013 1.21892 1.00948 0.97034 1.00750 1.22199 1.01991 1.01906 0.96347 0.91476 0.91222 0.91614 0.84376 0.84272 0.90075 0.84360 0.82359 0.89331 0.91848 0.90770 0.91932 0.91416 0.92254 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.81 36.00 0.35 -0.89 16 2 C -0.16 -2.56 5.91 -104.37 -0.62 -3.17 16 3 C -0.03 -0.53 8.69 -38.98 -0.34 -0.87 16 4 C -0.09 -1.85 5.33 -104.75 -0.56 -2.41 16 5 C -0.09 -2.12 5.50 -104.75 -0.58 -2.69 16 6 C -0.10 -2.30 8.30 -38.27 -0.32 -2.62 16 7 C 0.06 1.36 5.59 -106.71 -0.60 0.76 16 8 C -0.44 -10.28 9.08 -37.77 -0.34 -10.63 16 9 H 0.09 1.94 7.90 -52.49 -0.41 1.52 16 10 C 0.07 1.63 5.19 -17.34 -0.09 1.54 16 11 N -0.78 -18.24 10.90 55.54 0.61 -17.64 16 12 Si 0.92 16.74 29.59 -169.99 -5.03 11.71 16 13 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 14 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 15 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 16 C 0.01 0.26 10.96 -16.72 -0.18 0.07 16 17 N -0.49 -11.91 10.33 -12.58 -0.13 -12.04 16 18 C 0.16 3.84 8.32 -16.72 -0.14 3.70 16 19 F -0.15 -3.31 15.97 2.25 0.04 -3.28 16 20 C 0.14 2.64 10.70 -17.20 -0.18 2.46 16 21 N -0.54 -9.41 8.62 -13.05 -0.11 -9.52 16 22 C 0.31 5.16 7.43 -17.08 -0.13 5.04 16 23 O -0.30 -4.49 8.81 -18.69 -0.16 -4.65 16 24 C 0.08 0.99 3.11 -26.73 -0.08 0.91 16 25 C -0.15 -1.40 9.56 37.16 0.36 -1.04 16 26 C -0.17 -1.85 9.53 37.16 0.35 -1.49 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16 29 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.14 2.42 7.86 -52.49 -0.41 2.01 16 31 H 0.14 3.33 6.20 -52.49 -0.33 3.00 16 32 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 33 H 0.14 2.93 8.06 -52.49 -0.42 2.50 16 34 H 0.16 2.73 8.05 -52.49 -0.42 2.31 16 35 H 0.09 1.20 6.98 -51.93 -0.36 0.84 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -26.47 354.51 -7.81 -34.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.27 Total: 7.13 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.09 Total: -11.33 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.36 Total: -39.20 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.16 Total: -4.65 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.47 -7.81 -34.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244688105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.076 kcal (2) G-P(sol) polarization free energy of solvation -26.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds