Wall clock time and date at job start Tue Mar 31 2020 10:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38873 * 119.24782 * 2 1 4 4 C 1.36880 * 119.79415 * 180.25750 * 3 2 1 5 5 C 1.41125 * 118.39827 * 359.49792 * 4 3 2 6 6 C 1.40889 * 120.71909 * 180.27531 * 5 4 3 7 7 H 1.08002 * 119.99706 * 152.86489 * 6 5 4 8 8 C 1.40069 * 120.00273 * 332.85995 * 6 5 4 9 9 N 1.30779 * 119.99869 * 345.59226 * 8 6 5 10 10 Si 1.86792 * 120.00163 * 165.59517 * 8 6 5 11 11 H 1.48506 * 109.47117 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47400 * 119.99823 * 10 8 6 13 13 H 1.48504 * 109.47015 * 239.99837 * 10 8 6 14 14 C 1.41862 * 118.55698 * 0.25414 * 5 4 3 15 15 C 1.47842 * 119.98583 * 180.02562 * 14 5 4 16 16 C 1.39757 * 120.09311 * 316.05942 * 15 14 5 17 17 C 1.37986 * 120.09210 * 179.74528 * 16 15 14 18 18 C 1.38195 * 120.27932 * 0.51076 * 17 16 15 19 19 C 1.39472 * 120.18519 * 359.76460 * 18 17 16 20 20 C 1.48384 * 120.04574 * 180.02562 * 19 18 17 21 21 C 1.39758 * 120.90145 * 179.69831 * 20 19 18 22 22 C 1.37984 * 119.02226 * 179.77390 * 21 20 19 23 23 N 1.31919 * 120.87534 * 0.51391 * 22 21 20 24 24 C 1.31923 * 122.00687 * 359.73841 * 23 22 21 25 25 C 1.37976 * 120.88129 * 359.97438 * 24 23 22 26 26 C 1.39073 * 119.90020 * 359.97438 * 19 18 17 27 27 N 1.31743 * 119.24461 * 179.74673 * 2 1 3 28 28 H 1.09004 * 109.47509 * 270.25392 * 1 2 3 29 29 H 1.09000 * 109.46884 * 30.25273 * 1 2 3 30 30 H 1.08999 * 109.47193 * 150.25203 * 1 2 3 31 31 H 1.08002 * 120.10065 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.80122 * 179.77928 * 4 3 2 33 33 H 0.96996 * 119.99931 * 179.97438 * 9 8 6 34 34 H 1.08007 * 119.95257 * 359.97438 * 16 15 14 35 35 H 1.08001 * 119.85499 * 180.25841 * 17 16 15 36 36 H 1.08000 * 119.90522 * 179.75108 * 18 17 16 37 37 H 1.08007 * 120.49007 * 359.97438 * 21 20 19 38 38 H 1.07993 * 119.56186 * 180.27037 * 22 21 20 39 39 H 1.08005 * 119.56205 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.49311 * 180.02562 * 25 24 23 41 41 H 1.08009 * 120.13467 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2247 -0.0053 5 6 4.2373 -0.0102 0.0001 6 6 5.6455 -0.0538 0.0009 7 1 6.1593 -0.9007 0.4312 8 6 6.3792 1.0011 -0.5567 9 7 5.7834 1.8802 -1.3200 10 14 8.2084 1.1522 -0.2101 11 1 8.6382 0.0397 0.6747 12 1 8.9616 1.0865 -1.4883 13 1 8.4800 2.4503 0.4582 14 6 3.4751 -1.2067 0.0054 15 6 4.1582 -2.5178 0.0118 16 6 5.2545 -2.7409 -0.8258 17 6 5.8953 -3.9630 -0.8160 18 6 5.4515 -4.9758 0.0129 19 6 4.3550 -4.7677 0.8493 20 6 3.8814 -5.8572 1.7384 21 6 2.7885 -5.6662 2.5882 22 6 2.3780 -6.7074 3.3953 23 7 3.0086 -7.8660 3.3787 24 6 4.0472 -8.0857 2.5955 25 6 4.5195 -7.1005 1.7527 26 6 3.7068 -3.5373 0.8495 27 7 2.1506 -1.1495 0.0051 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6349 2.1408 0.0004 32 1 4.0984 2.1577 -0.0090 33 1 6.2914 2.6109 -1.7057 34 1 5.6029 -1.9545 -1.4790 35 1 6.7447 -4.1298 -1.4618 36 1 5.9550 -5.9312 0.0127 37 1 2.2707 -4.7186 2.6106 38 1 1.5318 -6.5707 4.0521 39 1 4.5343 -9.0495 2.6141 40 1 5.3700 -7.2873 1.1138 41 1 2.8576 -3.3718 1.4960 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244781619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:06 Heat of formation + Delta-G solvation = 73.584918 kcal Electronic energy + Delta-G solvation = -24537.248829 eV Core-core repulsion = 21152.714477 eV Total energy + Delta-G solvation = -3384.534351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.127 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.16708 -39.03035 -37.82271 -34.48908 -33.51701 -32.12473 -31.27527 -30.95713 -29.54590 -29.13498 -27.76323 -24.72466 -23.87236 -23.64680 -22.32636 -21.29333 -20.60593 -19.90717 -17.60438 -17.22466 -16.07381 -16.04278 -15.65714 -15.35874 -14.79295 -14.51709 -14.05362 -13.99653 -13.87777 -13.76646 -13.28218 -13.20547 -12.75089 -12.62885 -12.43573 -11.99470 -11.81852 -11.77195 -11.58368 -11.46396 -11.23142 -11.05603 -10.82391 -10.65222 -10.47563 -10.09017 -9.83391 -9.51032 -9.45510 -9.12909 -8.67828 -8.24419 -8.16644 -7.89496 -7.41419 -6.99698 -4.60976 0.85086 1.19872 1.75331 2.25649 2.52983 2.87977 2.93411 2.98862 3.05348 3.72543 3.89297 4.37656 4.47821 4.48226 4.67103 4.80340 5.11711 5.20038 5.25347 5.38185 5.44391 5.51296 5.71779 5.81634 5.90110 5.93263 5.97241 6.02789 6.10208 6.22580 6.32619 6.33136 6.45627 6.49195 6.57780 6.71311 6.74847 6.82916 6.90404 6.95821 6.99564 7.15419 7.31387 7.46671 7.58539 7.74746 7.81561 8.00869 8.26674 8.48661 8.55436 9.47647 9.87949 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.004203 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.770721 B = 6660.237640 C = 8412.351968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.142 4.142 4 C -0.126 4.126 5 C 0.085 3.915 6 C -0.440 4.440 7 H 0.090 0.910 8 C 0.074 3.926 9 N -0.784 5.784 10 Si 0.909 3.091 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.270 1.270 14 C 0.010 3.990 15 C 0.025 3.975 16 C -0.080 4.080 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.079 4.079 20 C 0.022 3.978 21 C -0.170 4.170 22 C 0.099 3.901 23 N -0.499 5.499 24 C 0.097 3.903 25 C -0.174 4.174 26 C -0.086 4.086 27 N -0.448 5.448 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.285 0.715 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -8.348 2.703 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.162 4.162 4 C -0.152 4.152 5 C 0.080 3.920 6 C -0.469 4.469 7 H 0.108 0.892 8 C -0.145 4.145 9 N -0.408 5.408 10 Si 0.732 3.268 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.195 1.195 14 C -0.128 4.128 15 C 0.025 3.975 16 C -0.099 4.099 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.079 4.079 20 C 0.015 3.985 21 C -0.189 4.189 22 C -0.057 4.057 23 N -0.208 5.208 24 C -0.060 4.060 25 C -0.194 4.194 26 C -0.105 4.105 27 N -0.156 5.156 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.691 -9.566 3.109 10.083 hybrid contribution 1.640 1.889 -0.561 2.564 sum 0.949 -7.678 2.548 8.145 Atomic orbital electron populations 1.20288 0.91478 1.00980 1.00448 1.20255 0.94858 0.88495 1.11314 1.21268 0.95448 0.97185 1.02337 1.21406 0.92622 0.98811 1.02369 1.18318 0.94100 0.90786 0.88751 1.19668 0.91007 1.04161 1.32019 0.89217 1.26010 1.01667 0.94183 0.92677 1.69758 1.38921 1.11148 1.21011 0.86220 0.81276 0.79737 0.79541 1.17962 1.19599 1.19462 1.19396 0.88385 0.91120 1.13851 1.18372 0.93724 0.91628 0.93826 1.21641 0.94391 0.96446 0.97398 1.20930 1.00478 0.93470 0.99980 1.21035 0.96608 0.98895 0.97133 1.18465 0.97848 0.93072 0.98535 1.19278 0.93168 0.92956 0.93142 1.22325 0.97877 1.01225 0.97498 1.22639 0.98135 0.88270 0.96620 1.67605 1.08389 1.23307 1.21521 1.22605 0.92752 0.98835 0.91768 1.22203 1.01900 0.93758 1.01552 1.21325 0.98982 0.91593 0.98615 1.66826 1.09542 1.29319 1.09929 0.93145 0.92874 0.92567 0.88265 0.85521 0.90356 0.84497 0.86298 0.86668 0.84358 0.82855 0.83008 0.84712 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 2 C -0.01 -0.16 6.79 -82.39 -0.56 -0.72 16 3 C -0.14 -3.15 9.65 -39.84 -0.38 -3.54 16 4 C -0.13 -3.06 8.73 -38.98 -0.34 -3.40 16 5 C 0.09 2.11 5.55 -106.41 -0.59 1.52 16 6 C -0.44 -10.47 6.77 -37.89 -0.26 -10.73 16 7 H 0.09 2.10 6.42 -52.49 -0.34 1.76 16 8 C 0.07 1.68 5.21 -17.31 -0.09 1.59 16 9 N -0.78 -18.35 10.97 55.55 0.61 -17.74 16 10 Si 0.91 17.09 29.58 -169.99 -5.03 12.06 16 11 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 12 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 13 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 14 C 0.01 0.24 6.43 -82.23 -0.53 -0.28 16 15 C 0.03 0.54 5.25 -104.95 -0.55 -0.01 16 16 C -0.08 -1.56 7.81 -39.11 -0.31 -1.86 16 17 C -0.13 -2.12 10.02 -39.69 -0.40 -2.52 16 18 C -0.12 -1.81 9.45 -39.14 -0.37 -2.18 16 19 C -0.08 -1.31 5.87 -104.95 -0.62 -1.93 16 20 C 0.02 0.33 5.91 -104.58 -0.62 -0.29 16 21 C -0.17 -2.36 9.50 -39.11 -0.37 -2.74 16 22 C 0.10 1.28 11.17 -17.61 -0.20 1.08 16 23 N -0.50 -6.80 10.35 -13.34 -0.14 -6.94 16 24 C 0.10 1.17 11.17 -17.61 -0.20 0.97 16 25 C -0.17 -2.19 9.50 -39.11 -0.37 -2.56 16 26 C -0.09 -1.64 9.06 -38.82 -0.35 -1.99 16 27 N -0.45 -10.56 10.05 -5.44 -0.05 -10.62 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.13 3.10 6.34 -52.49 -0.33 2.77 16 33 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 34 H 0.14 2.82 6.76 -52.48 -0.35 2.47 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.12 1.41 6.28 -52.49 -0.33 1.08 16 37 H 0.14 1.85 6.34 -52.48 -0.33 1.52 16 38 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.14 1.39 6.33 -52.49 -0.33 1.06 16 41 H 0.12 2.28 6.29 -52.48 -0.33 1.94 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -27.31 345.89 -10.57 -37.88 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.44 Total: 10.67 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -6.73 Total: -30.52 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.42 Total: -35.30 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.31 -10.57 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244781619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.467 kcal (2) G-P(sol) polarization free energy of solvation -27.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds